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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 295 |
| AccII | CGCG | 5 cut(s) | 57, 186, 369, 371, 378 |
| AccIII | TCCGGA | 1 cut(s) | 147 |
| AclI | AACGTT | 1 cut(s) | 309 |
| AclWI | GGATC | 1 cut(s) | 23 |
| AcsI | RAATTY | 1 cut(s) | 340 |
| AcyI | GRCGYC | 1 cut(s) | 292 |
| AfaI | GTAC | 1 cut(s) | 119 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 29, 50, 75, 331 |
| AgsI | TTSAA | 1 cut(s) | 157 |
| AjiI | CACGTC | 2 cut(s) | 190, 328 |
| Alw21I | GWGCWC | 1 cut(s) | 200 |
| Alw26I | GTCTC | 3 cut(s) | 92, 299, 367 |
| AlwI | GGATC | 1 cut(s) | 23 |
| Ama87I | CYCGRG | 1 cut(s) | 276 |
| Aor13HI | TCCGGA | 1 cut(s) | 147 |
| AoxI | GGCC | 3 cut(s) | 58, 160, 280 |
| ApoI | RAATTY | 1 cut(s) | 340 |
| AspLEI | GCGC | 4 cut(s) | 57, 173, 371, 380 |
| AspS9I | GGNCC | 6 cut(s) | 41, 59, 142, 160, 212, 281 |
| AsuC2I | CCSGG | 3 cut(s) | 13, 167, 332 |
| AsuHPI | GGTGA | 1 cut(s) | 82 |
| AvaI | CYCGRG | 1 cut(s) | 276 |
| AvaII | GGWCC | 3 cut(s) | 41, 142, 212 |
| Bbv12I | GWGCWC | 1 cut(s) | 200 |
| BceAI | ACGGC | 2 cut(s) | 215, 299 |
| BcnI | CCSGG | 3 cut(s) | 13, 167, 332 |
| BcoDI | GTCTC | 3 cut(s) | 92, 299, 367 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 27, 168 |
| BisI | GCNGC | 3 cut(s) | 58, 163, 207 |
| BlsI | GCNGC | 3 cut(s) | 59, 164, 208 |
| Bme1390I | CCNGG | 3 cut(s) | 13, 167, 332 |
| Bme18I | GGWCC | 3 cut(s) | 41, 142, 212 |
| BmeT110I | CYCGRG | 1 cut(s) | 276 |
| BmgBI | CACGTC | 2 cut(s) | 190, 328 |
| BmgT120I | GGNCC | 6 cut(s) | 41, 59, 142, 160, 212, 281 |
| BmiI | GGNNCC | 4 cut(s) | 42, 61, 214, 283 |
| BmrFI | CCNGG | 3 cut(s) | 13, 167, 332 |
| BmsI | GCATC | 1 cut(s) | 95 |
| BpuMI | CCSGG | 3 cut(s) | 13, 167, 332 |
| BsaHI | GRCGYC | 1 cut(s) | 292 |
| BsaI | GGTCTC | 1 cut(s) | 92 |
| BsaJI | CCNNGG | 3 cut(s) | 93, 166, 277 |
| BsaWI | WCCGGW | 1 cut(s) | 147 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 204, 234 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 29, 50, 75, 331 |
| Bse118I | RCCGGY | 2 cut(s) | 26, 123 |
| BseAI | TCCGGA | 1 cut(s) | 147 |
| BseDI | CCNNGG | 3 cut(s) | 93, 166, 277 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 29, 50, 75, 331 |
| Bsh1236I | CGCG | 5 cut(s) | 57, 186, 369, 371, 378 |
| Bsh1285I | CGRYCG | 1 cut(s) | 124 |
| BshFI | GGCC | 3 cut(s) | 60, 162, 282 |
| BsiEI | CGRYCG | 1 cut(s) | 124 |
| BsiHKAI | GWGCWC | 1 cut(s) | 200 |
| BsiHKCI | CYCGRG | 1 cut(s) | 276 |
| BsiSI | CCGG | 7 cut(s) | 13, 27, 124, 148, 166, 210, 332 |
| BslFI | GGGAC | 1 cut(s) | 314 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 29, 50, 75, 331 |
| BsmAI | GTCTC | 3 cut(s) | 92, 299, 367 |
| BsmBI | CGTCTC | 2 cut(s) | 299, 367 |
| BsmFI | GGGAC | 1 cut(s) | 314 |
| BsnI | GGCC | 3 cut(s) | 60, 162, 282 |
| Bso31I | GGTCTC | 1 cut(s) | 92 |
| BsoBI | CYCGRG | 1 cut(s) | 276 |
| Bsp1286I | GDGCHC | 1 cut(s) | 200 |
| Bsp13I | TCCGGA | 1 cut(s) | 147 |
| Bsp143I | GATC | 1 cut(s) | 15 |
| BspANI | GGCC | 3 cut(s) | 60, 162, 282 |
| BspEI | TCCGGA | 1 cut(s) | 147 |
| BspFNI | CGCG | 5 cut(s) | 57, 186, 369, 371, 378 |
| BspLI | GGNNCC | 4 cut(s) | 42, 61, 214, 283 |
| BspPI | GGATC | 1 cut(s) | 23 |
| BspQI | GCTCTTC | 1 cut(s) | 205 |
| BspTNI | GGTCTC | 1 cut(s) | 92 |
| BsrFI | RCCGGY | 2 cut(s) | 26, 123 |
| BssAI | RCCGGY | 2 cut(s) | 26, 123 |
| BssECI | CCNNGG | 3 cut(s) | 93, 166, 277 |
| BssMI | GATC | 1 cut(s) | 15 |
| BssNI | GRCGYC | 1 cut(s) | 292 |
| BssT1I | CCWWGG | 1 cut(s) | 93 |
| Bst6I | CTCTTC | 2 cut(s) | 205, 277 |
| BstACI | GRCGYC | 1 cut(s) | 292 |
| BstC8I | GCNNGC | 1 cut(s) | 28 |
| BstDEI | CTNAG | 1 cut(s) | 402 |
| BstEII | GGTNACC | 1 cut(s) | 390 |
| BstFNI | CGCG | 5 cut(s) | 57, 186, 369, 371, 378 |
| BstHHI | GCGC | 4 cut(s) | 57, 173, 371, 380 |
| BstKTI | GATC | 1 cut(s) | 18 |
| BstMAI | GTCTC | 3 cut(s) | 92, 299, 367 |
| BstMBI | GATC | 1 cut(s) | 15 |
| BstMCI | CGRYCG | 1 cut(s) | 124 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 27, 32, 133, 168, 375, 377 |
| BstPI | GGTNACC | 1 cut(s) | 390 |
| BstSCI | CCNGG | 3 cut(s) | 11, 165, 330 |
| BstUI | CGCG | 5 cut(s) | 57, 186, 369, 371, 378 |
| BsuRI | GGCC | 3 cut(s) | 60, 162, 282 |
| BtrI | CACGTC | 2 cut(s) | 190, 328 |
| BtsI | GCAGTG | 1 cut(s) | 253 |
| BtsIMutI | CAGTG | 1 cut(s) | 253 |
| Cac8I | GCNNGC | 1 cut(s) | 28 |
| CfoI | GCGC | 4 cut(s) | 57, 173, 371, 380 |
| Cfr10I | RCCGGY | 2 cut(s) | 26, 123 |
| Cfr13I | GGNCC | 6 cut(s) | 41, 59, 142, 160, 212, 281 |
| CseI | GACGC | 1 cut(s) | 384 |
| Csp6I | GTAC | 1 cut(s) | 118 |
| CviJI | RGCY | 5 cut(s) | 21, 60, 162, 230, 282 |
| CviKI_1 | RGCY | 5 cut(s) | 21, 60, 162, 230, 282 |
| CviQI | GTAC | 1 cut(s) | 118 |
| DdeI | CTNAG | 1 cut(s) | 402 |
| DpnI | GATC | 1 cut(s) | 17 |
| DpnII | GATC | 1 cut(s) | 15 |
| Eam1104I | CTCTTC | 2 cut(s) | 205, 277 |
| EarI | CTCTTC | 2 cut(s) | 205, 277 |
| EciI | GGCGGA | 2 cut(s) | 193, 212 |
| Eco130I | CCWWGG | 1 cut(s) | 93 |
| Eco31I | GGTCTC | 1 cut(s) | 92 |
| Eco47I | GGWCC | 3 cut(s) | 41, 142, 212 |
| Eco88I | CYCGRG | 1 cut(s) | 276 |
| Eco91I | GGTNACC | 1 cut(s) | 390 |
| EcoO109I | RGGNCCY | 1 cut(s) | 281 |
| EcoO65I | GGTNACC | 1 cut(s) | 390 |
| EcoT14I | CCWWGG | 1 cut(s) | 93 |
| ErhI | CCWWGG | 1 cut(s) | 93 |
| Esp3I | CGTCTC | 2 cut(s) | 299, 367 |
| FaiI | YATR | 1 cut(s) | 114 |
| FaqI | GGGAC | 1 cut(s) | 314 |
| FauI | CCCGC | 4 cut(s) | 31, 70, 293, 403 |
| Fnu4HI | GCNGC | 3 cut(s) | 58, 163, 207 |
| Fsp4HI | GCNGC | 3 cut(s) | 58, 163, 207 |
| GlaI | GCGC | 4 cut(s) | 56, 172, 370, 379 |
| GluI | GCNGC | 3 cut(s) | 58, 163, 207 |
| HaeIII | GGCC | 3 cut(s) | 60, 162, 282 |
| HapII | CCGG | 7 cut(s) | 13, 27, 124, 148, 166, 210, 332 |
| HgaI | GACGC | 1 cut(s) | 384 |
| HhaI | GCGC | 4 cut(s) | 57, 173, 371, 380 |
| Hin1I | GRCGYC | 1 cut(s) | 292 |
| Hin6I | GCGC | 4 cut(s) | 55, 171, 369, 378 |
| HinP1I | GCGC | 4 cut(s) | 55, 171, 369, 378 |
| HincII | GTYRAC | 1 cut(s) | 319 |
| HindII | GTYRAC | 1 cut(s) | 319 |
| HinfI | GANTC | 3 cut(s) | 71, 300, 352 |
| HpaII | CCGG | 7 cut(s) | 13, 27, 124, 148, 166, 210, 332 |
| HphI | GGTGA | 1 cut(s) | 82 |
| Hpy166II | GTNNAC | 2 cut(s) | 90, 319 |
| Hpy188I | TCNGA | 3 cut(s) | 70, 299, 339 |
| Hpy188III | TCNNGA | 2 cut(s) | 148, 276 |
| Hpy8I | GTNNAC | 2 cut(s) | 90, 319 |
| Hpy99I | CGWCG | 3 cut(s) | 191, 294, 389 |
| HpyCH4IV | ACGT | 5 cut(s) | 189, 258, 292, 309, 327 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 27, 32, 133, 168, 375, 377 |
| HpyF3I | CTNAG | 1 cut(s) | 402 |
| HpySE526I | ACGT | 5 cut(s) | 189, 258, 292, 309, 327 |
| Hsp92I | GRCGYC | 1 cut(s) | 292 |
| HspAI | GCGC | 4 cut(s) | 55, 171, 369, 378 |
| Kpn2I | TCCGGA | 1 cut(s) | 147 |
| KroI | GCCGGC | 1 cut(s) | 26 |
| KroNI | GCCGGC | 1 cut(s) | 28 |
| Kzo9I | GATC | 1 cut(s) | 15 |
| LguI | GCTCTTC | 1 cut(s) | 205 |
| LpnPI | CCDG | 7 cut(s) | 26, 40, 137, 161, 179, 223, 345 |
| LweI | GCATC | 1 cut(s) | 95 |
| MaeII | ACGT | 5 cut(s) | 189, 258, 292, 309, 327 |
| MaeIII | GTNAC | 1 cut(s) | 390 |
| MalI | GATC | 1 cut(s) | 17 |
| MboI | GATC | 1 cut(s) | 15 |
| MboII | GAAGA | 2 cut(s) | 192, 264 |
| MhlI | GDGCHC | 1 cut(s) | 200 |
| MluCI | AATT | 1 cut(s) | 340 |
| MlyI | GAGTC | 1 cut(s) | 294 |
| MmeI | TCCRAC | 1 cut(s) | 322 |
| MnlI | CCTC | 5 cut(s) | 44, 76, 155, 230, 272 |
| MreI | CGCCGGCG | 1 cut(s) | 26 |
| MroI | TCCGGA | 1 cut(s) | 147 |
| MroNI | GCCGGC | 1 cut(s) | 26 |
| MseI | TTAA | 2 cut(s) | 254, 345 |
| MspI | CCGG | 7 cut(s) | 13, 27, 124, 148, 166, 210, 332 |
| MspR9I | CCNGG | 3 cut(s) | 13, 167, 332 |
| MvnI | CGCG | 5 cut(s) | 57, 186, 369, 371, 378 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 27, 32, 133, 168, 375, 377 |
| NaeI | GCCGGC | 1 cut(s) | 28 |
| NciI | CCSGG | 3 cut(s) | 13, 167, 332 |
| NdeII | GATC | 1 cut(s) | 15 |
| NgoMIV | GCCGGC | 1 cut(s) | 26 |
| NlaIV | GGNNCC | 4 cut(s) | 42, 61, 214, 283 |
| NmeAIII | GCCGAG | 1 cut(s) | 251 |
| PciSI | GCTCTTC | 1 cut(s) | 205 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 368 |
| PdiI | GCCGGC | 1 cut(s) | 28 |
| PfeI | GAWTC | 2 cut(s) | 71, 352 |
| PkrI | GCNGC | 3 cut(s) | 59, 164, 208 |
| PleI | GAGTC | 1 cut(s) | 294 |
| PpsI | GAGTC | 1 cut(s) | 294 |
| Psp1406I | AACGTT | 1 cut(s) | 309 |
| PspEI | GGTNACC | 1 cut(s) | 390 |
| PspN4I | GGNNCC | 4 cut(s) | 42, 61, 214, 283 |
| PspPI | GGNCC | 6 cut(s) | 41, 59, 142, 160, 212, 281 |
| RsaI | GTAC | 1 cut(s) | 119 |
| RsaNI | GTAC | 1 cut(s) | 118 |
| SapI | GCTCTTC | 1 cut(s) | 205 |
| SaqAI | TTAA | 2 cut(s) | 254, 345 |
| SatI | GCNGC | 3 cut(s) | 58, 163, 207 |
| Sau3AI | GATC | 1 cut(s) | 15 |
| Sau96I | GGNCC | 6 cut(s) | 41, 59, 142, 160, 212, 281 |
| SchI | GAGTC | 1 cut(s) | 294 |
| ScrFI | CCNGG | 3 cut(s) | 13, 167, 332 |
| SduI | GDGCHC | 1 cut(s) | 200 |
| SetI | ASST | 7 cut(s) | 95, 192, 222, 261, 295, 312, 330 |
| SfaNI | GCATC | 1 cut(s) | 95 |
| SgrAI | CRCCGGYG | 1 cut(s) | 26 |
| SinI | GGWCC | 3 cut(s) | 41, 142, 212 |
| Sse9I | AATT | 1 cut(s) | 340 |
| StyD4I | CCNGG | 3 cut(s) | 11, 165, 330 |
| StyI | CCWWGG | 1 cut(s) | 93 |
| TaiI | ACGT | 5 cut(s) | 192, 261, 295, 312, 330 |
| TaqI | TCGA | 1 cut(s) | 384 |
| TaqII | GACCGA | 1 cut(s) | 130 |
| TasI | AATT | 1 cut(s) | 340 |
| TauI | GCSGC | 3 cut(s) | 60, 165, 209 |
| TfiI | GAWTC | 2 cut(s) | 71, 352 |
| Tru1I | TTAA | 2 cut(s) | 254, 345 |
| Tru9I | TTAA | 2 cut(s) | 254, 345 |
| TscAI | CASTG | 1 cut(s) | 253 |
| TspGWI | ACGGA | 1 cut(s) | 91 |
| TspRI | CASTG | 1 cut(s) | 253 |
| VpaK11BI | GGWCC | 3 cut(s) | 41, 142, 212 |
| XapI | RAATTY | 1 cut(s) | 340 |
| ZraI | GACGTC | 1 cut(s) | 293 |