Rroxscaffold_71G00445740

DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000071
OG0000098
Physical Location & Seq
Forward (+)
74567 .. 75650
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_71G00445740.1

Sequence Viewer

Length: 408 bp
ATGGAAGGGGGAGGGACGAATCGAAGCGACGCAGGGCTGAATCTCGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCCGTCGCGTATTTAAGTCGTCTCGCAAAGGATTCTACCCGCCGCTCGGTAGAAATTGTAATTCAAGGCGGCCCTCGCAGCTTGTCCGCTGTGAGGGCTTCACCAACGACACGTGCCTTTGGGGGCCTAGGGCCCCTACTGCGGGTCGGCAATCGGACGGCGGGCGCATGCGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCCGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.92

Weight (kDa)

11.21

Isoelectric Point (pI)

65.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 382
AccII CGCG 1 cut(s) 93
AciI CCGC 7 cut(s) 125, 128, 154, 172, 227, 246, 333
AclWI GGATC 1 cut(s) 57
AcoI YGGCCR 1 cut(s) 360
AcvI CACGTG 1 cut(s) 198
AfiI CCNNNNNNNGG 4 cut(s) 131, 178, 226, 227
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 1 cut(s) 150
AluBI AGCT 2 cut(s) 166, 313
AluI AGCT 2 cut(s) 166, 313
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 57
AoxI GGCC 5 cut(s) 63, 155, 209, 216, 360
ApaI GGGCCC 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 57, 163
AspA2I CCTAGG 1 cut(s) 212
AspLEI GCGC 2 cut(s) 252, 258
AspS9I GGNCC 4 cut(s) 156, 209, 216, 217
AsuHPI GGTGA 1 cut(s) 178
AvrII CCTAGG 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 220
BauI CACGAG 1 cut(s) 44
BbrPI CACGTG 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 69, 175
BceAI ACGGC 2 cut(s) 259, 347
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 2 cut(s) 213, 303
BisI GCNGC 4 cut(s) 58, 128, 155, 164
BlnI CCTAGG 1 cut(s) 212
BlsI GCNGC 4 cut(s) 59, 129, 156, 165
BmgT120I GGNCC 4 cut(s) 156, 209, 216, 217
BmiI GGNNCC 3 cut(s) 210, 218, 219
BoxI GACNNNNGTC 1 cut(s) 305
BpiI GAAGAC 1 cut(s) 315
BplI GAGNNNNNCTC 2 cut(s) 297, 329
BpuEI CTTGAG 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 212, 357, 363
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 178, 226, 227
BseDI CCNNGG 3 cut(s) 212, 357, 363
BseLI CCNNNNNNNGG 4 cut(s) 131, 178, 226, 227
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 2 cut(s) 69, 175
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 5 cut(s) 65, 157, 211, 218, 362
BslFI GGGAC 2 cut(s) 28, 402
BslI CCNNNNNNNGG 4 cut(s) 131, 178, 226, 227
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 28, 402
BsnI GGCC 5 cut(s) 65, 157, 211, 218, 362
Bsp120I GGGCCC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 7 cut(s) 125, 128, 154, 172, 227, 246, 333
BspANI GGCC 5 cut(s) 65, 157, 211, 218, 362
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 210, 218, 219
BspPI GGATC 1 cut(s) 57
BsrBI CCGCTC 1 cut(s) 130
BssECI CCNNGG 3 cut(s) 212, 357, 363
BssMI GATC 1 cut(s) 49
BssSI CACGAG 1 cut(s) 44
BssT1I CCWWGG 2 cut(s) 212, 357
Bst2BI CACGAG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 393
BstBAI YACGTR 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 248, 254
BstDSI CCRYGG 1 cut(s) 363
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 2 cut(s) 252, 258
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 5 cut(s) 160, 163, 180, 224, 341
BstNSI RCATGY 1 cut(s) 256
BstPAI GACNNNNGTC 1 cut(s) 305
BstSLI GKGCMC 1 cut(s) 220
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 69, 175
BstV2I GAAGAC 1 cut(s) 315
BsuRI GGCC 5 cut(s) 65, 157, 211, 218, 362
BtgI CCRYGG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 2 cut(s) 248, 254
CfoI GCGC 2 cut(s) 252, 258
Cfr13I GGNCC 4 cut(s) 156, 209, 216, 217
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 253
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 212, 357
Eco24I GRGCYC 1 cut(s) 220
Eco72I CACGTG 1 cut(s) 198
EcoO109I RGGNCCY 3 cut(s) 209, 216, 217
EcoT14I CCWWGG 2 cut(s) 212, 357
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 2 cut(s) 212, 357
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 1 cut(s) 256
FaiI YATR 2 cut(s) 254, 268
FaqI GGGAC 2 cut(s) 28, 402
FatI CATG 1 cut(s) 252
FauI CCCGC 4 cut(s) 132, 220, 239, 340
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 4 cut(s) 58, 128, 155, 164
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 4 cut(s) 58, 128, 155, 164
FspBI CTAG 2 cut(s) 213, 303
GlaI GCGC 2 cut(s) 251, 257
GluI GCNGC 4 cut(s) 58, 128, 155, 164
HaeIII GGCC 5 cut(s) 65, 157, 211, 218, 362
HgaI GACGC 1 cut(s) 38
HhaI GCGC 2 cut(s) 252, 258
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 2 cut(s) 250, 256
HinP1I GCGC 2 cut(s) 250, 256
HinfI GANTC 6 cut(s) 19, 40, 117, 306, 338, 398
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 2 cut(s) 241, 300
Hpy8I GTNNAC 1 cut(s) 383
Hpy99I CGWCG 2 cut(s) 32, 93
HpyCH4III ACNGT 1 cut(s) 393
HpyCH4IV ACGT 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 5 cut(s) 160, 163, 180, 224, 341
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 2 cut(s) 250, 256
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 4 cut(s) 18, 304, 359, 371
Lsp1109I GCAGC 2 cut(s) 69, 175
MaeI CTAG 2 cut(s) 213, 303
MaeII ACGT 1 cut(s) 197
MalI GATC 1 cut(s) 51
MbiI CCGCTC 1 cut(s) 130
MboI GATC 1 cut(s) 49
MboII GAAGA 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 2 cut(s) 139, 145
MlyI GAGTC 1 cut(s) 315
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 4 cut(s) 5, 169, 172, 286
MseI TTAA 2 cut(s) 99, 406
MspA1I CMGCKG 2 cut(s) 174, 335
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 5 cut(s) 160, 163, 180, 224, 341
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 3 cut(s) 210, 218, 219
NspI RCATGY 1 cut(s) 256
PaeI GCATGC 1 cut(s) 256
PfeI GAWTC 5 cut(s) 19, 40, 117, 338, 398
PkrI GCNGC 4 cut(s) 59, 129, 156, 165
PleI GAGTC 1 cut(s) 314
PmaCI CACGTG 1 cut(s) 198
PmlI CACGTG 1 cut(s) 198
PpsI GAGTC 1 cut(s) 314
Ppu21I YACGTR 1 cut(s) 198
PshAI GACNNNNGTC 1 cut(s) 305
PspCI CACGTG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 210, 218, 219
PspOMI GGGCCC 1 cut(s) 216
PspPI GGNCC 4 cut(s) 156, 209, 216, 217
SaqAI TTAA 2 cut(s) 99, 406
SatI GCNGC 4 cut(s) 58, 128, 155, 164
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 4 cut(s) 156, 209, 216, 217
SchI GAGTC 1 cut(s) 315
SduI GDGCHC 1 cut(s) 220
SetI ASST 5 cut(s) 168, 200, 278, 315, 323
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
SphI GCATGC 1 cut(s) 256
Sse9I AATT 2 cut(s) 139, 145
SsiI CCGC 7 cut(s) 125, 128, 154, 172, 227, 246, 333
SspMI CTAG 2 cut(s) 213, 303
StyI CCWWGG 2 cut(s) 212, 357
TaaI ACNGT 1 cut(s) 393
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 22
TasI AATT 2 cut(s) 139, 145
TauI GCSGC 2 cut(s) 130, 157
TfiI GAWTC 5 cut(s) 19, 40, 117, 338, 398
Tru1I TTAA 2 cut(s) 99, 406
Tru9I TTAA 2 cut(s) 99, 406
TscAI CASTG 1 cut(s) 398
TseI GCWGC 2 cut(s) 57, 163
TspRI CASTG 1 cut(s) 398
XceI RCATGY 1 cut(s) 256
XmaJI CCTAGG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 382
XspI CTAG 2 cut(s) 213, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.