Rh5AG427100

Arabidopsis protein of unknown function

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
73572148 .. 73572714
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG427100.1

Sequence Viewer

Length: 258 bp
ATGAGCTTCATGAGTGAGGTTCCAAAATACCATACTTGTAGGAAGGATGTCAAGAAGGCAATCAATAAAGCCTCAAAGCTCAGAGAAAGAACGAGCACAGACAAAACTCATGAGACTCTAGCCTTTGTTAAGATGTTGAAAGAGTTAGATGCAGGCACCTCTGCCATATTTGTACCAAAGCAGCAAGCCACAATGCACATTTCAAAGCCCCCACCAACGTCCCAAAACAGAACCAGTTTTATGTTACCTAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.67

Weight (kDa)

10.07

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AfaI GTAC 1 cut(s) 174
AgsI TTSAA 2 cut(s) 139, 204
AluBI AGCT 2 cut(s) 6, 79
AluI AGCT 2 cut(s) 6, 79
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
BmiI GGNNCC 2 cut(s) 21, 157
BmsI GCATC 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 193
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 98
BslFI GGGAC 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 93
BspHI TCATGA 2 cut(s) 9, 109
BspLI GGNNCC 2 cut(s) 21, 157
BspT107I GGYRCC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 154, 186
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 154, 186
CciI TCATGA 2 cut(s) 9, 109
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 10, 110
CviJI RGCY 6 cut(s) 6, 71, 79, 122, 188, 208
CviKI_1 RGCY 6 cut(s) 6, 71, 79, 122, 188, 208
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 80
FaeI CATG 2 cut(s) 13, 113
FaiI YATR 5 cut(s) 11, 33, 111, 167, 242
FaqI GGGAC 1 cut(s) 205
FatI CATG 2 cut(s) 9, 109
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 182
Hin1II CATG 2 cut(s) 13, 113
HinfI GANTC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 3 cut(s) 10, 52, 110
HpyAV CCTTC 2 cut(s) 37, 49
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 152, 196
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 2 cut(s) 13, 113
LpnPI CCDG 2 cut(s) 138, 247
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 1 cut(s) 253
MlyI GAGTC 1 cut(s) 109
MnlI CCTC 3 cut(s) 10, 82, 169
MseI TTAA 1 cut(s) 129
NlaIII CATG 2 cut(s) 13, 113
NlaIV GGNNCC 2 cut(s) 21, 157
PagI TCATGA 2 cut(s) 9, 109
PkrI GCNGC 1 cut(s) 183
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 21, 157
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 182
SchI GAGTC 1 cut(s) 109
SduI GDGCHC 1 cut(s) 98
SetI ASST 6 cut(s) 8, 21, 81, 161, 221, 250
SfaNI GCATC 1 cut(s) 139
SgeI CNNG 9 cut(s) 22, 48, 64, 105, 122, 131, 165, 197, 246
Sse9I AATT 1 cut(s) 253
SspMI CTAG 1 cut(s) 119
TaiI ACGT 1 cut(s) 221
TasI AATT 1 cut(s) 253
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseI GCWGC 1 cut(s) 181
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.