AT2G17043

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000199
Physical Location & Seq
Forward (+)
7409063 .. 7409582
520 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17043.1

Sequence Viewer

Length: 243 bp
ATGGTGTTTTGGAGATCCAACCTATTCTATGAAAGAAAGCGCGGAGATCTACTGGGAGAGGTCAAAAAATACTTAGCCTCAAGAAATTTCACCAAGAAGACAGTCATCGTCAAAGTACAAGAGTCTTTGACGGTTGCGCAAGCCAAAGATAACAACAATGAAAATTTGGCTGTCTTTGGACAAGCAGAAGCTATTACAGTTGCTCTGCATGATTCTCTACTTAGCTACATGTCTGTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

80

Amino Acids

9.08

Weight (kDa)

9.4

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 138
AccII CGCG 1 cut(s) 42
AciI CCGC 1 cut(s) 42
AclWI GGATC 1 cut(s) 9
AcsI RAATTY 2 cut(s) 85, 163
AfaI GTAC 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 228
AluBI AGCT 2 cut(s) 191, 225
AluI AGCT 2 cut(s) 191, 225
AlwI GGATC 1 cut(s) 9
ApoI RAATTY 2 cut(s) 85, 163
AspLEI GCGC 2 cut(s) 42, 139
AsuHPI GGTGA 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 104
BglII AGATCT 1 cut(s) 46
BmrI ACTGGG 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 42
Bsp143I GATC 2 cut(s) 14, 46
BspACI CCGC 1 cut(s) 42
BspFNI CGCG 1 cut(s) 42
BspPI GGATC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 57
BssMI GATC 2 cut(s) 14, 46
Bst4CI ACNGT 3 cut(s) 103, 133, 199
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 73, 221
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 2 cut(s) 42, 139
BstKTI GATC 2 cut(s) 17, 49
BstMBI GATC 2 cut(s) 14, 46
BstNSI RCATGY 1 cut(s) 232
BstUI CGCG 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 2 cut(s) 14, 46
BstYI RGATCY 2 cut(s) 14, 46
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 2 cut(s) 42, 139
Csp6I GTAC 1 cut(s) 116
CviAII CATG 2 cut(s) 209, 229
CviJI RGCY 5 cut(s) 77, 143, 170, 191, 225
CviKI_1 RGCY 5 cut(s) 77, 143, 170, 191, 225
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 2 cut(s) 73, 221
DpnI GATC 2 cut(s) 16, 48
DpnII GATC 2 cut(s) 14, 46
FaeI CATG 2 cut(s) 212, 232
FaiI YATR 4 cut(s) 30, 210, 230, 241
FatI CATG 2 cut(s) 208, 228
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 2 cut(s) 41, 138
HhaI GCGC 2 cut(s) 42, 139
Hin1II CATG 2 cut(s) 212, 232
Hin6I GCGC 2 cut(s) 40, 137
HinP1I GCGC 2 cut(s) 40, 137
HinfI GANTC 2 cut(s) 122, 212
HphI GGTGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 81
HpyCH4III ACNGT 3 cut(s) 103, 133, 199
HpyCH4V TGCA 1 cut(s) 208
HpyF3I CTNAG 2 cut(s) 73, 221
Hsp92II CATG 2 cut(s) 212, 232
HspAI GCGC 2 cut(s) 40, 137
Kzo9I GATC 2 cut(s) 14, 46
LpnPI CCDG 1 cut(s) 38
MalI GATC 2 cut(s) 16, 48
MboI GATC 2 cut(s) 14, 46
MboII GAAGA 1 cut(s) 109
MflI RGATCY 2 cut(s) 14, 46
MluCI AATT 2 cut(s) 85, 163
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 2 cut(s) 52, 88
MvnI CGCG 1 cut(s) 42
NdeII GATC 2 cut(s) 14, 46
NlaIII CATG 2 cut(s) 212, 232
NsbI TGCGCA 1 cut(s) 138
NspI RCATGY 1 cut(s) 232
PciI ACATGT 1 cut(s) 228
PfeI GAWTC 1 cut(s) 212
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PscI ACATGT 1 cut(s) 228
PsuI RGATCY 2 cut(s) 14, 46
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
Sau3AI GATC 2 cut(s) 14, 46
SchI GAGTC 1 cut(s) 131
SetI ASST 4 cut(s) 24, 63, 193, 227
SgeI CNNG 8 cut(s) 53, 65, 93, 106, 131, 152, 194, 221
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 2 cut(s) 85, 163
SsiI CCGC 1 cut(s) 42
TaaI ACNGT 3 cut(s) 103, 133, 199
TasI AATT 2 cut(s) 85, 163
TatI WGTACW 1 cut(s) 115
TfiI GAWTC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 45, 174
XapI RAATTY 2 cut(s) 85, 163
XceI RCATGY 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.