Rroxscaffold_86G00451270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000086
OG0000098
Physical Location & Seq
Forward (+)
10076 .. 10839
764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_86G00451270.1

Sequence Viewer

Length: 363 bp
ATGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCCGGACCCTACCTCCGCCGAGCCGTTTCCAGTGGTGGGCAGGCTATCTGCACCGACGGCCGCTCCGCCGGCTCACGCCCTGTGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCTCGGCACTTGCCCCGACGGCCGCGCGTAGTCGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCGCTTCGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCTTGGCGTGGCTCAACAAAGCAGCCACGCCGTCCTACCTATTTAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.43

Weight (kDa)

11.51

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 234
AccBSI CCGCTC 1 cut(s) 141
AccII CGCG 4 cut(s) 56, 180, 223, 225
AccIII TCCGGA 1 cut(s) 16
AcoI YGGCCR 2 cut(s) 136, 218
AfiI CCNNNNNNNGG 5 cut(s) 80, 114, 244, 251, 318
AgsI TTSAA 1 cut(s) 26
AjiI CACGTC 1 cut(s) 60
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw21I GWGCWC 2 cut(s) 70, 304
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 4 cut(s) 29, 136, 218, 289
ApeKI GCWGC 2 cut(s) 168, 332
AspLEI GCGC 3 cut(s) 42, 182, 225
AspS9I GGNCC 4 cut(s) 11, 29, 83, 290
AsuC2I CCSGG 2 cut(s) 36, 245
AvaII GGWCC 2 cut(s) 11, 83
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 2 cut(s) 202, 304
BarI GAAGNNNNNNTAC 2 cut(s) 232, 264
Bbv12I GWGCWC 2 cut(s) 70, 304
BbvI GCAGC 2 cut(s) 180, 344
BceAI ACGGC 4 cut(s) 86, 151, 233, 325
BcnI CCSGG 2 cut(s) 36, 245
BglI GCCNNNNNGGC 2 cut(s) 37, 217
BisI GCNGC 8 cut(s) 32, 78, 139, 169, 178, 221, 270, 333
BlsI GCNGC 8 cut(s) 33, 79, 140, 170, 179, 222, 271, 334
Bme1390I CCNGG 2 cut(s) 36, 245
Bme18I GGWCC 2 cut(s) 11, 83
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 4 cut(s) 11, 29, 83, 290
BmiI GGNNCC 2 cut(s) 85, 236
BmrFI CCNGG 2 cut(s) 36, 245
BmsI GCATC 1 cut(s) 273
BpuMI CCSGG 2 cut(s) 36, 245
BsaJI CCNNGG 2 cut(s) 35, 312
BsaWI WCCGGW 3 cut(s) 16, 44, 251
BsaXI ACNNNNNCTCC 4 cut(s) 75, 105, 125, 155
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 114, 244, 251, 318
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 108
BseAI TCCGGA 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 35, 312
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 5 cut(s) 80, 114, 244, 251, 318
BseNI ACTGG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 237
BseX3I CGGCCG 2 cut(s) 136, 218
BseXI GCAGC 2 cut(s) 180, 344
BsgI GTGCAG 1 cut(s) 112
Bsh1236I CGCG 4 cut(s) 56, 180, 223, 225
Bsh1285I CGRYCG 3 cut(s) 139, 175, 221
BshFI GGCC 4 cut(s) 31, 138, 220, 291
BshNI GGYRCC 1 cut(s) 234
BsiEI CGRYCG 3 cut(s) 139, 175, 221
BsiHKAI GWGCWC 2 cut(s) 70, 304
BsiSI CCGG 7 cut(s) 17, 35, 45, 81, 147, 245, 252
BslI CCNNNNNNNGG 5 cut(s) 80, 114, 244, 251, 318
BsnI GGCC 4 cut(s) 31, 138, 220, 291
Bsp1286I GDGCHC 4 cut(s) 70, 202, 237, 304
Bsp13I TCCGGA 1 cut(s) 16
BspANI GGCC 4 cut(s) 31, 138, 220, 291
BspEI TCCGGA 1 cut(s) 16
BspFNI CGCG 4 cut(s) 56, 180, 223, 225
BspLI GGNNCC 2 cut(s) 85, 236
BspQI GCTCTTC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 234
BsrBI CCGCTC 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 2 cut(s) 35, 312
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 120, 148
BstF5I GGATG 1 cut(s) 257
BstFNI CGCG 4 cut(s) 56, 180, 223, 225
BstHHI GCGC 3 cut(s) 42, 182, 225
BstMCI CGRYCG 3 cut(s) 139, 175, 221
BstMWI GCNNNNNNNGC 7 cut(s) 37, 74, 135, 147, 174, 177, 217
BstSCI CCNGG 2 cut(s) 34, 243
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 4 cut(s) 56, 180, 223, 225
BstV1I GCAGC 2 cut(s) 180, 344
BstZI CGGCCG 2 cut(s) 136, 218
BsuRI GGCC 4 cut(s) 31, 138, 220, 291
BtgZI GCGATG 1 cut(s) 250
BtrI CACGTC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 120, 148
CfoI GCGC 3 cut(s) 42, 182, 225
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 4 cut(s) 11, 29, 83, 290
DraI TTTAAA 1 cut(s) 355
EaeI YGGCCR 2 cut(s) 136, 218
EagI CGGCCG 2 cut(s) 136, 218
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 2 cut(s) 83, 133
Ecl136II GAGCTC 1 cut(s) 302
EclXI CGGCCG 2 cut(s) 136, 218
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 2 cut(s) 202, 304
Eco47I GGWCC 2 cut(s) 11, 83
Eco52I CGGCCG 2 cut(s) 136, 218
Eco53kI GAGCTC 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 2 cut(s) 202, 304
ErhI CCWWGG 1 cut(s) 312
FauI CCCGC 1 cut(s) 269
Fnu4HI GCNGC 8 cut(s) 32, 78, 139, 169, 178, 221, 270, 333
FokI GGATG 1 cut(s) 244
FriOI GRGCYC 2 cut(s) 202, 304
Fsp4HI GCNGC 8 cut(s) 32, 78, 139, 169, 178, 221, 270, 333
GlaI GCGC 3 cut(s) 41, 181, 224
GluI GCNGC 8 cut(s) 32, 78, 139, 169, 178, 221, 270, 333
HaeIII GGCC 4 cut(s) 31, 138, 220, 291
HapII CCGG 7 cut(s) 17, 35, 45, 81, 147, 245, 252
HhaI GCGC 3 cut(s) 42, 182, 225
Hin6I GCGC 3 cut(s) 40, 180, 223
HinP1I GCGC 3 cut(s) 40, 180, 223
HinfI GANTC 1 cut(s) 308
HpaII CCGG 7 cut(s) 17, 35, 45, 81, 147, 245, 252
Hpy188III TCNNGA 2 cut(s) 17, 305
Hpy99I CGWCG 3 cut(s) 61, 137, 219
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 129, 168
HpyF10VI GCNNNNNNNGC 7 cut(s) 37, 74, 135, 147, 174, 177, 217
HpySE526I ACGT 1 cut(s) 59
HspAI GCGC 3 cut(s) 40, 180, 223
Kpn2I TCCGGA 1 cut(s) 16
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 2 cut(s) 146, 299
Lsp1109I GCAGC 2 cut(s) 180, 344
LweI GCATC 1 cut(s) 273
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 239
MbiI CCGCTC 1 cut(s) 141
MboII GAAGA 1 cut(s) 62
MhlI GDGCHC 4 cut(s) 70, 202, 237, 304
MnlI CCTC 3 cut(s) 24, 101, 194
MroI TCCGGA 1 cut(s) 16
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 1 cut(s) 354
MspI CCGG 7 cut(s) 17, 35, 45, 81, 147, 245, 252
MspR9I CCNGG 2 cut(s) 36, 245
MvnI CGCG 4 cut(s) 56, 180, 223, 225
MwoI GCNNNNNNNGC 7 cut(s) 37, 74, 135, 147, 174, 177, 217
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 2 cut(s) 36, 245
NgoMIV GCCGGC 1 cut(s) 146
NlaIV GGNNCC 2 cut(s) 85, 236
NmeAIII GCCGAG 2 cut(s) 122, 181
PciSI GCTCTTC 1 cut(s) 75
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 8 cut(s) 33, 79, 140, 170, 179, 222, 271, 334
Psp124BI GAGCTC 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 85, 236
PspPI GGNCC 4 cut(s) 11, 29, 83, 290
SacI GAGCTC 1 cut(s) 304
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 8 cut(s) 32, 78, 139, 169, 178, 221, 270, 333
Sau96I GGNCC 4 cut(s) 11, 29, 83, 290
ScrFI CCNGG 2 cut(s) 36, 245
SduI GDGCHC 4 cut(s) 70, 202, 237, 304
SetI ASST 4 cut(s) 62, 93, 304, 351
SfaNI GCATC 1 cut(s) 273
SinI GGWCC 2 cut(s) 11, 83
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 34, 243
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 306
TauI GCSGC 6 cut(s) 34, 80, 141, 180, 223, 272
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 1 cut(s) 115
TseI GCWGC 2 cut(s) 168, 332
TspDTI ATGAA 1 cut(s) 246
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 2 cut(s) 11, 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.