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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 359 |
| Acc36I | ACCTGC | 1 cut(s) | 359 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 80 |
| AccBSI | CCGCTC | 1 cut(s) | 236 |
| AccII | CGCG | 3 cut(s) | 56, 276, 329 |
| AccIII | TCCGGA | 1 cut(s) | 16 |
| AciI | CCGC | 7 cut(s) | 32, 63, 78, 234, 239, 271, 274 |
| AcoI | YGGCCR | 2 cut(s) | 231, 311 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 80, 93, 109, 174, 313, 320, 350 |
| AflII | CTTAAG | 1 cut(s) | 332 |
| AgsI | TTSAA | 3 cut(s) | 26, 183, 197 |
| AjiI | CACGTC | 1 cut(s) | 60 |
| AjnI | CCWGG | 3 cut(s) | 108, 254, 293 |
| Alw21I | GWGCWC | 1 cut(s) | 70 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 80 |
| Aor13HI | TCCGGA | 1 cut(s) | 16 |
| AoxI | GGCC | 5 cut(s) | 29, 176, 231, 291, 311 |
| ApeKI | GCWGC | 1 cut(s) | 264 |
| AspLEI | GCGC | 4 cut(s) | 43, 278, 331, 339 |
| AspS9I | GGNCC | 4 cut(s) | 11, 29, 83, 291 |
| AsuC2I | CCSGG | 3 cut(s) | 36, 243, 315 |
| AsuHPI | GGTGA | 1 cut(s) | 383 |
| AvaII | GGWCC | 2 cut(s) | 11, 83 |
| BanII | GRGCYC | 1 cut(s) | 248 |
| Bbv12I | GWGCWC | 1 cut(s) | 70 |
| BbvI | GCAGC | 1 cut(s) | 276 |
| BccI | CCATC | 1 cut(s) | 348 |
| BceAI | ACGGC | 4 cut(s) | 87, 133, 246, 326 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 107, 141 |
| BciT130I | CCWGG | 3 cut(s) | 110, 256, 295 |
| BcnI | CCSGG | 3 cut(s) | 36, 243, 315 |
| BfaI | CTAG | 1 cut(s) | 356 |
| BfoI | RGCGCY | 1 cut(s) | 340 |
| BfrI | CTTAAG | 1 cut(s) | 332 |
| BfuAI | ACCTGC | 1 cut(s) | 359 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 310 |
| BglII | AGATCT | 1 cut(s) | 218 |
| BisI | GCNGC | 5 cut(s) | 32, 78, 234, 265, 274 |
| BlpI | GCTNAGC | 1 cut(s) | 98 |
| BlsI | GCNGC | 5 cut(s) | 33, 79, 235, 266, 275 |
| Bme1390I | CCNGG | 6 cut(s) | 36, 110, 243, 256, 295, 315 |
| Bme18I | GGWCC | 2 cut(s) | 11, 83 |
| BmgBI | CACGTC | 1 cut(s) | 60 |
| BmgT120I | GGNCC | 4 cut(s) | 11, 29, 83, 291 |
| BmiI | GGNNCC | 3 cut(s) | 85, 161, 292 |
| BmrFI | CCNGG | 6 cut(s) | 36, 110, 243, 256, 295, 315 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 98 |
| BpuMI | CCSGG | 3 cut(s) | 36, 243, 315 |
| BsaJI | CCNNGG | 3 cut(s) | 35, 109, 254 |
| BsaWI | WCCGGW | 1 cut(s) | 16 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 75, 105, 220, 250 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 80, 93, 109, 174, 313, 320, 350 |
| BseAI | TCCGGA | 1 cut(s) | 16 |
| BseBI | CCWGG | 3 cut(s) | 110, 256, 295 |
| BseDI | CCNNGG | 3 cut(s) | 35, 109, 254 |
| BseGI | GGATG | 1 cut(s) | 340 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 80, 93, 109, 174, 313, 320, 350 |
| BseMII | CTCAG | 1 cut(s) | 89 |
| BseX3I | CGGCCG | 2 cut(s) | 231, 311 |
| BseXI | GCAGC | 1 cut(s) | 276 |
| BsgI | GTGCAG | 1 cut(s) | 207 |
| Bsh1236I | CGCG | 3 cut(s) | 56, 276, 329 |
| Bsh1285I | CGRYCG | 3 cut(s) | 234, 271, 314 |
| BshFI | GGCC | 5 cut(s) | 31, 178, 233, 293, 313 |
| BsiEI | CGRYCG | 3 cut(s) | 234, 271, 314 |
| BsiHKAI | GWGCWC | 1 cut(s) | 70 |
| BsiSI | CCGG | 5 cut(s) | 17, 35, 94, 242, 314 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 80, 93, 109, 174, 313, 320, 350 |
| BsnI | GGCC | 5 cut(s) | 31, 178, 233, 293, 313 |
| Bsp1286I | GDGCHC | 2 cut(s) | 70, 248 |
| Bsp13I | TCCGGA | 1 cut(s) | 16 |
| Bsp143I | GATC | 2 cut(s) | 124, 218 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 98 |
| BspACI | CCGC | 7 cut(s) | 32, 63, 78, 234, 239, 271, 274 |
| BspANI | GGCC | 5 cut(s) | 31, 178, 233, 293, 313 |
| BspCNI | CTCAG | 1 cut(s) | 90 |
| BspEI | TCCGGA | 1 cut(s) | 16 |
| BspFNI | CGCG | 3 cut(s) | 56, 276, 329 |
| BspLI | GGNNCC | 3 cut(s) | 85, 161, 292 |
| BspMI | ACCTGC | 1 cut(s) | 359 |
| BspQI | GCTCTTC | 1 cut(s) | 75 |
| BspTI | CTTAAG | 1 cut(s) | 332 |
| BsrBI | CCGCTC | 1 cut(s) | 236 |
| BssECI | CCNNGG | 3 cut(s) | 35, 109, 254 |
| BssMI | GATC | 2 cut(s) | 124, 218 |
| Bst2UI | CCWGG | 3 cut(s) | 110, 256, 295 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 177 |
| BstAFI | CTTAAG | 1 cut(s) | 332 |
| BstC8I | GCNNGC | 1 cut(s) | 120 |
| BstDEI | CTNAG | 2 cut(s) | 98, 390 |
| BstF5I | GGATG | 1 cut(s) | 340 |
| BstFNI | CGCG | 3 cut(s) | 56, 276, 329 |
| BstH2I | RGCGCY | 1 cut(s) | 340 |
| BstHHI | GCGC | 4 cut(s) | 43, 278, 331, 339 |
| BstKTI | GATC | 2 cut(s) | 127, 221 |
| BstMBI | GATC | 2 cut(s) | 124, 218 |
| BstMCI | CGRYCG | 3 cut(s) | 234, 271, 314 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 40, 74, 230, 270, 273, 310 |
| BstNI | CCWGG | 3 cut(s) | 110, 256, 295 |
| BstSCI | CCNGG | 6 cut(s) | 34, 108, 241, 254, 293, 313 |
| BstUI | CGCG | 3 cut(s) | 56, 276, 329 |
| BstV1I | GCAGC | 1 cut(s) | 276 |
| BstX2I | RGATCY | 1 cut(s) | 218 |
| BstYI | RGATCY | 1 cut(s) | 218 |
| BstZI | CGGCCG | 2 cut(s) | 231, 311 |
| BsuRI | GGCC | 5 cut(s) | 31, 178, 233, 293, 313 |
| BtrI | CACGTC | 1 cut(s) | 60 |
| BtsCI | GGATG | 1 cut(s) | 340 |
| BveI | ACCTGC | 1 cut(s) | 359 |
| Cac8I | GCNNGC | 1 cut(s) | 120 |
| CaiI | CAGNNNCTG | 1 cut(s) | 80 |
| CfoI | GCGC | 4 cut(s) | 43, 278, 331, 339 |
| Cfr13I | GGNCC | 4 cut(s) | 11, 29, 83, 291 |
| CviAII | CATG | 2 cut(s) | 137, 156 |
| DdeI | CTNAG | 2 cut(s) | 98, 390 |
| DpnI | GATC | 2 cut(s) | 126, 220 |
| DpnII | GATC | 2 cut(s) | 124, 218 |
| EaeI | YGGCCR | 2 cut(s) | 231, 311 |
| EagI | CGGCCG | 2 cut(s) | 231, 311 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 177 |
| EarI | CTCTTC | 2 cut(s) | 75, 177 |
| EciI | GGCGGA | 1 cut(s) | 228 |
| EclXI | CGGCCG | 2 cut(s) | 231, 311 |
| Eco24I | GRGCYC | 1 cut(s) | 248 |
| Eco47I | GGWCC | 2 cut(s) | 11, 83 |
| Eco52I | CGGCCG | 2 cut(s) | 231, 311 |
| EcoO109I | RGGNCCY | 1 cut(s) | 291 |
| EcoRII | CCWGG | 3 cut(s) | 108, 254, 293 |
| EcoT38I | GRGCYC | 1 cut(s) | 248 |
| FaeI | CATG | 2 cut(s) | 140, 159 |
| FaiI | YATR | 3 cut(s) | 138, 157, 320 |
| FatI | CATG | 2 cut(s) | 136, 155 |
| Fnu4HI | GCNGC | 5 cut(s) | 32, 78, 234, 265, 274 |
| FokI | GGATG | 1 cut(s) | 327 |
| FriOI | GRGCYC | 1 cut(s) | 248 |
| Fsp4HI | GCNGC | 5 cut(s) | 32, 78, 234, 265, 274 |
| FspBI | CTAG | 1 cut(s) | 356 |
| GlaI | GCGC | 4 cut(s) | 42, 277, 330, 338 |
| GluI | GCNGC | 5 cut(s) | 32, 78, 234, 265, 274 |
| HaeII | RGCGCY | 1 cut(s) | 340 |
| HaeIII | GGCC | 5 cut(s) | 31, 178, 233, 293, 313 |
| HapII | CCGG | 5 cut(s) | 17, 35, 94, 242, 314 |
| HhaI | GCGC | 4 cut(s) | 43, 278, 331, 339 |
| Hin1II | CATG | 2 cut(s) | 140, 159 |
| Hin6I | GCGC | 4 cut(s) | 41, 276, 329, 337 |
| HinP1I | GCGC | 4 cut(s) | 41, 276, 329, 337 |
| HinfI | GANTC | 1 cut(s) | 362 |
| HpaII | CCGG | 5 cut(s) | 17, 35, 94, 242, 314 |
| HphI | GGTGA | 1 cut(s) | 383 |
| Hpy166II | GTNNAC | 1 cut(s) | 153 |
| Hpy188III | TCNNGA | 1 cut(s) | 17 |
| Hpy8I | GTNNAC | 1 cut(s) | 153 |
| Hpy99I | CGWCG | 3 cut(s) | 61, 232, 312 |
| HpyAV | CCTTC | 1 cut(s) | 189 |
| HpyCH4IV | ACGT | 1 cut(s) | 59 |
| HpyCH4V | TGCA | 3 cut(s) | 142, 224, 264 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 40, 74, 230, 270, 273, 310 |
| HpyF3I | CTNAG | 2 cut(s) | 98, 390 |
| HpySE526I | ACGT | 1 cut(s) | 59 |
| Hsp92II | CATG | 2 cut(s) | 140, 159 |
| HspAI | GCGC | 4 cut(s) | 41, 276, 329, 337 |
| Kpn2I | TCCGGA | 1 cut(s) | 16 |
| Kzo9I | GATC | 2 cut(s) | 124, 218 |
| LguI | GCTCTTC | 1 cut(s) | 75 |
| LmnI | GCTCC | 1 cut(s) | 241 |
| Lsp1109I | GCAGC | 1 cut(s) | 276 |
| MaeI | CTAG | 1 cut(s) | 356 |
| MaeII | ACGT | 1 cut(s) | 59 |
| MaeIII | GTNAC | 2 cut(s) | 323, 378 |
| MalI | GATC | 2 cut(s) | 126, 220 |
| MbiI | CCGCTC | 1 cut(s) | 236 |
| MboI | GATC | 2 cut(s) | 124, 218 |
| MboII | GAAGA | 2 cut(s) | 62, 164 |
| MflI | RGATCY | 1 cut(s) | 218 |
| MhlI | GDGCHC | 2 cut(s) | 70, 248 |
| MnlI | CCTC | 3 cut(s) | 24, 101, 180 |
| MroI | TCCGGA | 1 cut(s) | 16 |
| MseI | TTAA | 1 cut(s) | 333 |
| MspA1I | CMGCKG | 1 cut(s) | 80 |
| MspCI | CTTAAG | 1 cut(s) | 332 |
| MspI | CCGG | 5 cut(s) | 17, 35, 94, 242, 314 |
| MspR9I | CCNGG | 6 cut(s) | 36, 110, 243, 256, 295, 315 |
| MvaI | CCWGG | 3 cut(s) | 110, 256, 295 |
| MvnI | CGCG | 3 cut(s) | 56, 276, 329 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 40, 74, 230, 270, 273, 310 |
| NciI | CCSGG | 3 cut(s) | 36, 243, 315 |
| NdeII | GATC | 2 cut(s) | 124, 218 |
| NlaIII | CATG | 2 cut(s) | 140, 159 |
| NlaIV | GGNNCC | 3 cut(s) | 85, 161, 292 |
| NmuCI | GTSAC | 1 cut(s) | 323 |
| PaqCI | CACCTGC | 1 cut(s) | 359 |
| PciSI | GCTCTTC | 1 cut(s) | 75 |
| PfeI | GAWTC | 1 cut(s) | 362 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 80 |
| PkrI | GCNGC | 5 cut(s) | 33, 79, 235, 266, 275 |
| Psp6I | CCWGG | 3 cut(s) | 108, 254, 293 |
| PspGI | CCWGG | 3 cut(s) | 108, 254, 293 |
| PspN4I | GGNNCC | 3 cut(s) | 85, 161, 292 |
| PspPI | GGNCC | 4 cut(s) | 11, 29, 83, 291 |
| PstNI | CAGNNNCTG | 1 cut(s) | 80 |
| PsuI | RGATCY | 1 cut(s) | 218 |
| SapI | GCTCTTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 1 cut(s) | 333 |
| SatI | GCNGC | 5 cut(s) | 32, 78, 234, 265, 274 |
| Sau3AI | GATC | 2 cut(s) | 124, 218 |
| Sau96I | GGNCC | 4 cut(s) | 11, 29, 83, 291 |
| ScrFI | CCNGG | 6 cut(s) | 36, 110, 243, 256, 295, 315 |
| SduI | GDGCHC | 2 cut(s) | 70, 248 |
| SetI | ASST | 6 cut(s) | 62, 93, 165, 260, 325, 373 |
| SinI | GGWCC | 2 cut(s) | 11, 83 |
| SmlI | CTYRAG | 1 cut(s) | 332 |
| SmoI | CTYRAG | 1 cut(s) | 332 |
| SsiI | CCGC | 7 cut(s) | 32, 63, 78, 234, 239, 271, 274 |
| SspI | AATATT | 1 cut(s) | 200 |
| SspMI | CTAG | 1 cut(s) | 356 |
| StyD4I | CCNGG | 6 cut(s) | 34, 108, 241, 254, 293, 313 |
| TaiI | ACGT | 1 cut(s) | 62 |
| TaqI | TCGA | 1 cut(s) | 127 |
| TauI | GCSGC | 4 cut(s) | 34, 80, 236, 276 |
| TfiI | GAWTC | 1 cut(s) | 362 |
| Tru1I | TTAA | 1 cut(s) | 333 |
| Tru9I | TTAA | 1 cut(s) | 333 |
| TseFI | GTSAC | 1 cut(s) | 323 |
| TseI | GCWGC | 1 cut(s) | 264 |
| Tsp45I | GTSAC | 1 cut(s) | 323 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 80 |
| Vha464I | CTTAAG | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 2 cut(s) | 11, 83 |
| XspI | CTAG | 1 cut(s) | 356 |