Rroxscaffold_33G00439670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000033
OG0000098
Physical Location & Seq
Forward (+)
3666 .. 4235
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_33G00439670.1

Sequence Viewer

Length: 354 bp
ATGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGCTGCCGGACACCACGCGACGTGCGGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCGGGCTCACGCCCCGGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCACGGCACTTGCCCCGACGGCCGGGTATAGGTCACGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.79

Weight (kDa)

11.31

Isoelectric Point (pI)

63.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 176
AccII CGCG 3 cut(s) 55, 216, 272
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 8 cut(s) 32, 62, 174, 179, 211, 214, 311, 336
AclWI GGATC 1 cut(s) 72
AcoI YGGCCR 2 cut(s) 171, 254
AfiI CCNNNNNNNGG 4 cut(s) 114, 256, 263, 293
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 3 cut(s) 26, 123, 137
AjiI CACGTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 194
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 4 cut(s) 29, 116, 171, 254
ApeKI GCWGC 2 cut(s) 40, 204
AspLEI GCGC 3 cut(s) 218, 274, 282
AspS9I GGNCC 2 cut(s) 11, 29
AsuC2I CCSGG 5 cut(s) 36, 183, 195, 196, 258
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 1 cut(s) 11
BaeGI GKGCMC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 27, 216
BccI CCATC 1 cut(s) 291
BceAI ACGGC 4 cut(s) 73, 186, 254, 269
BcnI CCSGG 5 cut(s) 36, 183, 195, 196, 258
BfaI CTAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 283
BfrI CTTAAG 1 cut(s) 275
BglI GCCNNNNNGGC 2 cut(s) 37, 253
BglII AGATCT 1 cut(s) 158
BisI GCNGC 5 cut(s) 32, 41, 174, 205, 214
BlsI GCNGC 5 cut(s) 33, 42, 175, 206, 215
Bme1390I CCNGG 5 cut(s) 36, 183, 195, 196, 258
Bme18I GGWCC 1 cut(s) 11
BmeT110I CYCGRG 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 11, 29
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 5 cut(s) 36, 183, 195, 196, 258
Bpu10I CCTNAGC 1 cut(s) 332
BpuMI CCSGG 5 cut(s) 36, 183, 195, 196, 258
BsaJI CCNNGG 3 cut(s) 35, 193, 194
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 256, 263, 293
BseAI TCCGGA 1 cut(s) 16
BseDI CCNNGG 3 cut(s) 35, 193, 194
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 4 cut(s) 114, 256, 263, 293
BseSI GKGCMC 1 cut(s) 238
BseX3I CGGCCG 2 cut(s) 171, 254
BseXI GCAGC 2 cut(s) 27, 216
BsgI GTGCAG 1 cut(s) 147
Bsh1236I CGCG 3 cut(s) 55, 216, 272
Bsh1285I CGRYCG 3 cut(s) 174, 211, 257
BshFI GGCC 4 cut(s) 31, 118, 173, 256
BsiEI CGRYCG 3 cut(s) 174, 211, 257
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 6 cut(s) 17, 35, 44, 182, 195, 257
BslI CCNNNNNNNGG 4 cut(s) 114, 256, 263, 293
BsnI GGCC 4 cut(s) 31, 118, 173, 256
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 2 cut(s) 188, 238
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 2 cut(s) 64, 158
BspACI CCGC 8 cut(s) 32, 62, 174, 179, 211, 214, 311, 336
BspANI GGCC 4 cut(s) 31, 118, 173, 256
BspEI TCCGGA 1 cut(s) 16
BspFNI CGCG 3 cut(s) 55, 216, 272
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 1 cut(s) 72
BspTI CTTAAG 1 cut(s) 275
BsrBI CCGCTC 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 35, 193, 194
BssMI GATC 2 cut(s) 64, 158
Bst6I CTCTTC 1 cut(s) 117
BstAFI CTTAAG 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 3 cut(s) 55, 216, 272
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 3 cut(s) 218, 274, 282
BstKTI GATC 2 cut(s) 67, 161
BstMBI GATC 2 cut(s) 64, 158
BstMCI CGRYCG 3 cut(s) 174, 211, 257
BstMWI GCNNNNNNNGC 6 cut(s) 37, 40, 170, 210, 213, 253
BstSCI CCNGG 5 cut(s) 34, 181, 193, 194, 256
BstSLI GKGCMC 1 cut(s) 238
BstUI CGCG 3 cut(s) 55, 216, 272
BstV1I GCAGC 2 cut(s) 27, 216
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BstZI CGGCCG 2 cut(s) 171, 254
BsuRI GGCC 4 cut(s) 31, 118, 173, 256
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 283
CfoI GCGC 3 cut(s) 218, 274, 282
Cfr13I GGNCC 2 cut(s) 11, 29
Cfr9I CCCGGG 1 cut(s) 194
CviAII CATG 3 cut(s) 77, 96, 351
CviJI RGCY 7 cut(s) 31, 40, 118, 173, 186, 256, 298
CviKI_1 RGCY 7 cut(s) 31, 40, 118, 173, 186, 256, 298
DdeI CTNAG 1 cut(s) 332
DpnI GATC 2 cut(s) 66, 160
DpnII GATC 2 cut(s) 64, 158
EaeI YGGCCR 2 cut(s) 171, 254
EagI CGGCCG 2 cut(s) 171, 254
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EciI GGCGGA 1 cut(s) 168
EclXI CGGCCG 2 cut(s) 171, 254
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 11
Eco52I CGGCCG 2 cut(s) 171, 254
Eco88I CYCGRG 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 3 cut(s) 80, 99, 354
FaiI YATR 4 cut(s) 78, 97, 263, 352
FatI CATG 3 cut(s) 76, 95, 350
Fnu4HI GCNGC 5 cut(s) 32, 41, 174, 205, 214
FokI GGATG 1 cut(s) 270
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 5 cut(s) 32, 41, 174, 205, 214
FspBI CTAG 1 cut(s) 299
GlaI GCGC 3 cut(s) 217, 273, 281
GluI GCNGC 5 cut(s) 32, 41, 174, 205, 214
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 4 cut(s) 31, 118, 173, 256
HapII CCGG 6 cut(s) 17, 35, 44, 182, 195, 257
HhaI GCGC 3 cut(s) 218, 274, 282
Hin1II CATG 3 cut(s) 80, 99, 354
Hin6I GCGC 3 cut(s) 216, 272, 280
HinP1I GCGC 3 cut(s) 216, 272, 280
HinfI GANTC 1 cut(s) 305
HpaII CCGG 6 cut(s) 17, 35, 44, 182, 195, 257
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 3 cut(s) 60, 172, 255
HpyAV CCTTC 1 cut(s) 129
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 82, 164, 204
HpyF10VI GCNNNNNNNGC 6 cut(s) 37, 40, 170, 210, 213, 253
HpyF3I CTNAG 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 3 cut(s) 80, 99, 354
HspAI GCGC 3 cut(s) 216, 272, 280
Kpn2I TCCGGA 1 cut(s) 16
Kzo9I GATC 2 cut(s) 64, 158
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 6 cut(s) 30, 48, 57, 195, 208, 270
Lsp1109I GCAGC 2 cut(s) 27, 216
MaeI CTAG 1 cut(s) 299
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 266, 320
MalI GATC 2 cut(s) 66, 160
MbiI CCGCTC 1 cut(s) 176
MboI GATC 2 cut(s) 64, 158
MboII GAAGA 1 cut(s) 104
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 2 cut(s) 188, 238
MnlI CCTC 3 cut(s) 24, 120, 230
MroI TCCGGA 1 cut(s) 16
MseI TTAA 1 cut(s) 276
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 6 cut(s) 17, 35, 44, 182, 195, 257
MspR9I CCNGG 5 cut(s) 36, 183, 195, 196, 258
MvnI CGCG 3 cut(s) 55, 216, 272
MwoI GCNNNNNNNGC 6 cut(s) 37, 40, 170, 210, 213, 253
NciI CCSGG 5 cut(s) 36, 183, 195, 196, 258
NdeII GATC 2 cut(s) 64, 158
NlaIII CATG 3 cut(s) 80, 99, 354
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 5 cut(s) 33, 42, 175, 206, 215
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 2 cut(s) 11, 29
PsuI RGATCY 1 cut(s) 158
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 5 cut(s) 32, 41, 174, 205, 214
Sau3AI GATC 2 cut(s) 64, 158
Sau96I GGNCC 2 cut(s) 11, 29
ScrFI CCNGG 5 cut(s) 36, 183, 195, 196, 258
SduI GDGCHC 2 cut(s) 188, 238
SetI ASST 3 cut(s) 61, 105, 268
SinI GGWCC 1 cut(s) 11
SmaI CCCGGG 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SsiI CCGC 8 cut(s) 32, 62, 174, 179, 211, 214, 311, 336
SspI AATATT 1 cut(s) 140
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 5 cut(s) 34, 181, 193, 194, 256
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 67, 343
TauI GCSGC 3 cut(s) 34, 176, 216
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 2 cut(s) 40, 204
Tsp45I GTSAC 1 cut(s) 266
TspMI CCCGGG 1 cut(s) 194
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 11
XmaI CCCGGG 1 cut(s) 194
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.