Rh6CG244400

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000199
Physical Location & Seq
Reverse (-)
41149777 .. 41150646
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG244400.1

Sequence Viewer

Length: 870 bp
ATGGCAGCCTCTCCTTTAAACCTAAGATCACATAACCATACTCGGTCAAACAGCTTGCCATCAACATCACACCCCTTTGTTACTGAATTTGACGAGCATCTGTGCAGATTAAAAGCTTTAGAATCATCATCATCCATAAGCCACAAACTAAGTGGCCTTCAAGATATACATGACTGCGCGGAAAAGTTTCTTCTTTTGCCGCTGAACCAACAAGCCTTGAAACAAGAGTGCGGAGACACATGGATCAATCAACTTGATGGATCTTCAAGGCTCCTGGATGTGTGTGGCATCATAAAGGATGCTTTGCTGCAAACAAAGGAATGCACACATGAACTTCGATCGATTAGGAGCAGAAGACGGGGAGTTGACACGAGCTTTATGAGTGAGGTTTCAAAATACCTTACCTGTAGGAAGGATGTCAAGAAGGCAATCAACAAAGCCTCAAAGCTCAGAGACAGTAAGAGCACAGACAAAACTCATGAGACTCCAGCCATTGTCAAGATGTTGAAAGAGTTAGATGCAGTCACCTCTGCTGTTTTTGAATCCTTGTTTTCCTTTATAGCTAGTTCAAATTTGAAATCAAAGTCAAGCACTTGGTCCTTAGTTTCAAAGCAGGTGCAGCCCAGAAAAGTAGCATGTGAATGTGAAGAAGTCAGAAAAACGAATGAGCTTGAGAAGGTGGATGCTGCATTGCACTTGCTCATGAGTCACAAGACTAAAGCATCTGATAACACAATGCAAGTTGATTGTGTGCAAAAAAATTTAAAGGAATTCGAGATCAACATTCAAGATATTGAAGAACGACTTGAGTGCCTCTTTAGGCGCTTAATCAAAGCCAGAGTTTCCCTTCTCAACATATTCAACGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

289

Amino Acids

32.75

Weight (kDa)

8.74

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 49 - 286 6.3e-69 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 604
Acc36I ACCTGC 1 cut(s) 604
AccII CGCG 1 cut(s) 179
AciI CCGC 3 cut(s) 179, 200, 231
AclWI GGATC 2 cut(s) 251, 268
AcsI RAATTY 4 cut(s) 86, 571, 760, 770
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 6 cut(s) 54, 116, 375, 448, 563, 670
AluI AGCT 6 cut(s) 54, 116, 375, 448, 563, 670
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 3 cut(s) 228, 447, 476
AlwI GGATC 2 cut(s) 251, 268
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 4 cut(s) 5, 307, 619, 686
ApoI RAATTY 4 cut(s) 86, 571, 760, 770
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 2 cut(s) 179, 825
AspS9I GGNCC 1 cut(s) 597
AsuHPI GGTGA 1 cut(s) 517
AvaII GGWCC 1 cut(s) 597
BauI CACGAG 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 4 cut(s) 17, 294, 631, 673
BccI CCATC 2 cut(s) 67, 251
BcgI CGANNNNNNTGC 2 cut(s) 792, 826
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 3 cut(s) 228, 447, 476
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 406
BfoI RGCGCY 1 cut(s) 826
BfuAI ACCTGC 1 cut(s) 604
BisI GCNGC 5 cut(s) 6, 200, 308, 620, 687
BlsI GCNGC 5 cut(s) 7, 201, 309, 621, 688
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 597
BmgT120I GGNCC 1 cut(s) 597
BmiI GGNNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 6 cut(s) 106, 289, 297, 508, 673, 731
BpiI GAAGAC 1 cut(s) 361
BpmI CTGGAG 1 cut(s) 471
BpuEI CTTGAG 2 cut(s) 692, 827
Bsa29I ATCGAT 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 689
BseBI CCWGG 1 cut(s) 275
BseCI ATCGAT 1 cut(s) 341
BseGI GGATG 5 cut(s) 131, 283, 304, 421, 688
BseMI GCAATG 1 cut(s) 689
BseMII CTCAG 1 cut(s) 463
BseXI GCAGC 4 cut(s) 17, 294, 631, 673
BsgI GTGCAG 2 cut(s) 124, 638
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 341
BshFI GGCC 1 cut(s) 156
BshVI ATCGAT 1 cut(s) 341
BsiEI CGRYCG 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 467
BsmAI GTCTC 3 cut(s) 228, 447, 476
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 5 cut(s) 26, 243, 260, 338, 777
BspACI CCGC 3 cut(s) 179, 200, 231
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 462
BspDI ATCGAT 1 cut(s) 341
BspFNI CGCG 1 cut(s) 179
BspHI TCATGA 2 cut(s) 478, 702
BspLI GGNNCC 1 cut(s) 272
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 2 cut(s) 251, 268
BsrDI GCAATG 1 cut(s) 689
BssMI GATC 5 cut(s) 26, 243, 260, 338, 777
BssSI CACGAG 1 cut(s) 370
Bst2BI CACGAG 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 4 cut(s) 23, 149, 449, 601
BstF5I GGATG 5 cut(s) 131, 283, 304, 421, 688
BstFNI CGCG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 826
BstHHI GCGC 2 cut(s) 179, 825
BstKTI GATC 5 cut(s) 29, 246, 263, 341, 780
BstMAI GTCTC 3 cut(s) 228, 447, 476
BstMBI GATC 5 cut(s) 26, 243, 260, 338, 777
BstMCI CGRYCG 1 cut(s) 341
BstMWI GCNNNNNNNGC 1 cut(s) 619
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 1 cut(s) 639
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 406
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 4 cut(s) 17, 294, 631, 673
BstV2I GAAGAC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 341
BsuRI GGCC 1 cut(s) 156
BsuTUI ATCGAT 1 cut(s) 341
BtsCI GGATG 5 cut(s) 131, 283, 304, 421, 688
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 1 cut(s) 56
CciI TCATGA 2 cut(s) 478, 702
CfoI GCGC 2 cut(s) 179, 825
Cfr13I GGNCC 1 cut(s) 597
ClaI ATCGAT 1 cut(s) 341
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 6 cut(s) 170, 240, 329, 479, 636, 703
DdeI CTNAG 4 cut(s) 23, 149, 449, 601
DpnI GATC 5 cut(s) 28, 245, 262, 340, 779
DpnII GATC 5 cut(s) 26, 243, 260, 338, 777
DraI TTTAAA 2 cut(s) 18, 765
Eco47I GGWCC 1 cut(s) 597
EcoRI GAATTC 1 cut(s) 770
EcoRII CCWGG 1 cut(s) 273
FaeI CATG 6 cut(s) 173, 243, 332, 482, 639, 706
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FatI CATG 6 cut(s) 169, 239, 328, 478, 635, 702
Fnu4HI GCNGC 5 cut(s) 6, 200, 308, 620, 687
FokI GGATG 5 cut(s) 118, 290, 311, 428, 695
Fsp4HI GCNGC 5 cut(s) 6, 200, 308, 620, 687
FspBI CTAG 1 cut(s) 564
GlaI GCGC 2 cut(s) 178, 824
GluI GCNGC 5 cut(s) 6, 200, 308, 620, 687
GsuI CTGGAG 1 cut(s) 471
HaeII RGCGCY 1 cut(s) 826
HaeIII GGCC 1 cut(s) 156
HhaI GCGC 2 cut(s) 179, 825
Hin1II CATG 6 cut(s) 173, 243, 332, 482, 639, 706
Hin6I GCGC 2 cut(s) 177, 823
HinP1I GCGC 2 cut(s) 177, 823
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 4 cut(s) 122, 484, 542, 706
HphI GGTGA 1 cut(s) 517
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 3 cut(s) 452, 656, 727
Hpy188III TCNNGA 7 cut(s) 161, 421, 479, 499, 703, 775, 788
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 5 cut(s) 167, 406, 418, 670, 857
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4V TGCA 9 cut(s) 105, 310, 324, 521, 619, 689, 694, 739, 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 619
HpyF3I CTNAG 4 cut(s) 23, 149, 449, 601
Hsp92II CATG 6 cut(s) 173, 243, 332, 482, 639, 706
HspAI GCGC 2 cut(s) 177, 823
Kzo9I GATC 5 cut(s) 26, 243, 260, 338, 777
LmnI GCTCC 2 cut(s) 276, 348
LpnPI CCDG 7 cut(s) 260, 287, 418, 501, 599, 637, 850
Lsp1109I GCAGC 4 cut(s) 17, 294, 631, 673
LweI GCATC 6 cut(s) 106, 289, 297, 508, 673, 731
MaeI CTAG 1 cut(s) 564
MaeIII GTNAC 3 cut(s) 79, 523, 707
MalI GATC 5 cut(s) 28, 245, 262, 340, 779
MboI GATC 5 cut(s) 26, 243, 260, 338, 777
MboII GAAGA 5 cut(s) 182, 255, 366, 659, 809
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 4 cut(s) 86, 571, 760, 770
MlyI GAGTC 2 cut(s) 478, 715
MnlI CCTC 5 cut(s) 19, 379, 451, 538, 824
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 4 cut(s) 17, 110, 764, 827
MslI CAYNNNNRTG 1 cut(s) 640
MspA1I CMGCKG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 619
NdeII GATC 5 cut(s) 26, 243, 260, 338, 777
NlaIII CATG 6 cut(s) 173, 243, 332, 482, 639, 706
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 523, 707
NspI RCATGY 1 cut(s) 639
PagI TCATGA 2 cut(s) 478, 702
PaqCI CACCTGC 1 cut(s) 604
PctI GAATGC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 122, 542
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 5 cut(s) 7, 201, 309, 621, 688
Ple19I CGATCG 1 cut(s) 341
PleI GAGTC 2 cut(s) 478, 714
PpsI GAGTC 2 cut(s) 478, 714
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 597
PsuI RGATCY 1 cut(s) 260
PvuI CGATCG 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 640
SaqAI TTAA 4 cut(s) 17, 110, 764, 827
SatI GCNGC 5 cut(s) 6, 200, 308, 620, 687
Sau3AI GATC 5 cut(s) 26, 243, 260, 338, 777
Sau96I GGNCC 1 cut(s) 597
SchI GAGTC 2 cut(s) 478, 715
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 1 cut(s) 467
SfaNI GCATC 6 cut(s) 106, 289, 297, 508, 673, 731
SfcI CTRYAG 1 cut(s) 406
SinI GGWCC 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 640
SmlI CTYRAG 2 cut(s) 671, 806
SmoI CTYRAG 2 cut(s) 671, 806
Sse9I AATT 4 cut(s) 86, 571, 760, 770
SsiI CCGC 3 cut(s) 179, 200, 231
SspMI CTAG 1 cut(s) 564
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 458
TaqI TCGA 3 cut(s) 337, 341, 774
TaqII GACCGA 1 cut(s) 33
TasI AATT 4 cut(s) 86, 571, 760, 770
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 2 cut(s) 122, 542
Tru1I TTAA 4 cut(s) 17, 110, 764, 827
Tru9I TTAA 4 cut(s) 17, 110, 764, 827
TseFI GTSAC 2 cut(s) 523, 707
TseI GCWGC 4 cut(s) 5, 307, 619, 686
Tsp45I GTSAC 2 cut(s) 523, 707
TspDTI ATGAA 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 597
XapI RAATTY 4 cut(s) 86, 571, 760, 770
XceI RCATGY 1 cut(s) 639
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.