RLG00000013104

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000199
Physical Location & Seq
Forward (+)
26238083 .. 26238951
869 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013104

Sequence Viewer

Length: 798 bp
ATGGCTGCGTCATATAATCATGCTCGCTTAAACAGCTTGCCTTCAACATCACACCCATTTGTTACAGAATTTGATAAGCATTTGTGCAGATTGAAGGCTTCAGAAACCACCTCTTCATCATCATCATCCATAAGTCAGAAACTCAATGGCCTCCAAGATTTGCAAGATTGCGTTGAGAAGTTTCTTCTCTTGCCACTCACTCAGCAAGCTTTGTTTCAAGAATGCAGTGACAAATGGATCATTGAGCTACTCGATGGATCTCTGAGGCTACTGGATGTAAGACGGGGAGATGACATGAGCTTCATGAGTGAGGTTAAAAAATACCTTACTGCTAGGAATGATGTGAAGCAGGCAATCAACAAGGCCTTCAAGGTTAAGGAAAGCAAGTGCACAAACAAAAACTACCAGACACCAGCTGTGGTTGGAATGTTGAAAGAGATGGATGCAGTCACCACTACCATGTTTGAATCACTTTTCTCCTTCATAGCTGGTTCAAATTTGAGATCAAAGTCAAACCCTTGGTCATTAGTTTCCAAGCTGGTGCAGTCCAATAGAGTCATTTGTGAGGCAATGGAAGTTGCGGAGATGAATGAACTTGAAAAGGTGGATGCTGCATTGCAATCCCTCATTAGTAGTCACAAGATAAGAAAATTTGATTGCACAAAGCAAGTCGAGTATGTACAAAACAGAATTCAGGAATTGGAGACGAGCATTCAAGATATTAAAGAAGGACATGAGTGCCTGTTCAGGCGCTTAATAAAAGCTAGAGTTTCCCTTCTCAACATATTCAACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

266

Amino Acids

30.15

Weight (kDa)

8.4

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 47 - 93 1.9e-14 Protein BPS1
BPS1 PF03087 94 - 262 2.5e-42 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 581
AclWI GGATC 2 cut(s) 245, 265
AcsI RAATTY 4 cut(s) 68, 496, 650, 690
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 1 cut(s) 681
AluBI AGCT 8 cut(s) 36, 209, 247, 300, 416, 488, 538, 764
AluI AGCT 8 cut(s) 36, 209, 247, 300, 416, 488, 538, 764
Alw21I GWGCWC 1 cut(s) 392
Alw26I GTCTC 1 cut(s) 698
Alw44I GTGCAC 1 cut(s) 388
AlwI GGATC 2 cut(s) 245, 265
AoxI GGCC 2 cut(s) 148, 363
ApaLI GTGCAC 1 cut(s) 388
ApeKI GCWGC 2 cut(s) 5, 611
ApoI RAATTY 4 cut(s) 68, 496, 650, 690
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
AspLEI GCGC 1 cut(s) 753
AsuHPI GGTGA 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 598
BccI CCATC 2 cut(s) 248, 433
BcoDI GTCTC 1 cut(s) 698
BfaI CTAG 2 cut(s) 333, 765
BfoI RGCGCY 1 cut(s) 754
BisI GCNGC 2 cut(s) 6, 612
BlsI GCNGC 2 cut(s) 7, 613
BmsI GCATC 2 cut(s) 433, 598
BsaJI CCNNGG 1 cut(s) 518
Bse1I ACTGG 1 cut(s) 276
Bse3DI GCAATG 2 cut(s) 576, 614
BseDI CCNNGG 1 cut(s) 518
BseGI GGATG 4 cut(s) 125, 280, 448, 613
BseMI GCAATG 2 cut(s) 576, 614
BseMII CTCAG 2 cut(s) 215, 254
BseNI ACTGG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 1 cut(s) 598
BsgI GTGCAG 2 cut(s) 106, 563
BshFI GGCC 2 cut(s) 150, 365
BsiHKAI GWGCWC 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 698
BsmBI CGTCTC 1 cut(s) 698
BsmI GAATGC 2 cut(s) 227, 711
BsnI GGCC 2 cut(s) 150, 365
Bsp1286I GDGCHC 1 cut(s) 392
Bsp1407I TGTACA 1 cut(s) 679
Bsp143I GATC 3 cut(s) 237, 257, 503
BspACI CCGC 1 cut(s) 581
BspANI GGCC 2 cut(s) 150, 365
BspCNI CTCAG 2 cut(s) 214, 255
BspHI TCATGA 1 cut(s) 303
BspPI GGATC 2 cut(s) 245, 265
BsrDI GCAATG 2 cut(s) 576, 614
BsrGI TGTACA 1 cut(s) 679
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 518
BssMI GATC 3 cut(s) 237, 257, 503
BssT1I CCWWGG 1 cut(s) 518
Bst6I CTCTTC 1 cut(s) 118
BstAUI TGTACA 1 cut(s) 679
BstC8I GCNNGC 4 cut(s) 25, 38, 207, 351
BstDEI CTNAG 2 cut(s) 201, 263
BstF5I GGATG 4 cut(s) 125, 280, 448, 613
BstH2I RGCGCY 1 cut(s) 754
BstHHI GCGC 1 cut(s) 753
BstKTI GATC 3 cut(s) 240, 260, 506
BstMAI GTCTC 1 cut(s) 698
BstMBI GATC 3 cut(s) 237, 257, 503
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 598
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BsuRI GGCC 2 cut(s) 150, 365
BtsCI GGATG 4 cut(s) 125, 280, 448, 613
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 4 cut(s) 25, 38, 207, 351
CciI TCATGA 1 cut(s) 303
CfoI GCGC 1 cut(s) 753
Csp6I GTAC 1 cut(s) 680
CviAII CATG 5 cut(s) 20, 295, 304, 460, 734
CviQI GTAC 1 cut(s) 680
DdeI CTNAG 2 cut(s) 201, 263
DpnI GATC 3 cut(s) 239, 259, 505
DpnII GATC 3 cut(s) 237, 257, 503
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 518
Eco147I AGGCCT 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 84
EcoRI GAATTC 1 cut(s) 690
EcoT14I CCWWGG 1 cut(s) 518
ErhI CCWWGG 1 cut(s) 518
Esp3I CGTCTC 1 cut(s) 698
FaeI CATG 5 cut(s) 23, 298, 307, 463, 737
FatI CATG 5 cut(s) 19, 294, 303, 459, 733
Fnu4HI GCNGC 2 cut(s) 6, 612
FokI GGATG 4 cut(s) 112, 287, 455, 620
Fsp4HI GCNGC 2 cut(s) 6, 612
FspBI CTAG 2 cut(s) 333, 765
GlaI GCGC 1 cut(s) 752
GluI GCNGC 2 cut(s) 6, 612
HaeII RGCGCY 1 cut(s) 754
HaeIII GGCC 2 cut(s) 150, 365
HhaI GCGC 1 cut(s) 753
Hin1II CATG 5 cut(s) 23, 298, 307, 463, 737
Hin6I GCGC 1 cut(s) 751
HinP1I GCGC 1 cut(s) 751
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 2 cut(s) 467, 555
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 3 cut(s) 103, 138, 264
Hpy188III TCNNGA 4 cut(s) 218, 304, 695, 716
Hpy8I GTNNAC 1 cut(s) 390
HpyAV CCTTC 6 cut(s) 51, 88, 376, 490, 722, 785
HpyCH4V TGCA 9 cut(s) 87, 163, 225, 390, 446, 544, 614, 619, 660
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 2 cut(s) 201, 263
Hsp92II CATG 5 cut(s) 23, 298, 307, 463, 737
HspAI GCGC 1 cut(s) 751
Kzo9I GATC 3 cut(s) 237, 257, 503
LpnPI CCDG 9 cut(s) 257, 335, 419, 426, 474, 524, 680, 733, 755
Lsp1109I GCAGC 1 cut(s) 598
LweI GCATC 2 cut(s) 433, 598
MaeI CTAG 2 cut(s) 333, 765
MaeIII GTNAC 4 cut(s) 61, 227, 448, 635
MalI GATC 3 cut(s) 239, 259, 505
MboI GATC 3 cut(s) 237, 257, 503
MboII GAAGA 2 cut(s) 105, 176
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 5 cut(s) 68, 496, 650, 690, 698
MlyI GAGTC 1 cut(s) 564
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 6 cut(s) 121, 161, 258, 304, 559, 635
MseI TTAA 5 cut(s) 29, 315, 375, 723, 755
MslI CAYNNNNRTG 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 416
Mva1269I GAATGC 2 cut(s) 227, 711
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 3 cut(s) 237, 257, 503
NlaIII CATG 5 cut(s) 23, 298, 307, 463, 737
NmuCI GTSAC 3 cut(s) 227, 448, 635
PagI TCATGA 1 cut(s) 303
PceI AGGCCT 1 cut(s) 365
PctI GAATGC 2 cut(s) 227, 711
PfeI GAWTC 1 cut(s) 467
PkrI GCNGC 2 cut(s) 7, 613
PleI GAGTC 1 cut(s) 563
PpsI GAGTC 1 cut(s) 563
PsuI RGATCY 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 1 cut(s) 681
RsaNI GTAC 1 cut(s) 680
RseI CAYNNNNRTG 1 cut(s) 458
SaqAI TTAA 5 cut(s) 29, 315, 375, 723, 755
SatI GCNGC 2 cut(s) 6, 612
Sau3AI GATC 3 cut(s) 237, 257, 503
SchI GAGTC 1 cut(s) 564
SduI GDGCHC 1 cut(s) 392
SfaNI GCATC 2 cut(s) 433, 598
SmiMI CAYNNNNRTG 1 cut(s) 458
Sse9I AATT 5 cut(s) 68, 496, 650, 690, 698
SseBI AGGCCT 1 cut(s) 365
SsiI CCGC 1 cut(s) 581
SspMI CTAG 2 cut(s) 333, 765
StuI AGGCCT 1 cut(s) 365
StyI CCWWGG 1 cut(s) 518
TaqI TCGA 2 cut(s) 252, 672
TasI AATT 5 cut(s) 68, 496, 650, 690, 698
TatI WGTACW 1 cut(s) 679
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 5 cut(s) 29, 315, 375, 723, 755
Tru9I TTAA 5 cut(s) 29, 315, 375, 723, 755
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 3 cut(s) 227, 448, 635
TseI GCWGC 2 cut(s) 5, 611
Tsp45I GTSAC 3 cut(s) 227, 448, 635
TspDTI ATGAA 5 cut(s) 105, 292, 472, 602, 606
TspRI CASTG 1 cut(s) 232
VneI GTGCAC 1 cut(s) 388
XapI RAATTY 4 cut(s) 68, 496, 650, 690
XspI CTAG 2 cut(s) 333, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.