Rroxscaffold_93G00440860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000093
OG0000098
Physical Location & Seq
Forward (+)
26343 .. 27619
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_93G00440860.1

Sequence Viewer

Length: 897 bp
ATGTCTTCCGCCCGGATCAGCCCCGCCGGCAGTGCTTTGGGTCCAAAAAGAGGGGCAAGTGCCCCGCCTCCGATTCACGGAATAATCGGATTCCCCTTGTCCGTACCAGTTCCGAGTCGATCGTTGAACGCCCGGGAAAGCCCCCGAAGGAGCGTTCCCAGTCCGTCCCCGGCCGCACGCGGCGACCCGCTCTCGCCGCGGAAGCAGCTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACCGGGACCCCCGTGCCCAGCCCTCGCAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGACCGCAGGCTGTTCACCTTGGAGACCCGATGCGGTTATGAGTACGACCGGCGTGAATGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGCGCACCGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCCGGACCCTACCTCCGCCGAGCCGTTTCCAGGTGGGCAGGCTGTTAAACGTAAAAGATAACTCTTCCCGAGGCCCCCGCCGACGTCTCCGACTCCCTAACGTTGCCGTCAACCACCACGTCCCGGTTCAGAATTTTAACCCGATTCCCTTTTCGGTTCGCGCGAGACGCGCTATCGACGGGGTTACCCGCCTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCGGCTCACGCCCTGTGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCCGGCACTTGCCCCGACGGCCGGTATAGGTCACGCGCTTAAGCGCCATCCATTTTCGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

32.78

Weight (kDa)

11.68

Isoelectric Point (pI)

75.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 553
AccBSI CCGCTC 2 cut(s) 190, 776
AccII CGCG 8 cut(s) 180, 199, 444, 627, 629, 636, 815, 869
AccIII TCCGGA 1 cut(s) 405
AclI AACGTT 1 cut(s) 567
AclWI GGATC 4 cut(s) 23, 289, 302, 673
AcoI YGGCCR 3 cut(s) 171, 771, 852
AcsI RAATTY 1 cut(s) 598
AcyI GRCGYC 1 cut(s) 550
AfaI GTAC 2 cut(s) 105, 377
AfiI CCNNNNNNNGG 7 cut(s) 50, 77, 468, 496, 589, 854, 890
AflII CTTAAG 1 cut(s) 872
AgsI TTSAA 4 cut(s) 127, 415, 723, 737
AjiI CACGTC 2 cut(s) 448, 586
AjnI CCWGG 1 cut(s) 495
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 3 cut(s) 350, 557, 625
AlwI GGATC 4 cut(s) 23, 289, 302, 673
Ama87I CYCGRG 4 cut(s) 132, 209, 283, 534
Aor13HI TCCGGA 1 cut(s) 405
AoxI GGCC 7 cut(s) 171, 418, 538, 716, 771, 833, 852
ApeKI GCWGC 3 cut(s) 205, 268, 803
ApoI RAATTY 1 cut(s) 598
AspLEI GCGC 6 cut(s) 431, 629, 638, 817, 871, 879
AspS9I GGNCC 8 cut(s) 41, 241, 247, 400, 418, 471, 539, 833
AsuC2I CCSGG 7 cut(s) 13, 133, 134, 170, 245, 425, 590
AsuHPI GGTGA 2 cut(s) 211, 340
AvaI CYCGRG 4 cut(s) 132, 209, 283, 534
AvaII GGWCC 5 cut(s) 41, 241, 247, 400, 471
BaeGI GKGCMC 2 cut(s) 64, 259
BamHI GGATCC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 3 cut(s) 217, 280, 815
BccI CCATC 1 cut(s) 888
BceAI ACGGC 5 cut(s) 474, 557, 674, 786, 867
BciT130I CCWGG 1 cut(s) 497
BcnI CCSGG 7 cut(s) 13, 133, 134, 170, 245, 425, 590
BcoDI GTCTC 3 cut(s) 350, 557, 625
BfaI CTAG 1 cut(s) 895
BfoI RGCGCY 1 cut(s) 880
BfrI CTTAAG 1 cut(s) 872
BglI GCCNNNNNGGC 3 cut(s) 27, 426, 851
BglII AGATCT 1 cut(s) 758
Bme1390I CCNGG 8 cut(s) 13, 133, 134, 170, 245, 425, 497, 590
Bme18I GGWCC 5 cut(s) 41, 241, 247, 400, 471
BmeT110I CYCGRG 4 cut(s) 132, 209, 283, 534
BmgBI CACGTC 2 cut(s) 448, 586
BmgT120I GGNCC 8 cut(s) 41, 241, 247, 400, 418, 471, 539, 833
BmiI GGNNCC 9 cut(s) 42, 242, 248, 249, 296, 473, 541, 702, 834
BmrFI CCNGG 8 cut(s) 13, 133, 134, 170, 245, 425, 497, 590
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 353
BmuI ACTGGG 1 cut(s) 153
BpuMI CCSGG 7 cut(s) 13, 133, 134, 170, 245, 425, 590
BsaHI GRCGYC 1 cut(s) 550
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 7 cut(s) 132, 168, 197, 284, 351, 424, 535
BsaWI WCCGGW 1 cut(s) 405
BsaXI ACNNNNNCTCC 4 cut(s) 463, 493, 760, 790
Bsc4I CCNNNNNNNGG 7 cut(s) 50, 77, 468, 496, 589, 854, 890
Bse118I RCCGGY 5 cut(s) 26, 381, 781, 835, 854
Bse1I ACTGG 2 cut(s) 107, 159
BseAI TCCGGA 1 cut(s) 405
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 7 cut(s) 132, 168, 197, 284, 351, 424, 535
BseGI GGATG 1 cut(s) 880
BseLI CCNNNNNNNGG 7 cut(s) 50, 77, 468, 496, 589, 854, 890
BseNI ACTGG 2 cut(s) 107, 159
BseSI GKGCMC 2 cut(s) 64, 259
BseX3I CGGCCG 3 cut(s) 171, 771, 852
BseXI GCAGC 3 cut(s) 217, 280, 815
BseYI CCCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 747
Bsh1236I CGCG 8 cut(s) 180, 199, 444, 627, 629, 636, 815, 869
Bsh1285I CGRYCG 6 cut(s) 122, 174, 382, 774, 810, 855
BshFI GGCC 7 cut(s) 173, 420, 540, 718, 773, 835, 854
BsiEI CGRYCG 6 cut(s) 122, 174, 382, 774, 810, 855
BsiHKAI GWGCWC 1 cut(s) 458
BsiHKCI CYCGRG 4 cut(s) 132, 209, 283, 534
BslFI GGGAC 4 cut(s) 151, 254, 260, 572
BslI CCNNNNNNNGG 7 cut(s) 50, 77, 468, 496, 589, 854, 890
BsmAI GTCTC 3 cut(s) 350, 557, 625
BsmBI CGTCTC 2 cut(s) 557, 625
BsmFI GGGAC 4 cut(s) 151, 254, 260, 572
BsnI GGCC 7 cut(s) 173, 420, 540, 718, 773, 835, 854
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 4 cut(s) 132, 209, 283, 534
Bsp1286I GDGCHC 3 cut(s) 64, 259, 458
Bsp13I TCCGGA 1 cut(s) 405
Bsp143I GATC 5 cut(s) 15, 119, 294, 665, 758
BspANI GGCC 7 cut(s) 173, 420, 540, 718, 773, 835, 854
BspEI TCCGGA 1 cut(s) 405
BspFNI CGCG 8 cut(s) 180, 199, 444, 627, 629, 636, 815, 869
BspLI GGNNCC 9 cut(s) 42, 242, 248, 249, 296, 473, 541, 702, 834
BspPI GGATC 4 cut(s) 23, 289, 302, 673
BspQI GCTCTTC 1 cut(s) 463
BspTI CTTAAG 1 cut(s) 872
BspTNI GGTCTC 1 cut(s) 350
BsrBI CCGCTC 2 cut(s) 190, 776
BsrFI RCCGGY 5 cut(s) 26, 381, 781, 835, 854
BsrI ACTGG 2 cut(s) 107, 159
BssAI RCCGGY 5 cut(s) 26, 381, 781, 835, 854
BssECI CCNNGG 7 cut(s) 132, 168, 197, 284, 351, 424, 535
BssMI GATC 5 cut(s) 15, 119, 294, 665, 758
BssNI GRCGYC 1 cut(s) 550
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 497
Bst6I CTCTTC 3 cut(s) 463, 535, 717
BstACI GRCGYC 1 cut(s) 550
BstAFI CTTAAG 1 cut(s) 872
BstC8I GCNNGC 6 cut(s) 28, 178, 341, 506, 783, 837
BstDEI CTNAG 1 cut(s) 661
BstDSI CCRYGG 1 cut(s) 197
BstEII GGTNACC 1 cut(s) 649
BstF5I GGATG 1 cut(s) 880
BstFNI CGCG 8 cut(s) 180, 199, 444, 627, 629, 636, 815, 869
BstH2I RGCGCY 1 cut(s) 880
BstHHI GCGC 6 cut(s) 431, 629, 638, 817, 871, 879
BstKTI GATC 5 cut(s) 18, 122, 297, 668, 761
BstMAI GTCTC 3 cut(s) 350, 557, 625
BstMBI GATC 5 cut(s) 15, 119, 294, 665, 758
BstMCI CGRYCG 6 cut(s) 122, 174, 382, 774, 810, 855
BstNI CCWGG 1 cut(s) 497
BstPI GGTNACC 1 cut(s) 649
BstSCI CCNGG 8 cut(s) 11, 131, 132, 168, 243, 423, 495, 588
BstSLI GKGCMC 2 cut(s) 64, 259
BstUI CGCG 8 cut(s) 180, 199, 444, 627, 629, 636, 815, 869
BstV1I GCAGC 3 cut(s) 217, 280, 815
BstX2I RGATCY 2 cut(s) 294, 758
BstYI RGATCY 2 cut(s) 294, 758
BstZI CGGCCG 3 cut(s) 171, 771, 852
BsuRI GGCC 7 cut(s) 173, 420, 540, 718, 773, 835, 854
BtgI CCRYGG 1 cut(s) 197
BtrI CACGTC 2 cut(s) 448, 586
BtsCI GGATG 1 cut(s) 880
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 6 cut(s) 28, 178, 341, 506, 783, 837
CfoI GCGC 6 cut(s) 431, 629, 638, 817, 871, 879
Cfr10I RCCGGY 5 cut(s) 26, 381, 781, 835, 854
Cfr13I GGNCC 8 cut(s) 41, 241, 247, 400, 418, 471, 539, 833
Cfr42I CCGCGG 1 cut(s) 200
Cfr9I CCCGGG 1 cut(s) 132
CseI GACGC 1 cut(s) 642
Csp6I GTAC 2 cut(s) 104, 376
CviAII CATG 2 cut(s) 678, 697
CviQI GTAC 2 cut(s) 104, 376
DdeI CTNAG 1 cut(s) 661
DpnI GATC 5 cut(s) 17, 121, 296, 667, 760
DpnII GATC 5 cut(s) 15, 119, 294, 665, 758
EaeI YGGCCR 3 cut(s) 171, 771, 852
EagI CGGCCG 3 cut(s) 171, 771, 852
Eam1104I CTCTTC 3 cut(s) 463, 535, 717
EarI CTCTTC 3 cut(s) 463, 535, 717
EciI GGCGGA 2 cut(s) 471, 768
EclXI CGGCCG 3 cut(s) 171, 771, 852
Eco130I CCWWGG 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 5 cut(s) 41, 241, 247, 400, 471
Eco52I CGGCCG 3 cut(s) 171, 771, 852
Eco88I CYCGRG 4 cut(s) 132, 209, 283, 534
Eco91I GGTNACC 1 cut(s) 649
EcoO109I RGGNCCY 2 cut(s) 247, 539
EcoO65I GGTNACC 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 495
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
Esp3I CGTCTC 2 cut(s) 557, 625
FaeI CATG 2 cut(s) 681, 700
FaiI YATR 4 cut(s) 372, 679, 698, 860
FaqI GGGAC 4 cut(s) 151, 254, 260, 572
FatI CATG 2 cut(s) 677, 696
FauI CCCGC 5 cut(s) 31, 72, 195, 551, 662
FokI GGATG 1 cut(s) 867
FspBI CTAG 1 cut(s) 895
GlaI GCGC 6 cut(s) 430, 628, 637, 816, 870, 878
GsaI CCCAGC 1 cut(s) 262
HaeII RGCGCY 1 cut(s) 880
HaeIII GGCC 7 cut(s) 173, 420, 540, 718, 773, 835, 854
HgaI GACGC 1 cut(s) 642
HhaI GCGC 6 cut(s) 431, 629, 638, 817, 871, 879
Hin1I GRCGYC 1 cut(s) 550
Hin1II CATG 2 cut(s) 681, 700
Hin6I GCGC 6 cut(s) 429, 627, 636, 815, 869, 877
HinP1I GCGC 6 cut(s) 429, 627, 636, 815, 869, 877
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 5 cut(s) 73, 90, 115, 558, 610
HphI GGTGA 2 cut(s) 211, 340
Hpy166II GTNNAC 4 cut(s) 219, 348, 577, 694
Hpy188I TCNGA 5 cut(s) 72, 89, 114, 557, 597
Hpy188III TCNNGA 4 cut(s) 239, 283, 406, 534
Hpy8I GTNNAC 4 cut(s) 219, 348, 577, 694
Hpy99I CGWCG 6 cut(s) 234, 449, 552, 647, 772, 853
HpyAV CCTTC 2 cut(s) 141, 729
HpyCH4IV ACGT 5 cut(s) 447, 516, 550, 567, 585
HpyCH4V TGCA 3 cut(s) 683, 764, 803
HpyF3I CTNAG 1 cut(s) 661
HpySE526I ACGT 5 cut(s) 447, 516, 550, 567, 585
Hsp92I GRCGYC 1 cut(s) 550
Hsp92II CATG 2 cut(s) 681, 700
HspAI GCGC 6 cut(s) 429, 627, 636, 815, 869, 877
KflI GGGWCCC 1 cut(s) 247
Kpn2I TCCGGA 1 cut(s) 405
KroI GCCGGC 3 cut(s) 26, 781, 835
KroNI GCCGGC 3 cut(s) 28, 783, 837
KspI CCGCGG 1 cut(s) 200
Kzo9I GATC 5 cut(s) 15, 119, 294, 665, 758
LguI GCTCTTC 1 cut(s) 463
LmnI GCTCC 2 cut(s) 150, 781
Lsp1109I GCAGC 3 cut(s) 217, 280, 815
LweI GCATC 1 cut(s) 353
MaeI CTAG 1 cut(s) 895
MaeII ACGT 5 cut(s) 447, 516, 550, 567, 585
MaeIII GTNAC 3 cut(s) 288, 649, 863
MalI GATC 5 cut(s) 17, 121, 296, 667, 760
MbiI CCGCTC 2 cut(s) 190, 776
MboI GATC 5 cut(s) 15, 119, 294, 665, 758
MboII GAAGA 3 cut(s) 450, 522, 704
MflI RGATCY 2 cut(s) 294, 758
MhlI GDGCHC 3 cut(s) 64, 259, 458
MluCI AATT 1 cut(s) 598
MlyI GAGTC 2 cut(s) 124, 552
MmeI TCCRAC 1 cut(s) 580
MroI TCCGGA 1 cut(s) 405
MroNI GCCGGC 3 cut(s) 26, 781, 835
MseI TTAA 3 cut(s) 512, 603, 873
MspA1I CMGCKG 1 cut(s) 199
MspCI CTTAAG 1 cut(s) 872
MspR9I CCNGG 8 cut(s) 13, 133, 134, 170, 245, 425, 497, 590
MvaI CCWGG 1 cut(s) 497
MvnI CGCG 8 cut(s) 180, 199, 444, 627, 629, 636, 815, 869
NaeI GCCGGC 3 cut(s) 28, 783, 837
NciI CCSGG 7 cut(s) 13, 133, 134, 170, 245, 425, 590
NdeII GATC 5 cut(s) 15, 119, 294, 665, 758
NgoMIV GCCGGC 3 cut(s) 26, 781, 835
NlaIII CATG 2 cut(s) 681, 700
NlaIV GGNNCC 9 cut(s) 42, 242, 248, 249, 296, 473, 541, 702, 834
NmeAIII GCCGAG 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 863
PaeR7I CTCGAG 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 626
PdiI GCCGGC 3 cut(s) 28, 783, 837
PfeI GAWTC 3 cut(s) 73, 90, 610
Ple19I CGATCG 1 cut(s) 122
PleI GAGTC 2 cut(s) 123, 552
PpsI GAGTC 2 cut(s) 123, 552
PpuMI RGGWCCY 1 cut(s) 247
Psp1406I AACGTT 1 cut(s) 567
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 495
PspEI GGTNACC 1 cut(s) 649
PspFI CCCAGC 1 cut(s) 258
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 9 cut(s) 42, 242, 248, 249, 296, 473, 541, 702, 834
PspPI GGNCC 8 cut(s) 41, 241, 247, 400, 418, 471, 539, 833
PspPPI RGGWCCY 1 cut(s) 247
PspXI VCTCGAGB 1 cut(s) 209
PsuI RGATCY 2 cut(s) 294, 758
PvuI CGATCG 1 cut(s) 122
RsaI GTAC 2 cut(s) 105, 377
RsaNI GTAC 2 cut(s) 104, 376
SacII CCGCGG 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 463
SaqAI TTAA 3 cut(s) 512, 603, 873
Sau3AI GATC 5 cut(s) 15, 119, 294, 665, 758
Sau96I GGNCC 8 cut(s) 41, 241, 247, 400, 418, 471, 539, 833
SchI GAGTC 2 cut(s) 124, 552
ScrFI CCNGG 8 cut(s) 13, 133, 134, 170, 245, 425, 497, 590
SduI GDGCHC 3 cut(s) 64, 259, 458
SfaNI GCATC 1 cut(s) 353
Sfr274I CTCGAG 1 cut(s) 209
Sfr303I CCGCGG 1 cut(s) 200
SgrBI CCGCGG 1 cut(s) 200
SinI GGWCC 5 cut(s) 41, 241, 247, 400, 471
SlaI CTCGAG 1 cut(s) 209
SmaI CCCGGG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 209, 872
SmoI CTYRAG 2 cut(s) 209, 872
Sse9I AATT 1 cut(s) 598
SspI AATATT 1 cut(s) 740
SspMI CTAG 1 cut(s) 895
StyD4I CCNGG 8 cut(s) 11, 131, 132, 168, 243, 423, 495, 588
StyI CCWWGG 1 cut(s) 351
TaiI ACGT 5 cut(s) 450, 519, 553, 570, 588
TaqI TCGA 4 cut(s) 118, 210, 642, 668
TaqII GACCGA 1 cut(s) 388
TasI AATT 1 cut(s) 598
TauI GCSGC 7 cut(s) 176, 183, 199, 423, 468, 776, 815
TfiI GAWTC 3 cut(s) 73, 90, 610
Tru1I TTAA 3 cut(s) 512, 603, 873
Tru9I TTAA 3 cut(s) 512, 603, 873
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 1 cut(s) 863
TseI GCWGC 3 cut(s) 205, 268, 803
Tsp45I GTSAC 1 cut(s) 863
TspGWI ACGGA 4 cut(s) 91, 93, 153, 307
TspMI CCCGGG 1 cut(s) 132
TspRI CASTG 1 cut(s) 37
Vha464I CTTAAG 1 cut(s) 872
VpaK11BI GGWCC 5 cut(s) 41, 241, 247, 400, 471
XapI RAATTY 1 cut(s) 598
XhoI CTCGAG 1 cut(s) 209
XmaI CCCGGG 1 cut(s) 132
XspI CTAG 1 cut(s) 895
ZraI GACGTC 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.