Rroxscaffold_31G00438220

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000031
OG0000098
Physical Location & Seq
Forward (+)
141487 .. 142834
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_31G00438220.1

Sequence Viewer

Length: 711 bp
ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCGCTTATCCCCGTGGTAACTTTTCCGACACCTCTAGCTTTAAATTCCAAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACCGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGTATGTGCCGCCCCACCCAAACTCCCCACCCGACAATGTCTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGGGCAGTGCCCCGCCTCCGATTCACGGAATAAGCGTTCACCTTGGAGACCCGATGCGGTTATGAGTACGACCGGCGTGAATGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCCGCCGGACCCTACCTCCGCCGAGCCGTTTCCAGGTGGGCAGGTGTTAAACGAAAAGATAACTCTTCCCGAGGCCCCCGCCGACGTCTCCGACTCCCTAACGTTGCCGTCAACCACCACGTCCCGGTTCAGAATTTTAACCCGATTCCCTTTTCGGTTCGCGCGAGACGCGCTATCGACGGGTTACCCGCCTCTTAGGATCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 zf-CCHC_4 zf-RVT

Protein Analysis

236

Amino Acids

25.89

Weight (kDa)

10.5

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 252, 535
AatII GACGTC 1 cut(s) 591
Acc36I ACCTGC 2 cut(s) 252, 535
AccII CGCG 4 cut(s) 483, 665, 667, 674
AccIII TCCGGA 1 cut(s) 443
AclI AACGTT 1 cut(s) 605
AclWI GGATC 4 cut(s) 34, 136, 319, 710
AcsI RAATTY 2 cut(s) 110, 636
AcyI GRCGYC 1 cut(s) 588
AfaI GTAC 2 cut(s) 163, 415
AfiI CCNNNNNNNGG 4 cut(s) 346, 372, 536, 627
AgsI TTSAA 1 cut(s) 453
AjiI CACGTC 2 cut(s) 487, 624
AjnI CCWGG 1 cut(s) 535
AjuI GAANNNNNNNTTGG 2 cut(s) 316, 348
AloI GAACNNNNNNTCC 2 cut(s) 367, 399
AluBI AGCT 3 cut(s) 105, 186, 229
AluI AGCT 3 cut(s) 105, 186, 229
Alw21I GWGCWC 2 cut(s) 231, 497
Alw26I GTCTC 3 cut(s) 388, 595, 663
AlwI GGATC 4 cut(s) 34, 136, 319, 710
Ama87I CYCGRG 1 cut(s) 572
Aor13HI TCCGGA 1 cut(s) 443
AoxI GGCC 3 cut(s) 136, 456, 576
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 2 cut(s) 110, 636
AspLEI GCGC 3 cut(s) 469, 667, 676
AspS9I GGNCC 5 cut(s) 337, 438, 456, 511, 577
AsuC2I CCSGG 3 cut(s) 309, 463, 628
AsuHPI GGTGA 1 cut(s) 378
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 3 cut(s) 337, 438, 511
BaeGI GKGCMC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 231
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 2 cut(s) 231, 497
BbvI GCAGC 1 cut(s) 45
BceAI ACGGC 2 cut(s) 514, 595
BciT130I CCWGG 1 cut(s) 537
BcnI CCSGG 3 cut(s) 309, 463, 628
BcoDI GTCTC 3 cut(s) 388, 595, 663
BfaI CTAG 1 cut(s) 102
BfuAI ACCTGC 2 cut(s) 252, 535
BglI GCCNNNNNGGC 1 cut(s) 464
BisI GCNGC 4 cut(s) 59, 69, 270, 459
BlsI GCNGC 4 cut(s) 60, 70, 271, 460
Bme1390I CCNGG 4 cut(s) 309, 463, 537, 628
Bme18I GGWCC 3 cut(s) 337, 438, 511
BmeT110I CYCGRG 1 cut(s) 572
BmgBI CACGTC 2 cut(s) 487, 624
BmgT120I GGNCC 5 cut(s) 337, 438, 456, 511, 577
BmiI GGNNCC 3 cut(s) 338, 513, 579
BmrFI CCNGG 4 cut(s) 309, 463, 537, 628
BmsI GCATC 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 293
BpuMI CCSGG 3 cut(s) 309, 463, 628
Bsa29I ATCGAT 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 588
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 4 cut(s) 79, 389, 462, 573
BsaWI WCCGGW 3 cut(s) 164, 443, 471
BsaXI ACNNNNNCTCC 4 cut(s) 267, 297, 503, 533
Bsc4I CCNNNNNNNGG 4 cut(s) 346, 372, 536, 627
Bse118I RCCGGY 1 cut(s) 419
BseAI TCCGGA 1 cut(s) 443
BseBI CCWGG 1 cut(s) 537
BseCI ATCGAT 1 cut(s) 131
BseDI CCNNGG 4 cut(s) 79, 389, 462, 573
BseLI CCNNNNNNNGG 4 cut(s) 346, 372, 536, 627
BseSI GKGCMC 1 cut(s) 359
BseXI GCAGC 1 cut(s) 45
Bsh1236I CGCG 4 cut(s) 483, 665, 667, 674
Bsh1285I CGRYCG 1 cut(s) 420
BshFI GGCC 3 cut(s) 138, 458, 578
BshVI ATCGAT 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 420
BsiHKAI GWGCWC 2 cut(s) 231, 497
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 8 cut(s) 165, 309, 420, 444, 462, 472, 509, 628
BslFI GGGAC 1 cut(s) 610
BslI CCNNNNNNNGG 4 cut(s) 346, 372, 536, 627
BsmAI GTCTC 3 cut(s) 388, 595, 663
BsmBI CGTCTC 2 cut(s) 595, 663
BsmFI GGGAC 1 cut(s) 610
BsnI GGCC 3 cut(s) 138, 458, 578
Bso31I GGTCTC 1 cut(s) 388
BsoBI CYCGRG 1 cut(s) 572
Bsp1286I GDGCHC 3 cut(s) 231, 359, 497
Bsp13I TCCGGA 1 cut(s) 443
Bsp143I GATC 4 cut(s) 26, 128, 311, 702
BspANI GGCC 3 cut(s) 138, 458, 578
BspDI ATCGAT 1 cut(s) 131
BspEI TCCGGA 1 cut(s) 443
BspFNI CGCG 4 cut(s) 483, 665, 667, 674
BspLI GGNNCC 3 cut(s) 338, 513, 579
BspMI ACCTGC 2 cut(s) 252, 535
BspPI GGATC 4 cut(s) 34, 136, 319, 710
BspQI GCTCTTC 2 cut(s) 4, 502
BspTNI GGTCTC 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 419
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 4 cut(s) 79, 389, 462, 573
BssMI GATC 4 cut(s) 26, 128, 311, 702
BssNI GRCGYC 1 cut(s) 588
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 389
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 2 cut(s) 151, 262
Bst6I CTCTTC 3 cut(s) 4, 502, 573
BstACI GRCGYC 1 cut(s) 588
BstC8I GCNNGC 3 cut(s) 319, 329, 506
BstDEI CTNAG 2 cut(s) 235, 698
BstDSI CCRYGG 1 cut(s) 79
BstEII GGTNACC 1 cut(s) 686
BstFNI CGCG 4 cut(s) 483, 665, 667, 674
BstHHI GCGC 3 cut(s) 469, 667, 676
BstKTI GATC 4 cut(s) 29, 131, 314, 705
BstMAI GTCTC 3 cut(s) 388, 595, 663
BstMBI GATC 4 cut(s) 26, 128, 311, 702
BstMCI CGRYCG 1 cut(s) 420
BstMWI GCNNNNNNNGC 6 cut(s) 50, 429, 464, 501, 671, 673
BstNI CCWGG 1 cut(s) 537
BstPI GGTNACC 1 cut(s) 686
BstSCI CCNGG 4 cut(s) 307, 461, 535, 626
BstSLI GKGCMC 1 cut(s) 359
BstUI CGCG 4 cut(s) 483, 665, 667, 674
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 131
BsuRI GGCC 3 cut(s) 138, 458, 578
BsuTUI ATCGAT 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 79
BtrI CACGTC 2 cut(s) 487, 624
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 359
BveI ACCTGC 2 cut(s) 252, 535
Cac8I GCNNGC 3 cut(s) 319, 329, 506
CfoI GCGC 3 cut(s) 469, 667, 676
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 5 cut(s) 337, 438, 456, 511, 577
ClaI ATCGAT 1 cut(s) 131
CseI GACGC 1 cut(s) 680
Csp6I GTAC 2 cut(s) 162, 414
CviQI GTAC 2 cut(s) 162, 414
DdeI CTNAG 2 cut(s) 235, 698
DpnI GATC 4 cut(s) 28, 130, 313, 704
DpnII GATC 4 cut(s) 26, 128, 311, 702
DraI TTTAAA 1 cut(s) 109
Eam1104I CTCTTC 3 cut(s) 4, 502, 573
EarI CTCTTC 3 cut(s) 4, 502, 573
EciI GGCGGA 2 cut(s) 294, 511
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 388
Eco47I GGWCC 3 cut(s) 337, 438, 511
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 572
Eco91I GGTNACC 1 cut(s) 686
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 577
EcoO65I GGTNACC 1 cut(s) 686
EcoRII CCWGG 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 389
Esp3I CGTCTC 2 cut(s) 595, 663
FaiI YATR 3 cut(s) 47, 265, 410
FaqI GGGAC 1 cut(s) 610
FauI CCCGC 5 cut(s) 326, 367, 513, 589, 699
Fnu4HI GCNGC 4 cut(s) 59, 69, 270, 459
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 4 cut(s) 59, 69, 270, 459
FspBI CTAG 1 cut(s) 102
GlaI GCGC 3 cut(s) 468, 666, 675
GluI GCNGC 4 cut(s) 59, 69, 270, 459
HaeIII GGCC 3 cut(s) 138, 458, 578
HapII CCGG 8 cut(s) 165, 309, 420, 444, 462, 472, 509, 628
HgaI GACGC 1 cut(s) 680
HhaI GCGC 3 cut(s) 469, 667, 676
Hin1I GRCGYC 1 cut(s) 588
Hin6I GCGC 3 cut(s) 467, 665, 674
HinP1I GCGC 3 cut(s) 467, 665, 674
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 4 cut(s) 175, 368, 596, 648
HpaII CCGG 8 cut(s) 165, 309, 420, 444, 462, 472, 509, 628
HphI GGTGA 1 cut(s) 378
Hpy166II GTNNAC 2 cut(s) 386, 615
Hpy188I TCNGA 5 cut(s) 94, 174, 367, 595, 635
Hpy188III TCNNGA 2 cut(s) 444, 572
Hpy8I GTNNAC 2 cut(s) 386, 615
Hpy99I CGWCG 4 cut(s) 44, 488, 590, 685
HpyAV CCTTC 1 cut(s) 17
HpyCH4III ACNGT 2 cut(s) 151, 262
HpyCH4IV ACGT 5 cut(s) 39, 486, 588, 605, 623
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 429, 464, 501, 671, 673
HpyF3I CTNAG 2 cut(s) 235, 698
HpySE526I ACGT 5 cut(s) 39, 486, 588, 605, 623
Hsp92I GRCGYC 1 cut(s) 588
HspAI GCGC 3 cut(s) 467, 665, 674
Kpn2I TCCGGA 1 cut(s) 443
Kzo9I GATC 4 cut(s) 26, 128, 311, 702
LguI GCTCTTC 2 cut(s) 4, 502
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 1 cut(s) 391
MaeI CTAG 1 cut(s) 102
MaeII ACGT 5 cut(s) 39, 486, 588, 605, 623
MaeIII GTNAC 2 cut(s) 83, 686
MalI GATC 4 cut(s) 28, 130, 313, 704
MboI GATC 4 cut(s) 26, 128, 311, 702
MboII GAAGA 4 cut(s) 21, 293, 489, 560
MhlI GDGCHC 3 cut(s) 231, 359, 497
MluCI AATT 2 cut(s) 110, 636
MlyI GAGTC 1 cut(s) 590
MmeI TCCRAC 2 cut(s) 117, 618
MnlI CCTC 7 cut(s) 109, 340, 373, 451, 529, 568, 705
MroI TCCGGA 1 cut(s) 443
MseI TTAA 4 cut(s) 108, 257, 551, 641
MspI CCGG 8 cut(s) 165, 309, 420, 444, 462, 472, 509, 628
MspR9I CCNGG 4 cut(s) 309, 463, 537, 628
MvaI CCWGG 1 cut(s) 537
MvnI CGCG 4 cut(s) 483, 665, 667, 674
MwoI GCNNNNNNNGC 6 cut(s) 50, 429, 464, 501, 671, 673
NciI CCSGG 3 cut(s) 309, 463, 628
NdeII GATC 4 cut(s) 26, 128, 311, 702
NlaIV GGNNCC 3 cut(s) 338, 513, 579
NmeAIII GCCGAG 1 cut(s) 550
PaqCI CACCTGC 2 cut(s) 252, 535
PciSI GCTCTTC 2 cut(s) 4, 502
PcsI WCGNNNNNNNCGW 2 cut(s) 379, 664
PfeI GAWTC 3 cut(s) 175, 368, 648
PflFI GACNNNGTC 1 cut(s) 297
PkrI GCNGC 4 cut(s) 60, 70, 271, 460
PleI GAGTC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 590
Psp124BI GAGCTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 605
Psp6I CCWGG 1 cut(s) 535
PspEI GGTNACC 1 cut(s) 686
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 3 cut(s) 338, 513, 579
PspPI GGNCC 5 cut(s) 337, 438, 456, 511, 577
PsyI GACNNNGTC 1 cut(s) 297
RsaI GTAC 2 cut(s) 163, 415
RsaNI GTAC 2 cut(s) 162, 414
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 2 cut(s) 4, 502
SaqAI TTAA 4 cut(s) 108, 257, 551, 641
SatI GCNGC 4 cut(s) 59, 69, 270, 459
Sau3AI GATC 4 cut(s) 26, 128, 311, 702
Sau96I GGNCC 5 cut(s) 337, 438, 456, 511, 577
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 4 cut(s) 309, 463, 537, 628
SduI GDGCHC 3 cut(s) 231, 359, 497
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 3 cut(s) 337, 438, 511
Sse9I AATT 2 cut(s) 110, 636
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 4 cut(s) 307, 461, 535, 626
StyI CCWWGG 1 cut(s) 389
TaaI ACNGT 2 cut(s) 151, 262
TaiI ACGT 5 cut(s) 42, 489, 591, 608, 626
TaqI TCGA 4 cut(s) 21, 131, 680, 705
TaqII GACCGA 1 cut(s) 426
TasI AATT 2 cut(s) 110, 636
TauI GCSGC 3 cut(s) 71, 272, 461
TfiI GAWTC 3 cut(s) 175, 368, 648
Tru1I TTAA 4 cut(s) 108, 257, 551, 641
Tru9I TTAA 4 cut(s) 108, 257, 551, 641
TscAI CASTG 1 cut(s) 359
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 1 cut(s) 359
Tth111I GACNNNGTC 1 cut(s) 297
VpaK11BI GGWCC 3 cut(s) 337, 438, 511
XapI RAATTY 2 cut(s) 110, 636
XspI CTAG 1 cut(s) 102
ZraI GACGTC 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.