FvH4_2g16220

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000199
Physical Location & Seq
Reverse (-)
14179311 .. 14180375
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16220.t1

Sequence Viewer

Length: 876 bp
ATGGCTTACCACACTCGCTCTAACAGCTTCCCCTCCAGGTCCCATCCTCTCATTCAAGAAGTTGATGAACAATTGTGCAGATTGAGGTCTTCCGAAGCTACCTCCACATCATCATCATCATCATCATCATCATCAATAAGCTACCAACTTCATGGTCTGCAAGACTTGCATGATTGTGTTGATAGGTTGCTTCAATTGCCACTCACCCAACAAGCCTTGGCGCAAGAGATACATGATAATTGGGCTAATGAACTATTAGATCGCTCTCTCAGGCACTTGGATATTTGCAGCACTGCCAAAGATGCCTTGTTGCTAACCAAGGAATGCATTCAGAACCTTCAATCAATCATTCGAAGAAGAGGAGGAGGAGAATCTGATTTACTCGCCAGTGAAGTTAGGAAATACTTCAGCTCCAGGAAGATGGTGAAAAAGTCACTCCAAAAGGCTATGGGGAATCTGAAGGGAATTGAAAACAAATACAATTTCTCTTCCCTCAGCAAGGACCAAGAGACAATCGCCATCATTAACAAGCTGAGAGACGTTGAAGCAGTCACACGAACAGTGTTTGAAGCAATATTGTCTTTTATCTCTGGCCCAAAGGTATCAAGCAGCTGGTCATTTATATCCAAGAAGTTGCAGTCAAAAAGAGTAGCTTGTGAGGAAGAACAAGTAAACGAATTTGCAGAGGTTGATGCTGCATTGAAGTCACACAAGAGTTTAGACAATGCACAAAACCAGCTCAACAATCTGGAGACTTGCATTCAAGACCATGAAGAAGGACTCGATTACAAGACATTCAACAATTTGGTTCCTCGCCAGATATATGGTTCATACATGATAAGAATTCCTGACAATCCAATTACAAGACCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

292

Amino Acids

32.93

Weight (kDa)

7.65

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 50 - 263 2.8e-71 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 677, 843
AcuI CTGAAG 2 cut(s) 391, 479
AfiI CCNNNNNNNGG 1 cut(s) 499
AgsI TTSAA 9 cut(s) 56, 194, 341, 470, 545, 569, 703, 764, 799
AjnI CCWGG 2 cut(s) 35, 413
AluBI AGCT 8 cut(s) 27, 98, 141, 411, 532, 612, 653, 739
AluI AGCT 8 cut(s) 27, 98, 141, 411, 532, 612, 653, 739
Alw26I GTCTC 3 cut(s) 503, 531, 746
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 3 cut(s) 288, 609, 695
ApoI RAATTY 2 cut(s) 677, 843
Asp700I GAANNNNTTC 2 cut(s) 327, 404
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 3 cut(s) 39, 502, 593
AsuHPI GGTGA 2 cut(s) 196, 436
AsuII TTCGAA 1 cut(s) 352
AvaII GGWCC 2 cut(s) 39, 502
BbsI GAAGAC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 494
BbvI GCAGC 3 cut(s) 300, 621, 682
BccI CCATC 3 cut(s) 51, 415, 527
BciT130I CCWGG 2 cut(s) 37, 415
BcoDI GTCTC 3 cut(s) 503, 531, 746
BisI GCNGC 3 cut(s) 289, 610, 696
BlsI GCNGC 3 cut(s) 290, 611, 697
Bme1390I CCNGG 2 cut(s) 37, 415
Bme18I GGWCC 2 cut(s) 39, 502
BmgT120I GGNCC 3 cut(s) 39, 502, 593
BmiI GGNNCC 2 cut(s) 41, 810
BmrFI CCNGG 2 cut(s) 37, 415
BmsI GCATC 2 cut(s) 292, 682
BpiI GAAGAC 1 cut(s) 81
BpmI CTGGAG 3 cut(s) 19, 397, 770
Bpu10I CCTNAGC 1 cut(s) 494
Bpu14I TTCGAA 1 cut(s) 352
BsaJI CCNNGG 2 cut(s) 216, 318
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse1I ACTGG 1 cut(s) 387
BseBI CCWGG 2 cut(s) 37, 415
BseDI CCNNGG 2 cut(s) 216, 318
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMII CTCAG 3 cut(s) 283, 508, 524
BseNI ACTGG 1 cut(s) 387
BseRI GAGGAG 3 cut(s) 375, 378, 381
BseXI GCAGC 3 cut(s) 300, 621, 682
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 1 cut(s) 594
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 499
BsmAI GTCTC 3 cut(s) 503, 531, 746
BsmBI CGTCTC 1 cut(s) 531
BsmFI GGGAC 1 cut(s) 25
BsmI GAATGC 3 cut(s) 327, 329, 759
BsnI GGCC 1 cut(s) 594
Bsp119I TTCGAA 1 cut(s) 352
Bsp143I GATC 1 cut(s) 259
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 3 cut(s) 282, 507, 525
BspLI GGNNCC 2 cut(s) 41, 810
BspT104I TTCGAA 1 cut(s) 352
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 2 cut(s) 216, 318
BssMI GATC 1 cut(s) 259
BssT1I CCWWGG 2 cut(s) 216, 318
Bst2UI CCWGG 2 cut(s) 37, 415
Bst4CI ACNGT 1 cut(s) 562
Bst6I CTCTTC 2 cut(s) 352, 493
BstAPI GCANNNNNTGC 1 cut(s) 166
BstBI TTCGAA 1 cut(s) 352
BstDEI CTNAG 3 cut(s) 269, 494, 533
BstENI CCTNNNNNAGG 1 cut(s) 497
BstF5I GGATG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 3 cut(s) 503, 531, 746
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 4 cut(s) 24, 166, 196, 302
BstNI CCWGG 2 cut(s) 37, 415
BstSCI CCNGG 2 cut(s) 35, 413
BstV1I GCAGC 3 cut(s) 300, 621, 682
BstV2I GAAGAC 1 cut(s) 81
BstXI CCANNNNNNTGG 3 cut(s) 152, 421, 824
BsuRI GGCC 1 cut(s) 594
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 3 cut(s) 291, 394, 567
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 3 cut(s) 39, 502, 593
CviAII CATG 5 cut(s) 152, 170, 233, 770, 835
DdeI CTNAG 3 cut(s) 269, 494, 533
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 352, 493
EarI CTCTTC 2 cut(s) 352, 493
Eco130I CCWWGG 2 cut(s) 216, 318
Eco47I GGWCC 2 cut(s) 39, 502
Eco57I CTGAAG 2 cut(s) 391, 479
EcoNI CCTNNNNNAGG 1 cut(s) 497
EcoO109I RGGNCCY 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 843
EcoRII CCWGG 2 cut(s) 35, 413
EcoT14I CCWWGG 2 cut(s) 216, 318
EcoT22I ATGCAT 1 cut(s) 329
ErhI CCWWGG 2 cut(s) 216, 318
Esp3I CGTCTC 1 cut(s) 531
FaeI CATG 5 cut(s) 155, 173, 236, 773, 838
FalI AAGNNNNNCTT 2 cut(s) 637, 669
FaqI GGGAC 1 cut(s) 25
FatI CATG 5 cut(s) 151, 169, 232, 769, 834
Fnu4HI GCNGC 3 cut(s) 289, 610, 696
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 3 cut(s) 289, 610, 696
GlaI GCGC 1 cut(s) 222
GluI GCNGC 3 cut(s) 289, 610, 696
GsuI CTGGAG 3 cut(s) 19, 397, 770
HaeIII GGCC 1 cut(s) 594
HhaI GCGC 1 cut(s) 223
Hin1II CATG 5 cut(s) 155, 173, 236, 773, 838
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 3 cut(s) 371, 454, 780
HphI GGTGA 2 cut(s) 196, 436
Hpy166II GTNNAC 1 cut(s) 673
Hpy188I TCNGA 4 cut(s) 94, 333, 376, 459
Hpy188III TCNNGA 4 cut(s) 56, 749, 764, 848
Hpy8I GTNNAC 1 cut(s) 673
HpyAV CCTTC 3 cut(s) 347, 454, 770
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4IV ACGT 1 cut(s) 540
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 166, 196, 302
HpyF3I CTNAG 3 cut(s) 269, 494, 533
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 5 cut(s) 155, 173, 236, 773, 838
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 3 cut(s) 300, 621, 682
LweI GCATC 2 cut(s) 292, 682
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 3 cut(s) 432, 550, 705
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 7 cut(s) 81, 366, 369, 430, 480, 674, 785
MfeI CAATTG 2 cut(s) 71, 194
MluCI AATT 9 cut(s) 71, 194, 238, 465, 481, 677, 802, 843, 858
MlyI GAGTC 1 cut(s) 774
Mph1103I ATGCAT 1 cut(s) 329
MroXI GAANNNNTTC 2 cut(s) 327, 404
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 612
MspR9I CCNGG 2 cut(s) 37, 415
MunI CAATTG 2 cut(s) 71, 194
Mva1269I GAATGC 3 cut(s) 327, 329, 759
MvaI CCWGG 2 cut(s) 37, 415
MwoI GCNNNNNNNGC 4 cut(s) 24, 166, 196, 302
NdeII GATC 1 cut(s) 259
NlaIII CATG 5 cut(s) 155, 173, 236, 773, 838
NlaIV GGNNCC 2 cut(s) 41, 810
NmuCI GTSAC 3 cut(s) 432, 550, 705
NsiI ATGCAT 1 cut(s) 329
NspV TTCGAA 1 cut(s) 352
PctI GAATGC 3 cut(s) 327, 329, 759
PdmI GAANNNNTTC 2 cut(s) 327, 404
PfeI GAWTC 2 cut(s) 371, 454
PfoI TCCNGGA 1 cut(s) 413
PkrI GCNGC 3 cut(s) 290, 611, 697
PleI GAGTC 1 cut(s) 774
PpsI GAGTC 1 cut(s) 774
PpuMI RGGWCCY 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 39
Psp6I CCWGG 2 cut(s) 35, 413
PspGI CCWGG 2 cut(s) 35, 413
PspN4I GGNNCC 2 cut(s) 41, 810
PspPI GGNCC 3 cut(s) 39, 502, 593
PspPPI RGGWCCY 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 612
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 3 cut(s) 289, 610, 696
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 3 cut(s) 39, 502, 593
SchI GAGTC 1 cut(s) 774
ScrFI CCNGG 2 cut(s) 37, 415
SfaNI GCATC 2 cut(s) 292, 682
SfuI TTCGAA 1 cut(s) 352
SinI GGWCC 2 cut(s) 39, 502
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 9 cut(s) 71, 194, 238, 465, 481, 677, 802, 843, 858
SspI AATATT 1 cut(s) 576
StyD4I CCNGG 2 cut(s) 35, 413
StyI CCWWGG 2 cut(s) 216, 318
TaaI ACNGT 1 cut(s) 562
TaiI ACGT 1 cut(s) 543
TaqI TCGA 2 cut(s) 352, 783
TasI AATT 9 cut(s) 71, 194, 238, 465, 481, 677, 802, 843, 858
TfiI GAWTC 2 cut(s) 371, 454
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 3 cut(s) 298, 394, 567
TseFI GTSAC 3 cut(s) 432, 550, 705
TseI GCWGC 3 cut(s) 288, 609, 695
Tsp45I GTSAC 3 cut(s) 432, 550, 705
TspDTI ATGAA 5 cut(s) 81, 140, 264, 786, 819
TspRI CASTG 3 cut(s) 298, 394, 567
VpaK11BI GGWCC 2 cut(s) 39, 502
XagI CCTNNNNNAGG 1 cut(s) 497
XapI RAATTY 2 cut(s) 677, 843
XmnI GAANNNNTTC 2 cut(s) 327, 404
Zsp2I ATGCAT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.