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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 257 |
| Acc36I | ACCTGC | 1 cut(s) | 257 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 80 |
| AccBSI | CCGCTC | 1 cut(s) | 131 |
| AccII | CGCG | 3 cut(s) | 56, 171, 227 |
| AccIII | TCCGGA | 1 cut(s) | 16 |
| AciI | CCGC | 8 cut(s) | 32, 63, 78, 129, 134, 166, 169, 211 |
| AclWI | GGATC | 1 cut(s) | 121 |
| AcoI | YGGCCR | 1 cut(s) | 126 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 80, 110, 210, 211, 248 |
| AflII | CTTAAG | 1 cut(s) | 230 |
| AgsI | TTSAA | 1 cut(s) | 26 |
| AjiI | CACGTC | 1 cut(s) | 60 |
| AjnI | CCWGG | 1 cut(s) | 191 |
| Alw21I | GWGCWC | 1 cut(s) | 70 |
| AlwI | GGATC | 1 cut(s) | 121 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 80 |
| Ama87I | CYCGRG | 1 cut(s) | 149 |
| Aor13HI | TCCGGA | 1 cut(s) | 16 |
| AoxI | GGCC | 3 cut(s) | 29, 126, 189 |
| ApeKI | GCWGC | 1 cut(s) | 159 |
| AspLEI | GCGC | 4 cut(s) | 42, 173, 229, 237 |
| AspS9I | GGNCC | 4 cut(s) | 11, 29, 83, 189 |
| AsuC2I | CCSGG | 6 cut(s) | 36, 95, 111, 138, 150, 151 |
| AsuHPI | GGTGA | 1 cut(s) | 281 |
| AvaI | CYCGRG | 1 cut(s) | 149 |
| AvaII | GGWCC | 2 cut(s) | 11, 83 |
| BanII | GRGCYC | 1 cut(s) | 143 |
| Bbv12I | GWGCWC | 1 cut(s) | 70 |
| BbvI | GCAGC | 1 cut(s) | 171 |
| BccI | CCATC | 1 cut(s) | 246 |
| BceAI | ACGGC | 3 cut(s) | 88, 141, 224 |
| BciT130I | CCWGG | 1 cut(s) | 193 |
| BcnI | CCSGG | 6 cut(s) | 36, 95, 111, 138, 150, 151 |
| BfaI | CTAG | 1 cut(s) | 254 |
| BfoI | RGCGCY | 1 cut(s) | 238 |
| BfrI | CTTAAG | 1 cut(s) | 230 |
| BfuAI | ACCTGC | 1 cut(s) | 257 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 37, 208 |
| BisI | GCNGC | 5 cut(s) | 32, 78, 129, 160, 169 |
| BlpI | GCTNAGC | 1 cut(s) | 99 |
| BlsI | GCNGC | 5 cut(s) | 33, 79, 130, 161, 170 |
| Bme1390I | CCNGG | 7 cut(s) | 36, 95, 111, 138, 150, 151, 193 |
| Bme18I | GGWCC | 2 cut(s) | 11, 83 |
| BmeT110I | CYCGRG | 1 cut(s) | 149 |
| BmgBI | CACGTC | 1 cut(s) | 60 |
| BmgT120I | GGNCC | 4 cut(s) | 11, 29, 83, 189 |
| BmiI | GGNNCC | 2 cut(s) | 85, 190 |
| BmrFI | CCNGG | 7 cut(s) | 36, 95, 111, 138, 150, 151, 193 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 99 |
| BpuMI | CCSGG | 6 cut(s) | 36, 95, 111, 138, 150, 151 |
| BsaJI | CCNNGG | 3 cut(s) | 35, 148, 149 |
| BsaWI | WCCGGW | 2 cut(s) | 16, 44 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 75, 105, 115, 145 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 80, 110, 210, 211, 248 |
| BseAI | TCCGGA | 1 cut(s) | 16 |
| BseBI | CCWGG | 1 cut(s) | 193 |
| BseDI | CCNNGG | 3 cut(s) | 35, 148, 149 |
| BseGI | GGATG | 1 cut(s) | 238 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 80, 110, 210, 211, 248 |
| BseMII | CTCAG | 1 cut(s) | 90 |
| BseX3I | CGGCCG | 1 cut(s) | 126 |
| BseXI | GCAGC | 1 cut(s) | 171 |
| BsgI | GTGCAG | 1 cut(s) | 102 |
| Bsh1236I | CGCG | 3 cut(s) | 56, 171, 227 |
| Bsh1285I | CGRYCG | 2 cut(s) | 129, 166 |
| BshFI | GGCC | 3 cut(s) | 31, 128, 191 |
| BsiEI | CGRYCG | 2 cut(s) | 129, 166 |
| BsiHKAI | GWGCWC | 1 cut(s) | 70 |
| BsiHKCI | CYCGRG | 1 cut(s) | 149 |
| BsiSI | CCGG | 7 cut(s) | 17, 35, 45, 95, 110, 137, 150 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 80, 110, 210, 211, 248 |
| BsnI | GGCC | 3 cut(s) | 31, 128, 191 |
| BsoBI | CYCGRG | 1 cut(s) | 149 |
| Bsp1286I | GDGCHC | 2 cut(s) | 70, 143 |
| Bsp13I | TCCGGA | 1 cut(s) | 16 |
| Bsp143I | GATC | 1 cut(s) | 113 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 99 |
| BspACI | CCGC | 8 cut(s) | 32, 63, 78, 129, 134, 166, 169, 211 |
| BspANI | GGCC | 3 cut(s) | 31, 128, 191 |
| BspCNI | CTCAG | 1 cut(s) | 91 |
| BspEI | TCCGGA | 1 cut(s) | 16 |
| BspFNI | CGCG | 3 cut(s) | 56, 171, 227 |
| BspLI | GGNNCC | 2 cut(s) | 85, 190 |
| BspMI | ACCTGC | 1 cut(s) | 257 |
| BspPI | GGATC | 1 cut(s) | 121 |
| BspQI | GCTCTTC | 1 cut(s) | 75 |
| BspTI | CTTAAG | 1 cut(s) | 230 |
| BsrBI | CCGCTC | 1 cut(s) | 131 |
| BssECI | CCNNGG | 3 cut(s) | 35, 148, 149 |
| BssMI | GATC | 1 cut(s) | 113 |
| Bst2UI | CCWGG | 1 cut(s) | 193 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstAFI | CTTAAG | 1 cut(s) | 230 |
| BstDEI | CTNAG | 2 cut(s) | 99, 288 |
| BstF5I | GGATG | 1 cut(s) | 238 |
| BstFNI | CGCG | 3 cut(s) | 56, 171, 227 |
| BstH2I | RGCGCY | 1 cut(s) | 238 |
| BstHHI | GCGC | 4 cut(s) | 42, 173, 229, 237 |
| BstKTI | GATC | 1 cut(s) | 116 |
| BstMBI | GATC | 1 cut(s) | 113 |
| BstMCI | CGRYCG | 2 cut(s) | 129, 166 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 37, 74, 125, 165, 168, 208 |
| BstNI | CCWGG | 1 cut(s) | 193 |
| BstSCI | CCNGG | 7 cut(s) | 34, 93, 109, 136, 148, 149, 191 |
| BstUI | CGCG | 3 cut(s) | 56, 171, 227 |
| BstV1I | GCAGC | 1 cut(s) | 171 |
| BstX2I | RGATCY | 1 cut(s) | 113 |
| BstYI | RGATCY | 1 cut(s) | 113 |
| BstZI | CGGCCG | 1 cut(s) | 126 |
| BsuRI | GGCC | 3 cut(s) | 31, 128, 191 |
| BtrI | CACGTC | 1 cut(s) | 60 |
| BtsCI | GGATG | 1 cut(s) | 238 |
| BveI | ACCTGC | 1 cut(s) | 257 |
| CaiI | CAGNNNCTG | 1 cut(s) | 80 |
| CfoI | GCGC | 4 cut(s) | 42, 173, 229, 237 |
| Cfr13I | GGNCC | 4 cut(s) | 11, 29, 83, 189 |
| Cfr9I | CCCGGG | 1 cut(s) | 149 |
| CviJI | RGCY | 8 cut(s) | 31, 77, 98, 103, 128, 141, 191, 253 |
| CviKI_1 | RGCY | 8 cut(s) | 31, 77, 98, 103, 128, 141, 191, 253 |
| DdeI | CTNAG | 2 cut(s) | 99, 288 |
| DpnI | GATC | 1 cut(s) | 115 |
| DpnII | GATC | 1 cut(s) | 113 |
| EaeI | YGGCCR | 1 cut(s) | 126 |
| EagI | CGGCCG | 1 cut(s) | 126 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| EciI | GGCGGA | 1 cut(s) | 123 |
| EclXI | CGGCCG | 1 cut(s) | 126 |
| Eco24I | GRGCYC | 1 cut(s) | 143 |
| Eco47I | GGWCC | 2 cut(s) | 11, 83 |
| Eco52I | CGGCCG | 1 cut(s) | 126 |
| Eco88I | CYCGRG | 1 cut(s) | 149 |
| EcoO109I | RGGNCCY | 1 cut(s) | 189 |
| EcoRII | CCWGG | 1 cut(s) | 191 |
| EcoT38I | GRGCYC | 1 cut(s) | 143 |
| FaiI | YATR | 1 cut(s) | 218 |
| FauI | CCCGC | 1 cut(s) | 204 |
| Fnu4HI | GCNGC | 5 cut(s) | 32, 78, 129, 160, 169 |
| FokI | GGATG | 1 cut(s) | 225 |
| FriOI | GRGCYC | 1 cut(s) | 143 |
| Fsp4HI | GCNGC | 5 cut(s) | 32, 78, 129, 160, 169 |
| FspBI | CTAG | 1 cut(s) | 254 |
| GlaI | GCGC | 4 cut(s) | 41, 172, 228, 236 |
| GluI | GCNGC | 5 cut(s) | 32, 78, 129, 160, 169 |
| HaeII | RGCGCY | 1 cut(s) | 238 |
| HaeIII | GGCC | 3 cut(s) | 31, 128, 191 |
| HapII | CCGG | 7 cut(s) | 17, 35, 45, 95, 110, 137, 150 |
| HhaI | GCGC | 4 cut(s) | 42, 173, 229, 237 |
| Hin6I | GCGC | 4 cut(s) | 40, 171, 227, 235 |
| HinP1I | GCGC | 4 cut(s) | 40, 171, 227, 235 |
| HinfI | GANTC | 1 cut(s) | 260 |
| HpaII | CCGG | 7 cut(s) | 17, 35, 45, 95, 110, 137, 150 |
| HphI | GGTGA | 1 cut(s) | 281 |
| Hpy188III | TCNNGA | 1 cut(s) | 17 |
| Hpy99I | CGWCG | 3 cut(s) | 61, 127, 210 |
| HpyCH4IV | ACGT | 1 cut(s) | 59 |
| HpyCH4V | TGCA | 2 cut(s) | 119, 159 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 37, 74, 125, 165, 168, 208 |
| HpyF3I | CTNAG | 2 cut(s) | 99, 288 |
| HpySE526I | ACGT | 1 cut(s) | 59 |
| HspAI | GCGC | 4 cut(s) | 40, 171, 227, 235 |
| Kpn2I | TCCGGA | 1 cut(s) | 16 |
| Kzo9I | GATC | 1 cut(s) | 113 |
| LguI | GCTCTTC | 1 cut(s) | 75 |
| LmnI | GCTCC | 1 cut(s) | 136 |
| Lsp1109I | GCAGC | 1 cut(s) | 171 |
| MaeI | CTAG | 1 cut(s) | 254 |
| MaeII | ACGT | 1 cut(s) | 59 |
| MaeIII | GTNAC | 2 cut(s) | 221, 276 |
| MalI | GATC | 1 cut(s) | 115 |
| MbiI | CCGCTC | 1 cut(s) | 131 |
| MboI | GATC | 1 cut(s) | 113 |
| MboII | GAAGA | 1 cut(s) | 62 |
| MflI | RGATCY | 1 cut(s) | 113 |
| MhlI | GDGCHC | 2 cut(s) | 70, 143 |
| MnlI | CCTC | 3 cut(s) | 24, 101, 185 |
| MroI | TCCGGA | 1 cut(s) | 16 |
| MseI | TTAA | 1 cut(s) | 231 |
| MspA1I | CMGCKG | 1 cut(s) | 80 |
| MspCI | CTTAAG | 1 cut(s) | 230 |
| MspI | CCGG | 7 cut(s) | 17, 35, 45, 95, 110, 137, 150 |
| MspR9I | CCNGG | 7 cut(s) | 36, 95, 111, 138, 150, 151, 193 |
| MvaI | CCWGG | 1 cut(s) | 193 |
| MvnI | CGCG | 3 cut(s) | 56, 171, 227 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 37, 74, 125, 165, 168, 208 |
| NciI | CCSGG | 6 cut(s) | 36, 95, 111, 138, 150, 151 |
| NdeII | GATC | 1 cut(s) | 113 |
| NlaIV | GGNNCC | 2 cut(s) | 85, 190 |
| NmuCI | GTSAC | 1 cut(s) | 221 |
| PaqCI | CACCTGC | 1 cut(s) | 257 |
| PciSI | GCTCTTC | 1 cut(s) | 75 |
| PfeI | GAWTC | 1 cut(s) | 260 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 80 |
| PfoI | TCCNGGA | 1 cut(s) | 109 |
| PkrI | GCNGC | 5 cut(s) | 33, 79, 130, 161, 170 |
| Psp6I | CCWGG | 1 cut(s) | 191 |
| PspGI | CCWGG | 1 cut(s) | 191 |
| PspN4I | GGNNCC | 2 cut(s) | 85, 190 |
| PspPI | GGNCC | 4 cut(s) | 11, 29, 83, 189 |
| PstNI | CAGNNNCTG | 1 cut(s) | 80 |
| PsuI | RGATCY | 1 cut(s) | 113 |
| SapI | GCTCTTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 1 cut(s) | 231 |
| SatI | GCNGC | 5 cut(s) | 32, 78, 129, 160, 169 |
| Sau3AI | GATC | 1 cut(s) | 113 |
| Sau96I | GGNCC | 4 cut(s) | 11, 29, 83, 189 |
| ScrFI | CCNGG | 7 cut(s) | 36, 95, 111, 138, 150, 151, 193 |
| SduI | GDGCHC | 2 cut(s) | 70, 143 |
| SetI | ASST | 4 cut(s) | 62, 93, 223, 271 |
| SinI | GGWCC | 2 cut(s) | 11, 83 |
| SmaI | CCCGGG | 1 cut(s) | 151 |
| SmlI | CTYRAG | 1 cut(s) | 230 |
| SmoI | CTYRAG | 1 cut(s) | 230 |
| SsiI | CCGC | 8 cut(s) | 32, 63, 78, 129, 134, 166, 169, 211 |
| SspMI | CTAG | 1 cut(s) | 254 |
| StyD4I | CCNGG | 7 cut(s) | 34, 93, 109, 136, 148, 149, 191 |
| TaiI | ACGT | 1 cut(s) | 62 |
| TauI | GCSGC | 4 cut(s) | 34, 80, 131, 171 |
| TfiI | GAWTC | 1 cut(s) | 260 |
| Tru1I | TTAA | 1 cut(s) | 231 |
| Tru9I | TTAA | 1 cut(s) | 231 |
| TseFI | GTSAC | 1 cut(s) | 221 |
| TseI | GCWGC | 1 cut(s) | 159 |
| Tsp45I | GTSAC | 1 cut(s) | 221 |
| TspMI | CCCGGG | 1 cut(s) | 149 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 80 |
| Vha464I | CTTAAG | 1 cut(s) | 230 |
| VpaK11BI | GGWCC | 2 cut(s) | 11, 83 |
| XmaI | CCCGGG | 1 cut(s) | 149 |
| XspI | CTAG | 1 cut(s) | 254 |