Rh6BG243600

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000199
Physical Location & Seq
Forward (+)
45373520 .. 45373819
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG243600.1

Sequence Viewer

Length: 273 bp
ATGGCTTACCACACTCGCTCTAACAACTTCCCATCAAGGCCACACCCCATCATTCAAGAAGTTGATGAACATTTGTGCAGATTGAGTTCATCCGAGTCCACATCCACATCTTCATCATCAATAAGCAACAAACTAAATGGCCTGTTGCTTCAGTTGCAAGGCACCCAACAAGCATTAGCACAAGAGCAACAACAGAAATGGGCTAATGAGCTATTAAACGGCTGTCTCCGGCTCTTGGATATTTGTAACACTGCAAAGGATGCCCTCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

90

Amino Acids

9.98

Weight (kDa)

6.25

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 49 - 90 1.5e-13 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 230
AoxI GGCC 2 cut(s) 38, 139
BanI GGYRCC 1 cut(s) 161
BccI CCATC 2 cut(s) 40, 56
BceAI ACGGC 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 163
BmsI GCATC 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 235
BseGI GGATG 3 cut(s) 89, 101, 265
BseLI CCNNNNNNNGG 1 cut(s) 235
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 2 cut(s) 40, 141
BshNI GGYRCC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 2 cut(s) 40, 141
BspANI GGCC 2 cut(s) 40, 141
BspLI GGNNCC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 161
BstAPI GCANNNNNTGC 1 cut(s) 260
BstF5I GGATG 3 cut(s) 89, 101, 265
BstMAI GTCTC 1 cut(s) 230
BstMWI GCNNNNNNNGC 2 cut(s) 154, 260
BsuRI GGCC 2 cut(s) 40, 141
BtsCI GGATG 3 cut(s) 89, 101, 265
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
CviJI RGCY 7 cut(s) 5, 40, 141, 203, 211, 222, 232
CviKI_1 RGCY 7 cut(s) 5, 40, 141, 203, 211, 222, 232
Eco57I CTGAAG 1 cut(s) 134
FokI GGATG 2 cut(s) 76, 88
HaeIII GGCC 2 cut(s) 40, 141
HapII CCGG 1 cut(s) 229
HinfI GANTC 1 cut(s) 95
HpaII CCGG 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 78, 157, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 260
LpnPI CCDG 2 cut(s) 155, 242
LweI GCATC 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 245
MboII GAAGA 1 cut(s) 102
MlyI GAGTC 1 cut(s) 104
MseI TTAA 1 cut(s) 215
MspI CCGG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 154, 260
NlaIV GGNNCC 1 cut(s) 163
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 215
SchI GAGTC 1 cut(s) 104
SetI ASST 1 cut(s) 213
SfaNI GCATC 1 cut(s) 250
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 1 cut(s) 256
TspDTI ATGAA 3 cut(s) 78, 81, 102
TspRI CASTG 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.