Rroxscaffold_1G00000050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000098
Physical Location & Seq
Forward (+)
47470 .. 48027
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000050.1

Sequence Viewer

Length: 303 bp
ATGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTATCTGCACCGACGGCCGCTCCGCCGGGCTCACGCCCCAGGTTTTGCAGCGACCGCCCGCGCCCTCCTACTCATCGGGGCCTGGCACTTGCCCCGACGGCCCGGGTATAGGTCACGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.12

Weight (kDa)

8.64

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc36I ACCTGC 1 cut(s) 269
AccB7I CCANNNNNTGG 1 cut(s) 80
AccBSI CCGCTC 1 cut(s) 141
AccII CGCG 3 cut(s) 56, 182, 239
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 7 cut(s) 32, 63, 78, 139, 144, 176, 180
AcoI YGGCCR 1 cut(s) 136
AfiI CCNNNNNNNGG 5 cut(s) 80, 93, 109, 230, 260
AflII CTTAAG 1 cut(s) 242
AgsI TTSAA 1 cut(s) 26
AjiI CACGTC 1 cut(s) 60
AjnI CCWGG 3 cut(s) 108, 159, 202
Alw21I GWGCWC 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 223
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 4 cut(s) 29, 136, 200, 220
ApeKI GCWGC 1 cut(s) 169
AspLEI GCGC 4 cut(s) 42, 184, 241, 249
AspS9I GGNCC 5 cut(s) 11, 29, 83, 200, 221
AsuC2I CCSGG 4 cut(s) 36, 148, 224, 225
AsuHPI GGTGA 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 223
AvaII GGWCC 2 cut(s) 11, 83
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 258
BceAI ACGGC 3 cut(s) 87, 151, 235
BciT130I CCWGG 3 cut(s) 110, 161, 204
BcnI CCSGG 4 cut(s) 36, 148, 224, 225
BfaI CTAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 250
BfrI CTTAAG 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 269
BglI GCCNNNNNGGC 2 cut(s) 37, 219
BisI GCNGC 4 cut(s) 32, 78, 139, 170
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 4 cut(s) 33, 79, 140, 171
Bme1390I CCNGG 7 cut(s) 36, 110, 148, 161, 204, 224, 225
Bme18I GGWCC 2 cut(s) 11, 83
BmeT110I CYCGRG 1 cut(s) 223
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 5 cut(s) 11, 29, 83, 200, 221
BmiI GGNNCC 2 cut(s) 85, 201
BmrFI CCNGG 7 cut(s) 36, 110, 148, 161, 204, 224, 225
Bpu1102I GCTNAGC 1 cut(s) 98
BpuMI CCSGG 4 cut(s) 36, 148, 224, 225
BsaJI CCNNGG 4 cut(s) 35, 109, 159, 223
BsaWI WCCGGW 2 cut(s) 16, 44
BsaXI ACNNNNNCTCC 4 cut(s) 75, 105, 125, 155
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 93, 109, 230, 260
BseAI TCCGGA 1 cut(s) 16
BseBI CCWGG 3 cut(s) 110, 161, 204
BseDI CCNNGG 4 cut(s) 35, 109, 159, 223
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 5 cut(s) 80, 93, 109, 230, 260
BseMII CTCAG 1 cut(s) 89
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 112
Bsh1236I CGCG 3 cut(s) 56, 182, 239
Bsh1285I CGRYCG 2 cut(s) 139, 176
BshFI GGCC 4 cut(s) 31, 138, 202, 222
BsiEI CGRYCG 2 cut(s) 139, 176
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 223
BsiSI CCGG 6 cut(s) 17, 35, 45, 94, 147, 224
BslI CCNNNNNNNGG 5 cut(s) 80, 93, 109, 230, 260
BsnI GGCC 4 cut(s) 31, 138, 202, 222
BsoBI CYCGRG 1 cut(s) 223
Bsp1286I GDGCHC 2 cut(s) 70, 153
Bsp13I TCCGGA 1 cut(s) 16
Bsp1720I GCTNAGC 1 cut(s) 98
BspACI CCGC 7 cut(s) 32, 63, 78, 139, 144, 176, 180
BspANI GGCC 4 cut(s) 31, 138, 202, 222
BspCNI CTCAG 1 cut(s) 90
BspEI TCCGGA 1 cut(s) 16
BspFNI CGCG 3 cut(s) 56, 182, 239
BspLI GGNNCC 2 cut(s) 85, 201
BspMI ACCTGC 1 cut(s) 269
BspQI GCTCTTC 1 cut(s) 75
BspTI CTTAAG 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 141
BssECI CCNNGG 4 cut(s) 35, 109, 159, 223
Bst2UI CCWGG 3 cut(s) 110, 161, 204
Bst6I CTCTTC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 120, 180
BstDEI CTNAG 2 cut(s) 98, 300
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 3 cut(s) 56, 182, 239
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 4 cut(s) 42, 184, 241, 249
BstMCI CGRYCG 2 cut(s) 139, 176
BstMWI GCNNNNNNNGC 5 cut(s) 37, 74, 135, 175, 219
BstNI CCWGG 3 cut(s) 110, 161, 204
BstSCI CCNGG 7 cut(s) 34, 108, 146, 159, 202, 222, 223
BstUI CGCG 3 cut(s) 56, 182, 239
BstV1I GCAGC 1 cut(s) 181
BstZI CGGCCG 1 cut(s) 136
BsuRI GGCC 4 cut(s) 31, 138, 202, 222
BtrI CACGTC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 2 cut(s) 120, 180
CaiI CAGNNNCTG 1 cut(s) 80
CfoI GCGC 4 cut(s) 42, 184, 241, 249
Cfr13I GGNCC 5 cut(s) 11, 29, 83, 200, 221
Cfr9I CCCGGG 1 cut(s) 223
DdeI CTNAG 2 cut(s) 98, 300
EaeI YGGCCR 1 cut(s) 136
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 11, 83
Eco52I CGGCCG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 3 cut(s) 108, 159, 202
EcoT38I GRGCYC 1 cut(s) 153
FaiI YATR 1 cut(s) 230
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 4 cut(s) 32, 78, 139, 170
FokI GGATG 1 cut(s) 237
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 4 cut(s) 32, 78, 139, 170
FspBI CTAG 1 cut(s) 266
GlaI GCGC 4 cut(s) 41, 183, 240, 248
GluI GCNGC 4 cut(s) 32, 78, 139, 170
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 4 cut(s) 31, 138, 202, 222
HapII CCGG 6 cut(s) 17, 35, 45, 94, 147, 224
HhaI GCGC 4 cut(s) 42, 184, 241, 249
Hin6I GCGC 4 cut(s) 40, 182, 239, 247
HinP1I GCGC 4 cut(s) 40, 182, 239, 247
HinfI GANTC 1 cut(s) 272
HpaII CCGG 6 cut(s) 17, 35, 45, 94, 147, 224
HphI GGTGA 1 cut(s) 293
Hpy188III TCNNGA 1 cut(s) 17
Hpy99I CGWCG 3 cut(s) 61, 137, 221
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 129, 169
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 74, 135, 175, 219
HpyF3I CTNAG 2 cut(s) 98, 300
HpySE526I ACGT 1 cut(s) 59
HspAI GCGC 4 cut(s) 40, 182, 239, 247
Kpn2I TCCGGA 1 cut(s) 16
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 146
Lsp1109I GCAGC 1 cut(s) 181
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 2 cut(s) 233, 288
MbiI CCGCTC 1 cut(s) 141
MboII GAAGA 1 cut(s) 62
MhlI GDGCHC 2 cut(s) 70, 153
MnlI CCTC 3 cut(s) 24, 101, 196
MroI TCCGGA 1 cut(s) 16
MseI TTAA 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 80
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 6 cut(s) 17, 35, 45, 94, 147, 224
MspR9I CCNGG 7 cut(s) 36, 110, 148, 161, 204, 224, 225
MvaI CCWGG 3 cut(s) 110, 161, 204
MvnI CGCG 3 cut(s) 56, 182, 239
MwoI GCNNNNNNNGC 5 cut(s) 37, 74, 135, 175, 219
NciI CCSGG 4 cut(s) 36, 148, 224, 225
NlaIV GGNNCC 2 cut(s) 85, 201
NmuCI GTSAC 1 cut(s) 233
PaqCI CACCTGC 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 4 cut(s) 33, 79, 140, 171
Psp6I CCWGG 3 cut(s) 108, 159, 202
PspGI CCWGG 3 cut(s) 108, 159, 202
PspN4I GGNNCC 2 cut(s) 85, 201
PspPI GGNCC 5 cut(s) 11, 29, 83, 200, 221
PstNI CAGNNNCTG 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 4 cut(s) 32, 78, 139, 170
Sau96I GGNCC 5 cut(s) 11, 29, 83, 200, 221
ScrFI CCNGG 7 cut(s) 36, 110, 148, 161, 204, 224, 225
SduI GDGCHC 2 cut(s) 70, 153
SetI ASST 5 cut(s) 62, 93, 165, 235, 283
SinI GGWCC 2 cut(s) 11, 83
SmaI CCCGGG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SsiI CCGC 7 cut(s) 32, 63, 78, 139, 144, 176, 180
SspMI CTAG 1 cut(s) 266
StyD4I CCNGG 7 cut(s) 34, 108, 146, 159, 202, 222, 223
TaiI ACGT 1 cut(s) 62
TauI GCSGC 3 cut(s) 34, 80, 141
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 233
TspMI CCCGGG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 80
Vha464I CTTAAG 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 11, 83
XmaI CCCGGG 1 cut(s) 223
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.