Rroxscaffold_18G00446060

DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000018
OG0000098
Physical Location & Seq
Forward (+)
26510 .. 28036
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_18G00446060.1

Sequence Viewer

Length: 921 bp
ATGTCTTCCGCCCGGATCAGCCCGCCGGCTGTGCTTGGGTCCAAAAAGAGGGGCGCCCCCGCCTCCGATTCACGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCCGAAGGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGTCTTCTTTCCCCGCCGATTCTCGCCAAGCCCGTTCCCTTGGCCGTGGTTTCGCCGGATAGTAGACAGACAGGGGAATCTCATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCGCAGCACCGGCGTAAATCACATTGCGTTAACATCCGCAGGACCATCGCAATGCTTTGTTTTAATTAAACGGTCGGATTCCCCTTGTCCGTACCGGTTCGAGTCGGCGTTGAACGCCGGGGGAAAGCCCCCGAAGGAGCGTTCCCCGGTCGAGTCCCCGGCGGCACGCGGCGACCCGCTCTCGCCGCGGAAGCAGCTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGGCCCGGGACCCCCGTGCCCAGCCCTCGAGCCAATCCTTTTCCCCGAGATCTGCACCGACGGCGCCGGGCTCACGCCCCGGGTTTTGCGGCGACCCGCGCGCCCTCCTACTCATCGGGGCACGGCACTTGCCCCGACGGCGGGTATAGGTCACGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCGCGCGTAGTTGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCGGTTCTGCTTACCAAAAAAATGGCCCACTTGGAGCTCTCGATTCCTTGGCGTGGCTCAACAAAGCAGCCACGCCGTCCTACCTATTTAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

32.66

Weight (kDa)

10.41

Isoelectric Point (pI)

61.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 53, 644, 789
AccBSI CCGCTC 1 cut(s) 532
AccI GTMKAC 1 cut(s) 250
AccII CGCG 8 cut(s) 325, 522, 541, 680, 682, 737, 778, 780
AclI AACGTT 1 cut(s) 89
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 1 cut(s) 335
AcyI GRCGYC 2 cut(s) 54, 645
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 8 cut(s) 48, 328, 721, 722, 758, 799, 806, 876
AflII CTTAAG 2 cut(s) 290, 740
AgeI ACCGGT 1 cut(s) 447
AgsI TTSAA 2 cut(s) 335, 466
AluBI AGCT 3 cut(s) 180, 550, 860
AluI AGCT 3 cut(s) 180, 550, 860
Alw21I GWGCWC 1 cut(s) 862
AlwI GGATC 1 cut(s) 23
Ama87I CYCGRG 5 cut(s) 551, 586, 608, 626, 660
AoxI GGCC 3 cut(s) 228, 583, 847
ApaI GGGCCC 1 cut(s) 587
ApeKI GCWGC 3 cut(s) 357, 547, 890
ApoI RAATTY 1 cut(s) 335
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AsiGI ACCGGT 1 cut(s) 447
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 9 cut(s) 56, 327, 647, 682, 684, 739, 747, 778, 780
AspS9I GGNCC 6 cut(s) 39, 395, 583, 584, 590, 848
AsuHPI GGTGA 1 cut(s) 553
AvaI CYCGRG 5 cut(s) 551, 586, 608, 626, 660
AvaII GGWCC 3 cut(s) 39, 395, 590
BaeGI GKGCMC 4 cut(s) 587, 602, 704, 792
BanI GGYRCC 3 cut(s) 53, 644, 789
BanII GRGCYC 3 cut(s) 587, 654, 862
BarI GAAGNNNNNNTAC 2 cut(s) 787, 819
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 862
BbvI GCAGC 3 cut(s) 369, 559, 902
BccI CCATC 2 cut(s) 406, 756
BceAI ACGGC 6 cut(s) 215, 299, 658, 720, 735, 883
BcgI CGANNNNNNTGC 2 cut(s) 381, 415
BfaI CTAG 2 cut(s) 170, 764
BfoI RGCGCY 3 cut(s) 57, 648, 748
BfrI CTTAAG 2 cut(s) 290, 740
BglI GCCNNNNNGGC 1 cut(s) 719
BglII AGATCT 1 cut(s) 630
BisI GCNGC 7 cut(s) 358, 516, 523, 539, 548, 671, 891
BlsI GCNGC 7 cut(s) 359, 517, 524, 540, 549, 672, 892
Bme18I GGWCC 3 cut(s) 39, 395, 590
BmeT110I CYCGRG 5 cut(s) 551, 586, 608, 626, 660
BmgT120I GGNCC 6 cut(s) 39, 395, 583, 584, 590, 848
BmiI GGNNCC 9 cut(s) 40, 55, 126, 584, 585, 591, 592, 646, 791
BmsI GCATC 1 cut(s) 828
BoxI GACNNNNGTC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 182
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpuEI CTTGAG 1 cut(s) 131
BsaHI GRCGYC 2 cut(s) 54, 645
BsaWI WCCGGW 2 cut(s) 447, 806
Bsc4I CCNNNNNNNGG 8 cut(s) 48, 328, 721, 722, 758, 799, 806, 876
Bse118I RCCGGY 4 cut(s) 25, 362, 447, 824
Bse3DI GCAATG 2 cut(s) 375, 410
BseGI GGATG 3 cut(s) 386, 748, 812
BseLI CCNNNNNNNGG 8 cut(s) 48, 328, 721, 722, 758, 799, 806, 876
BseMI GCAATG 2 cut(s) 375, 410
BsePI GCGCGC 2 cut(s) 680, 776
BseSI GKGCMC 4 cut(s) 587, 602, 704, 792
BseXI GCAGC 3 cut(s) 369, 559, 902
BseYI CCCAGC 1 cut(s) 601
BsgI GTGCAG 1 cut(s) 619
Bsh1236I CGCG 8 cut(s) 325, 522, 541, 680, 682, 737, 778, 780
Bsh1285I CGRYCG 2 cut(s) 428, 504
BshFI GGCC 3 cut(s) 230, 585, 849
BshNI GGYRCC 3 cut(s) 53, 644, 789
BshTI ACCGGT 1 cut(s) 447
BsiEI CGRYCG 2 cut(s) 428, 504
BsiHKAI GWGCWC 1 cut(s) 862
BsiHKCI CYCGRG 5 cut(s) 551, 586, 608, 626, 660
BslFI GGGAC 2 cut(s) 493, 603
BslI CCNNNNNNNGG 8 cut(s) 48, 328, 721, 722, 758, 799, 806, 876
BsmFI GGGAC 2 cut(s) 493, 603
BsnI GGCC 3 cut(s) 230, 585, 849
BsoBI CYCGRG 5 cut(s) 551, 586, 608, 626, 660
Bsp120I GGGCCC 1 cut(s) 583
Bsp1286I GDGCHC 6 cut(s) 587, 602, 654, 704, 792, 862
Bsp143I GATC 2 cut(s) 15, 630
BspANI GGCC 3 cut(s) 230, 585, 849
BspFNI CGCG 8 cut(s) 325, 522, 541, 680, 682, 737, 778, 780
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 9 cut(s) 40, 55, 126, 584, 585, 591, 592, 646, 791
BspPI GGATC 1 cut(s) 23
BspT107I GGYRCC 3 cut(s) 53, 644, 789
BspTI CTTAAG 2 cut(s) 290, 740
BsrBI CCGCTC 1 cut(s) 532
BsrDI GCAATG 2 cut(s) 375, 410
BsrFI RCCGGY 4 cut(s) 25, 362, 447, 824
BssAI RCCGGY 4 cut(s) 25, 362, 447, 824
BssHII GCGCGC 2 cut(s) 680, 776
BssMI GATC 2 cut(s) 15, 630
BssNI GRCGYC 2 cut(s) 54, 645
BssT1I CCWWGG 2 cut(s) 225, 870
Bst4CI ACNGT 2 cut(s) 426, 794
BstACI GRCGYC 2 cut(s) 54, 645
BstAFI CTTAAG 2 cut(s) 290, 740
BstC8I GCNNGC 5 cut(s) 23, 27, 520, 682, 778
BstDSI CCRYGG 2 cut(s) 231, 539
BstF5I GGATG 3 cut(s) 386, 748, 812
BstFNI CGCG 8 cut(s) 325, 522, 541, 680, 682, 737, 778, 780
BstH2I RGCGCY 3 cut(s) 57, 648, 748
BstHHI GCGC 9 cut(s) 56, 327, 647, 682, 684, 739, 747, 778, 780
BstKTI GATC 2 cut(s) 18, 633
BstMBI GATC 2 cut(s) 15, 630
BstMCI CGRYCG 2 cut(s) 428, 504
BstPAI GACNNNNGTC 1 cut(s) 172
BstSLI GKGCMC 4 cut(s) 587, 602, 704, 792
BstUI CGCG 8 cut(s) 325, 522, 541, 680, 682, 737, 778, 780
BstV1I GCAGC 3 cut(s) 369, 559, 902
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 630
BstXI CCANNNNNNTGG 1 cut(s) 845
BstYI RGATCY 1 cut(s) 630
BsuRI GGCC 3 cut(s) 230, 585, 849
BtgI CCRYGG 2 cut(s) 231, 539
BtgZI GCGATG 2 cut(s) 384, 805
BtsCI GGATG 3 cut(s) 386, 748, 812
Cac8I GCNNGC 5 cut(s) 23, 27, 520, 682, 778
CciI TCATGA 1 cut(s) 268
CfoI GCGC 9 cut(s) 56, 327, 647, 682, 684, 739, 747, 778, 780
Cfr10I RCCGGY 4 cut(s) 25, 362, 447, 824
Cfr13I GGNCC 6 cut(s) 39, 395, 583, 584, 590, 848
Cfr42I CCGCGG 1 cut(s) 542
Cfr9I CCCGGG 2 cut(s) 586, 660
Csp6I GTAC 1 cut(s) 445
CspAI ACCGGT 1 cut(s) 447
CviAII CATG 1 cut(s) 269
CviQI GTAC 1 cut(s) 445
DinI GGCGCC 2 cut(s) 55, 646
DpnI GATC 2 cut(s) 17, 632
DpnII GATC 2 cut(s) 15, 630
DraI TTTAAA 1 cut(s) 913
EaeI YGGCCR 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 860
Eco130I CCWWGG 2 cut(s) 225, 870
Eco24I GRGCYC 3 cut(s) 587, 654, 862
Eco47I GGWCC 3 cut(s) 39, 395, 590
Eco53kI GAGCTC 1 cut(s) 860
Eco88I CYCGRG 5 cut(s) 551, 586, 608, 626, 660
EcoICRI GAGCTC 1 cut(s) 860
EcoO109I RGGNCCY 2 cut(s) 583, 590
EcoT14I CCWWGG 2 cut(s) 225, 870
EcoT38I GRGCYC 3 cut(s) 587, 654, 862
EgeI GGCGCC 2 cut(s) 55, 646
EheI GGCGCC 2 cut(s) 55, 646
ErhI CCWWGG 2 cut(s) 225, 870
FaeI CATG 1 cut(s) 272
FaiI YATR 4 cut(s) 135, 270, 302, 728
FaqI GGGAC 2 cut(s) 493, 603
FatI CATG 1 cut(s) 268
FauI CCCGC 9 cut(s) 30, 67, 207, 319, 330, 537, 685, 715, 824
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 7 cut(s) 358, 516, 523, 539, 548, 671, 891
FokI GGATG 3 cut(s) 373, 735, 799
FriOI GRGCYC 3 cut(s) 587, 654, 862
Fsp4HI GCNGC 7 cut(s) 358, 516, 523, 539, 548, 671, 891
FspBI CTAG 2 cut(s) 170, 764
GlaI GCGC 9 cut(s) 55, 326, 646, 681, 683, 738, 746, 777, 779
GluI GCNGC 7 cut(s) 358, 516, 523, 539, 548, 671, 891
GsaI CCCAGC 1 cut(s) 605
HaeII RGCGCY 3 cut(s) 57, 648, 748
HaeIII GGCC 3 cut(s) 230, 585, 849
HhaI GCGC 9 cut(s) 56, 327, 647, 682, 684, 739, 747, 778, 780
Hin1I GRCGYC 2 cut(s) 54, 645
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 9 cut(s) 54, 325, 645, 680, 682, 737, 745, 776, 778
HinP1I GCGC 9 cut(s) 54, 325, 645, 680, 682, 737, 745, 776, 778
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HpaI GTTAAC 1 cut(s) 384
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 4 cut(s) 251, 319, 384, 561
Hpy188I TCNGA 3 cut(s) 67, 167, 430
Hpy188III TCNNGA 3 cut(s) 72, 269, 863
Hpy8I GTNNAC 4 cut(s) 251, 319, 384, 561
Hpy99I CGWCG 3 cut(s) 576, 644, 721
HpyAV CCTTC 2 cut(s) 115, 481
HpyCH4III ACNGT 2 cut(s) 426, 794
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 636
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 2 cut(s) 54, 645
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 9 cut(s) 54, 325, 645, 680, 682, 737, 745, 776, 778
KasI GGCGCC 2 cut(s) 53, 644
KflI GGGWCCC 1 cut(s) 590
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 384
KspI CCGCGG 1 cut(s) 542
Kzo9I GATC 2 cut(s) 15, 630
LmnI GCTCC 3 cut(s) 130, 490, 857
Lsp1109I GCAGC 3 cut(s) 369, 559, 902
LweI GCATC 1 cut(s) 828
MaeI CTAG 2 cut(s) 170, 764
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 3 cut(s) 304, 731, 794
MalI GATC 2 cut(s) 17, 632
MbiI CCGCTC 1 cut(s) 532
MboI GATC 2 cut(s) 15, 630
MboII GAAGA 2 cut(s) 182, 332
MflI RGATCY 1 cut(s) 630
MhlI GDGCHC 6 cut(s) 587, 602, 654, 704, 792, 862
MluCI AATT 2 cut(s) 335, 417
Mly113I GGCGCC 2 cut(s) 54, 645
MlyI GAGTC 4 cut(s) 182, 306, 464, 515
MmeI TCCRAC 2 cut(s) 145, 408
MnlI CCTC 6 cut(s) 42, 73, 153, 268, 617, 696
MroNI GCCGGC 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 7 cut(s) 92, 291, 383, 416, 420, 741, 912
MslI CAYNNNNRTG 1 cut(s) 403
MspA1I CMGCKG 1 cut(s) 541
MspCI CTTAAG 2 cut(s) 290, 740
MvnI CGCG 8 cut(s) 325, 522, 541, 680, 682, 737, 778, 780
NaeI GCCGGC 1 cut(s) 27
NarI GGCGCC 2 cut(s) 54, 645
NdeII GATC 2 cut(s) 15, 630
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 9 cut(s) 40, 55, 126, 584, 585, 591, 592, 646, 791
NmuCI GTSAC 1 cut(s) 731
PacI TTAATTAA 1 cut(s) 420
PaeR7I CTCGAG 2 cut(s) 551, 608
PagI TCATGA 1 cut(s) 268
PauI GCGCGC 2 cut(s) 680, 776
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdiI GCCGGC 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 6 cut(s) 68, 205, 263, 431, 770, 866
PinAI ACCGGT 1 cut(s) 447
PkrI GCNGC 7 cut(s) 359, 517, 524, 540, 549, 672, 892
PleI GAGTC 4 cut(s) 181, 305, 463, 514
PluTI GGCGCC 2 cut(s) 57, 648
PpsI GAGTC 4 cut(s) 181, 305, 463, 514
PpuMI RGGWCCY 1 cut(s) 590
PshAI GACNNNNGTC 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 862
Psp1406I AACGTT 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 590
PspFI CCCAGC 1 cut(s) 601
PspN4I GGNNCC 9 cut(s) 40, 55, 126, 584, 585, 591, 592, 646, 791
PspOMI GGGCCC 1 cut(s) 583
PspPI GGNCC 6 cut(s) 39, 395, 583, 584, 590, 848
PspPPI RGGWCCY 1 cut(s) 590
PspXI VCTCGAGB 2 cut(s) 551, 608
PsuI RGATCY 1 cut(s) 630
PteI GCGCGC 2 cut(s) 680, 776
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
RseI CAYNNNNRTG 1 cut(s) 403
SacI GAGCTC 1 cut(s) 862
SacII CCGCGG 1 cut(s) 542
SaqAI TTAA 7 cut(s) 92, 291, 383, 416, 420, 741, 912
SatI GCNGC 7 cut(s) 358, 516, 523, 539, 548, 671, 891
Sau3AI GATC 2 cut(s) 15, 630
Sau96I GGNCC 6 cut(s) 39, 395, 583, 584, 590, 848
SchI GAGTC 4 cut(s) 182, 306, 464, 515
SduI GDGCHC 6 cut(s) 587, 602, 654, 704, 792, 862
SetI ASST 9 cut(s) 92, 145, 182, 190, 291, 552, 733, 862, 909
SfaNI GCATC 1 cut(s) 828
SfoI GGCGCC 2 cut(s) 55, 646
Sfr274I CTCGAG 2 cut(s) 551, 608
Sfr303I CCGCGG 1 cut(s) 542
SgrAI CRCCGGYG 1 cut(s) 362
SgrBI CCGCGG 1 cut(s) 542
SinI GGWCC 3 cut(s) 39, 395, 590
SlaI CTCGAG 2 cut(s) 551, 608
SmaI CCCGGG 2 cut(s) 588, 662
SmiMI CAYNNNNRTG 1 cut(s) 403
SmlI CTYRAG 5 cut(s) 146, 290, 551, 608, 740
SmoI CTYRAG 5 cut(s) 146, 290, 551, 608, 740
Sse9I AATT 2 cut(s) 335, 417
SspDI GGCGCC 2 cut(s) 53, 644
SspMI CTAG 2 cut(s) 170, 764
SstI GAGCTC 1 cut(s) 862
StyI CCWWGG 2 cut(s) 225, 870
TaaI ACNGT 2 cut(s) 426, 794
TaiI ACGT 1 cut(s) 92
TaqI TCGA 5 cut(s) 453, 504, 552, 609, 864
TasI AATT 2 cut(s) 335, 417
TauI GCSGC 4 cut(s) 518, 525, 541, 673
TfiI GAWTC 6 cut(s) 68, 205, 263, 431, 770, 866
Tru1I TTAA 7 cut(s) 92, 291, 383, 416, 420, 741, 912
Tru9I TTAA 7 cut(s) 92, 291, 383, 416, 420, 741, 912
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 3 cut(s) 357, 547, 890
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 1 cut(s) 801
TspGWI ACGGA 1 cut(s) 432
TspMI CCCGGG 2 cut(s) 586, 660
Vha464I CTTAAG 2 cut(s) 290, 740
VpaK11BI GGWCC 3 cut(s) 39, 395, 590
XapI RAATTY 1 cut(s) 335
XhoI CTCGAG 2 cut(s) 551, 608
XmaI CCCGGG 2 cut(s) 586, 660
XmiI GTMKAC 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 2 cut(s) 170, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.