Rw6G020910

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000199
Physical Location & Seq
Forward (+)
41626874 .. 41627707
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G020910.1

Sequence Viewer

Length: 834 bp
ATGGCTTACCACACTCGCTCTAACAGCTTCCCCTCAATGCCACACCCTCTTTTTCAAGAAGTTGATGAACATTTGTGCAGATTGAGGTCTTCCGAAGCCACTTCCACATCTTCATCCTCAATAAGAAAAAAACTAAATGGCCTGCAAGACATGCTTGACTGTGTTGATATGTTGCTTCAGTTGCAAGGCACCCAACAAGTATTAGCACAAGAGCAGCAACAAAAATGGGCTAATGAGCTATTAGACGGCTCTCTCTGGCTCTTGGATATTTGCAGCACCGCAAAGGATGCCATCTCGCAAACGAAGGAGTCCATACAAGACCTTCAATTAATCATTAGAAGAAAACGGGGAGGTGAAACTGGACTCACAAGTGAGGTCAGGAAATACTTGAGCTCTCGGAAGATGGTGAAGAAGTCAATCCACAAGGCTATGGGAAACCTGAAGGGAATGGAAAACAAATCTAATTTCTCATCCGCCAGCAAGGACCAAGAGACTATTGCCATTGTTAGCAAGCTAAGAGATGTTGAAGCAATTACTCTCAGAGTCTTTGAATCAGTGCTGTCCTTCATCTCTGGGCCAAAGTCAAAGCCTAGCAGCTGGTCTTTCGTTTCCAAAATTGTGCAGTCTAAGAGGATAGCTTGTGATGAAGAAGCGAATGTAAATGAATTTGCAGAGGTTGATGCTGCATTGAAGTCATTAAAGAGTGCAGAAAATGCACAGAACCAGCTTAACGATCTGGAATCATGCATTCAAGATCAAGAAGAAGGACTCGAGTGCTTGTTTAGGCAATTGATCAAAACCAGAGTCTCCCTTCTTAACATCCTGAGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

277

Amino Acids

31.1

Weight (kDa)

7.61

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 274 4e-86 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 2 cut(s) 279, 474
AcsI RAATTY 1 cut(s) 665
AcuI CTGAAG 2 cut(s) 161, 461
AgsI TTSAA 6 cut(s) 56, 326, 527, 551, 691, 752
AluBI AGCT 7 cut(s) 27, 238, 393, 514, 597, 638, 727
AluI AGCT 7 cut(s) 27, 238, 393, 514, 597, 638, 727
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 2 cut(s) 485, 811
Ama87I CYCGRG 1 cut(s) 770
AoxI GGCC 2 cut(s) 139, 575
ApeKI GCWGC 4 cut(s) 214, 273, 594, 683
ApoI RAATTY 1 cut(s) 665
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
AseI ATTAAT 1 cut(s) 329
AspS9I GGNCC 2 cut(s) 484, 575
AsuHPI GGTGA 2 cut(s) 365, 418
AvaI CYCGRG 1 cut(s) 770
AvaII GGWCC 1 cut(s) 484
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 4 cut(s) 226, 285, 606, 670
BccI CCATC 2 cut(s) 299, 397
BceAI ACGGC 1 cut(s) 262
BclI TGATCA 1 cut(s) 792
BcoDI GTCTC 2 cut(s) 485, 811
BfaI CTAG 2 cut(s) 591, 832
BisI GCNGC 4 cut(s) 215, 274, 595, 684
BlsI GCNGC 4 cut(s) 216, 275, 596, 685
Bme18I GGWCC 1 cut(s) 484
BmeT110I CYCGRG 1 cut(s) 770
BmgT120I GGNCC 2 cut(s) 484, 575
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 2 cut(s) 277, 670
BpiI GAAGAC 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 824
BpuEI CTTGAG 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 364
BseGI GGATG 4 cut(s) 113, 292, 470, 819
BseMII CTCAG 2 cut(s) 553, 815
BseNI ACTGG 1 cut(s) 364
BseXI GCAGC 4 cut(s) 226, 285, 606, 670
BsgI GTGCAG 3 cut(s) 97, 641, 726
BshFI GGCC 2 cut(s) 141, 577
BshNI GGYRCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 395
BsiHKCI CYCGRG 1 cut(s) 770
BsmAI GTCTC 2 cut(s) 485, 811
BsmI GAATGC 1 cut(s) 747
BsnI GGCC 2 cut(s) 141, 577
BsoBI CYCGRG 1 cut(s) 770
Bsp1286I GDGCHC 1 cut(s) 395
Bsp143I GATC 3 cut(s) 733, 754, 792
BspACI CCGC 2 cut(s) 279, 474
BspANI GGCC 2 cut(s) 141, 577
BspCNI CTCAG 2 cut(s) 552, 816
BspLI GGNNCC 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 364
BssMI GATC 3 cut(s) 733, 754, 792
Bst4CI ACNGT 1 cut(s) 161
BstAPI GCANNNNNTGC 3 cut(s) 151, 287, 713
BstC8I GCNNGC 3 cut(s) 143, 478, 512
BstDEI CTNAG 4 cut(s) 515, 539, 627, 824
BstF5I GGATG 4 cut(s) 113, 292, 470, 819
BstKTI GATC 3 cut(s) 736, 757, 795
BstMAI GTCTC 2 cut(s) 485, 811
BstMBI GATC 3 cut(s) 733, 754, 792
BstMWI GCNNNNNNNGC 5 cut(s) 24, 151, 181, 287, 713
BstNSI RCATGY 1 cut(s) 154
BstV1I GCAGC 4 cut(s) 226, 285, 606, 670
BstV2I GAAGAC 1 cut(s) 81
BsuRI GGCC 2 cut(s) 141, 577
BtsCI GGATG 4 cut(s) 113, 292, 470, 819
BtsIMutI CAGTG 1 cut(s) 561
Cac8I GCNNGC 3 cut(s) 143, 478, 512
Cfr13I GGNCC 2 cut(s) 484, 575
CviAII CATG 2 cut(s) 151, 744
DdeI CTNAG 4 cut(s) 515, 539, 627, 824
DpnI GATC 3 cut(s) 735, 756, 794
DpnII GATC 3 cut(s) 733, 754, 792
EciI GGCGGA 1 cut(s) 463
Ecl136II GAGCTC 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 393
Eco57I CTGAAG 2 cut(s) 161, 461
Eco88I CYCGRG 1 cut(s) 770
EcoICRI GAGCTC 1 cut(s) 393
EcoT22I ATGCAT 1 cut(s) 749
EcoT38I GRGCYC 1 cut(s) 395
FaeI CATG 2 cut(s) 154, 747
FaiI YATR 5 cut(s) 152, 170, 314, 431, 745
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 2 cut(s) 150, 743
FbaI TGATCA 1 cut(s) 792
Fnu4HI GCNGC 4 cut(s) 215, 274, 595, 684
FokI GGATG 4 cut(s) 100, 299, 457, 806
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 4 cut(s) 215, 274, 595, 684
FspBI CTAG 2 cut(s) 591, 832
GluI GCNGC 4 cut(s) 215, 274, 595, 684
HaeIII GGCC 2 cut(s) 141, 577
Hin1II CATG 2 cut(s) 154, 747
HinfI GANTC 7 cut(s) 308, 363, 543, 551, 740, 768, 804
HphI GGTGA 2 cut(s) 365, 418
Hpy188I TCNGA 3 cut(s) 94, 399, 542
Hpy188III TCNNGA 6 cut(s) 56, 379, 737, 752, 758, 823
HpyAV CCTTC 6 cut(s) 298, 332, 436, 574, 758, 821
HpyCH4III ACNGT 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 151, 181, 287, 713
HpyF3I CTNAG 4 cut(s) 515, 539, 627, 824
Hsp92II CATG 2 cut(s) 154, 747
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 3 cut(s) 733, 754, 792
Lsp1109I GCAGC 4 cut(s) 226, 285, 606, 670
LweI GCATC 2 cut(s) 277, 670
MaeI CTAG 2 cut(s) 591, 832
MalI GATC 3 cut(s) 735, 756, 794
MboI GATC 3 cut(s) 733, 754, 792
MboII GAAGA 7 cut(s) 81, 102, 351, 412, 421, 659, 773
MfeI CAATTG 1 cut(s) 788
MhlI GDGCHC 1 cut(s) 395
MluCI AATT 6 cut(s) 326, 463, 531, 615, 665, 788
MlyI GAGTC 5 cut(s) 317, 357, 552, 762, 813
MnlI CCTC 8 cut(s) 43, 57, 78, 127, 344, 367, 624, 667
Mph1103I ATGCAT 1 cut(s) 749
MseI TTAA 4 cut(s) 329, 698, 729, 816
MspA1I CMGCKG 1 cut(s) 597
MunI CAATTG 1 cut(s) 788
Mva1269I GAATGC 1 cut(s) 747
MwoI GCNNNNNNNGC 5 cut(s) 24, 151, 181, 287, 713
NdeII GATC 3 cut(s) 733, 754, 792
NlaIII CATG 2 cut(s) 154, 747
NlaIV GGNNCC 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 749
NspI RCATGY 1 cut(s) 154
PaeR7I CTCGAG 1 cut(s) 770
PctI GAATGC 1 cut(s) 747
PfeI GAWTC 2 cut(s) 551, 740
PkrI GCNGC 4 cut(s) 216, 275, 596, 685
PleI GAGTC 5 cut(s) 316, 357, 551, 762, 812
PpsI GAGTC 5 cut(s) 316, 357, 551, 762, 812
PshBI ATTAAT 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 484, 575
PspXI VCTCGAGB 1 cut(s) 770
PvuII CAGCTG 1 cut(s) 597
SacI GAGCTC 1 cut(s) 395
SaqAI TTAA 4 cut(s) 329, 698, 729, 816
SatI GCNGC 4 cut(s) 215, 274, 595, 684
Sau3AI GATC 3 cut(s) 733, 754, 792
Sau96I GGNCC 2 cut(s) 484, 575
SchI GAGTC 5 cut(s) 317, 357, 552, 762, 813
SduI GDGCHC 1 cut(s) 395
SfaNI GCATC 2 cut(s) 277, 670
Sfr274I CTCGAG 1 cut(s) 770
SinI GGWCC 1 cut(s) 484
SlaI CTCGAG 1 cut(s) 770
SmlI CTYRAG 2 cut(s) 388, 770
SmoI CTYRAG 2 cut(s) 388, 770
Sse9I AATT 6 cut(s) 326, 463, 531, 615, 665, 788
SsiI CCGC 2 cut(s) 279, 474
SspMI CTAG 2 cut(s) 591, 832
SstI GAGCTC 1 cut(s) 395
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 771
TasI AATT 6 cut(s) 326, 463, 531, 615, 665, 788
TfiI GAWTC 2 cut(s) 551, 740
Tru1I TTAA 4 cut(s) 329, 698, 729, 816
Tru9I TTAA 4 cut(s) 329, 698, 729, 816
TscAI CASTG 1 cut(s) 561
TseI GCWGC 4 cut(s) 214, 273, 594, 683
TspDTI ATGAA 5 cut(s) 81, 102, 556, 660, 678
TspRI CASTG 1 cut(s) 561
VpaK11BI GGWCC 1 cut(s) 484
VspI ATTAAT 1 cut(s) 329
XapI RAATTY 1 cut(s) 665
XceI RCATGY 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 770
XspI CTAG 2 cut(s) 591, 832
Zsp2I ATGCAT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.