Rw4G032750

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000199
Physical Location & Seq
Forward (+)
59825410 .. 59826313
904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G032750.1

Sequence Viewer

Length: 777 bp
ATGGCTTCCCCCGCTCGCTCTAACAGCTTCCCCTCCAGGGCACACCCTATCATTGAAGAGGCTAATGAACAAATGTGCAGACTGAGGTCTTCTGCTGCCACCTCAACATCTTCATTATCAATAAGCCACCAAGTAAGTGGTCTACAAGACTTGCATGAATGTGTTGAAAGGTTGCTTCAGTTGGCCCTCAATCAACAAGCTTCAGCACAAGAGAAACATCAGAAATGCACTAATGTGCTATTAGATGGTTCTCTCAGGCTCCTGGATGATCTTCAATCTATCATAAGAAGACGAGGATGCGAATCTGGAGTACTTACAAGTGAGGTTAGGAAATACTTGACCTCCAGGAAGATGGTGAAAAAGACAATCCAAAAGGCAATGGTCAATACCAGATCCGCAATTCCCTCAACAAGGAGACTGAATCTATTTCCATTCTGGTCATTGGTATCCAAGATGATGCAGTCAAAAAGAGTAGCTTGTGAGGAAAAAGCAGAAATAAATGAATTCGCAGAGGTGGACGCTGCATTGAAGTCACTCAAGAGTGCAGACAATGTACAGAACCAGCTTAATAATCTGGAGTCAGGCATCCAAGATCAAGAAGAAGGATTTGAGTGCCTATTTAGGCAATTGATCAAAACCAGAGTCTCCCTTCACATGGAGCTATTTAATAAACCAAGATCAGTAATTGAAAAGCAAACACCAGCTAAGATGAAGATCACTTACAGGTATGTAGACCAAGCAAACTCCACCCAAATCCCCACCAACCTTTCAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

258

Amino Acids

29.13

Weight (kDa)

9.37

Isoelectric Point (pI)

62.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 46 - 89 8.5e-11 Protein BPS1
BPS1 PF03087 90 - 132 1.9e-07 Protein BPS1
BPS1 PF03087 145 - 217 1.4e-19 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 14
AccI GTMKAC 2 cut(s) 142, 732
AciI CCGC 2 cut(s) 12, 396
AclWI GGATC 1 cut(s) 387
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 2 cut(s) 161, 186
AfaI GTAC 2 cut(s) 312, 555
AfiI CCNNNNNNNGG 3 cut(s) 37, 411, 655
AgsI TTSAA 5 cut(s) 56, 167, 275, 529, 689
AjnI CCWGG 3 cut(s) 35, 261, 344
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 6 cut(s) 27, 200, 476, 565, 661, 704
AluI AGCT 6 cut(s) 27, 200, 476, 565, 661, 704
Alw26I GTCTC 2 cut(s) 409, 649
AlwI GGATC 1 cut(s) 387
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 95, 521
ApoI RAATTY 1 cut(s) 503
ArsI GACNNNNNNTTYG 2 cut(s) 627, 659
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 367
BaeGI GKGCMC 1 cut(s) 43
BarI GAAGNNNNNNTAC 2 cut(s) 704, 736
BbsI GAAGAC 2 cut(s) 81, 295
BbvI GCAGC 2 cut(s) 82, 508
BccI CCATC 2 cut(s) 239, 346
BciT130I CCWGG 3 cut(s) 37, 263, 346
BciVI GTATCC 1 cut(s) 457
BclI TGATCA 1 cut(s) 630
BcoDI GTCTC 2 cut(s) 409, 649
BfuI GTATCC 1 cut(s) 457
BisI GCNGC 2 cut(s) 96, 522
BlsI GCNGC 2 cut(s) 97, 523
BmcAI AGTACT 1 cut(s) 312
Bme1390I CCNGG 3 cut(s) 37, 263, 346
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 3 cut(s) 37, 263, 346
BmsI GCATC 3 cut(s) 287, 447, 594
BoxI GACNNNNGTC 1 cut(s) 85
BpiI GAAGAC 2 cut(s) 81, 295
BpmI CTGGAG 4 cut(s) 19, 327, 328, 596
BpuEI CTTGAG 1 cut(s) 521
BsaBI GATNNNNATC 2 cut(s) 301, 713
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 411, 655
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 2 cut(s) 301, 713
BseBI CCWGG 3 cut(s) 37, 263, 346
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 271, 302, 585
BseJI GATNNNNATC 2 cut(s) 301, 713
BseLI CCNNNNNNNGG 3 cut(s) 37, 411, 655
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 74, 268
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 2 cut(s) 82, 508
BsgI GTGCAG 2 cut(s) 97, 564
BshFI GGCC 1 cut(s) 185
BslI CCNNNNNNNGG 3 cut(s) 37, 411, 655
BsmAI GTCTC 2 cut(s) 409, 649
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 553
Bsp143I GATC 6 cut(s) 268, 392, 592, 630, 677, 714
BspACI CCGC 2 cut(s) 12, 396
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 2 cut(s) 75, 267
BspLI GGNNCC 1 cut(s) 260
BspPI GGATC 1 cut(s) 387
BsrBI CCGCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 384
BsrGI TGTACA 1 cut(s) 553
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 6 cut(s) 268, 392, 592, 630, 677, 714
Bst2UI CCWGG 3 cut(s) 37, 263, 346
Bst6I CTCTTC 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 553
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 3 cut(s) 83, 254, 705
BstENI CCTNNNNNAGG 1 cut(s) 409
BstF5I GGATG 3 cut(s) 271, 302, 585
BstKTI GATC 6 cut(s) 271, 395, 595, 633, 680, 717
BstMAI GTCTC 2 cut(s) 409, 649
BstMBI GATC 6 cut(s) 268, 392, 592, 630, 677, 714
BstMWI GCNNNNNNNGC 2 cut(s) 11, 24
BstNI CCWGG 3 cut(s) 37, 263, 346
BstPAI GACNNNNGTC 1 cut(s) 85
BstSCI CCNGG 3 cut(s) 35, 261, 344
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 82, 508
BstV2I GAAGAC 2 cut(s) 81, 295
BstX2I RGATCY 1 cut(s) 392
BstXI CCANNNNNNTGG 2 cut(s) 137, 352
BstYI RGATCY 1 cut(s) 392
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 3 cut(s) 271, 302, 585
Cac8I GCNNGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 184
CseI GACGC 1 cut(s) 527
Csp6I GTAC 2 cut(s) 311, 554
CviAII CATG 2 cut(s) 155, 655
CviQI GTAC 2 cut(s) 311, 554
DdeI CTNAG 3 cut(s) 83, 254, 705
DpnI GATC 6 cut(s) 270, 394, 594, 632, 679, 716
DpnII GATC 6 cut(s) 268, 392, 592, 630, 677, 714
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 161, 186
EcoNI CCTNNNNNAGG 1 cut(s) 409
EcoRI GAATTC 1 cut(s) 503
EcoRII CCWGG 3 cut(s) 35, 261, 344
FaeI CATG 2 cut(s) 158, 658
FaiI YATR 4 cut(s) 156, 284, 656, 729
FalI AAGNNNNNCTT 2 cut(s) 460, 492
FatI CATG 2 cut(s) 154, 654
FauI CCCGC 1 cut(s) 19
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 2 cut(s) 142, 732
Fnu4HI GCNGC 2 cut(s) 96, 522
FokI GGATG 3 cut(s) 278, 309, 572
Fsp4HI GCNGC 2 cut(s) 96, 522
GluI GCNGC 2 cut(s) 96, 522
GsuI CTGGAG 4 cut(s) 19, 327, 328, 596
HaeIII GGCC 1 cut(s) 185
HgaI GACGC 1 cut(s) 527
Hin1II CATG 2 cut(s) 158, 658
HindIII AAGCTT 1 cut(s) 198
HinfI GANTC 4 cut(s) 302, 421, 578, 642
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 3 cut(s) 143, 517, 733
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 4 cut(s) 306, 538, 575, 596
Hpy8I GTNNAC 3 cut(s) 143, 517, 733
HpyAV CCTTC 2 cut(s) 596, 659
HpyCH4V TGCA 6 cut(s) 78, 154, 228, 460, 524, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 24
HpyF3I CTNAG 3 cut(s) 83, 254, 705
Hsp92II CATG 2 cut(s) 158, 658
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 6 cut(s) 268, 392, 592, 630, 677, 714
LmnI GCTCC 2 cut(s) 264, 658
Lsp1109I GCAGC 2 cut(s) 82, 508
LweI GCATC 3 cut(s) 287, 447, 594
MaeIII GTNAC 1 cut(s) 531
MalI GATC 6 cut(s) 270, 394, 594, 632, 679, 716
MbiI CCGCTC 1 cut(s) 14
MboI GATC 6 cut(s) 268, 392, 592, 630, 677, 714
MboII GAAGA 8 cut(s) 68, 81, 102, 263, 300, 361, 611, 724
MfeI CAATTG 1 cut(s) 626
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 4 cut(s) 399, 503, 626, 684
MlyI GAGTC 2 cut(s) 587, 651
MseI TTAA 2 cut(s) 567, 666
MslI CAYNNNNRTG 2 cut(s) 159, 233
MspR9I CCNGG 3 cut(s) 37, 263, 346
MunI CAATTG 1 cut(s) 626
MvaI CCWGG 3 cut(s) 37, 263, 346
MwoI GCNNNNNNNGC 2 cut(s) 11, 24
NdeII GATC 6 cut(s) 268, 392, 592, 630, 677, 714
NlaIII CATG 2 cut(s) 158, 658
NlaIV GGNNCC 1 cut(s) 260
NmuCI GTSAC 1 cut(s) 531
OliI CACNNNNGTG 1 cut(s) 233
PfeI GAWTC 2 cut(s) 302, 421
PfoI TCCNGGA 2 cut(s) 261, 344
PkrI GCNGC 2 cut(s) 97, 523
PleI GAGTC 2 cut(s) 586, 650
PpsI GAGTC 2 cut(s) 586, 650
PshAI GACNNNNGTC 1 cut(s) 85
Psp6I CCWGG 3 cut(s) 35, 261, 344
PspGI CCWGG 3 cut(s) 35, 261, 344
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 1 cut(s) 184
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 2 cut(s) 312, 555
RsaNI GTAC 2 cut(s) 311, 554
RseI CAYNNNNRTG 2 cut(s) 159, 233
SaqAI TTAA 2 cut(s) 567, 666
SatI GCNGC 2 cut(s) 96, 522
Sau3AI GATC 6 cut(s) 268, 392, 592, 630, 677, 714
Sau96I GGNCC 1 cut(s) 184
ScaI AGTACT 1 cut(s) 312
SchI GAGTC 2 cut(s) 587, 651
ScrFI CCNGG 3 cut(s) 37, 263, 346
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 3 cut(s) 287, 447, 594
SmiMI CAYNNNNRTG 2 cut(s) 159, 233
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 4 cut(s) 399, 503, 626, 684
SsiI CCGC 2 cut(s) 12, 396
StyD4I CCNGG 3 cut(s) 35, 261, 344
TasI AATT 4 cut(s) 399, 503, 626, 684
TatI WGTACW 2 cut(s) 310, 553
TfiI GAWTC 2 cut(s) 302, 421
Tru1I TTAA 2 cut(s) 567, 666
Tru9I TTAA 2 cut(s) 567, 666
TseFI GTSAC 1 cut(s) 531
TseI GCWGC 2 cut(s) 95, 521
Tsp45I GTSAC 1 cut(s) 531
TspDTI ATGAA 5 cut(s) 81, 102, 171, 516, 725
XagI CCTNNNNNAGG 1 cut(s) 409
XapI RAATTY 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XmiI GTMKAC 2 cut(s) 142, 732
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.