Rroxscaffold_7G00188540

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000199
Physical Location & Seq
Forward (+)
28127488 .. 28128327
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188540.1

Sequence Viewer

Length: 735 bp
ATGGCTTACCACACTCGATCTAACAGCTTACCCTCTAGGCCACACCCAGTCAATCAAGAAGTTGATGAATATTTGTCCAGATTGAGGTCTTCTGAAACAACTTCCACATCATCTATAGGCCACAGACTAAGTGGTCTTCAAGACTTACATGATTGTATTGATAGCACTGCCAAGGATGCCATGTTGCAAACCAAGGAGTGCATACAAGAACTTCAATCAATCATTCGAAGAAGGCGTAAAGACCAATCTGGAGTGGTCACAAGTGAGGTTAGAAAATACTTAACCTTGAGGAAGACAGTGAAAAAGGCAATCCACAAGGCTTTGGGGAATCTGAAGGCAAACAGATCCACTTTCTCTTCGCTTAACAACAACCAAGAGACTATCTCCATTTTTAGCAAGCTGAGAGATGTTGAAGTAGTCACTCTCACAGTGTTGGAATCAGTGTTGTCCTTCATCTCTGGGCCAAAGTCAAAGCCTAGCAGCTGGTCTTTGGTTTCCAAGATGGTGCAGTCAAAAAGAATAGATTGCGAGGAAGAAATGAATGTAAACGAATTTGCACAAGTGGATGCTGCATTGAAGTCACACACGAGTTTGGACGATGCACACAACCAATTTAACAATCTGAACTCATGCATTCAAGACCAAGAAGAAGGACTCGACTGCCTATTTAGGCTACTGATCAAAACAAGAGTCTCCCTTCTCAACATCTTAAGCCACTCGATATTAGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

244

Amino Acids

27.52

Weight (kDa)

8.79

Isoelectric Point (pI)

61.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 55 - 236 4.3e-58 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 132
AclWI GGATC 1 cut(s) 339
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 84
AflII CTTAAG 1 cut(s) 709
AgsI TTSAA 5 cut(s) 140, 215, 413, 577, 638
AluBI AGCT 3 cut(s) 27, 400, 483
AluI AGCT 3 cut(s) 27, 400, 483
Alw26I GTCTC 2 cut(s) 371, 697
AlwI GGATC 1 cut(s) 339
AoxI GGCC 3 cut(s) 38, 118, 461
ApeKI GCWGC 2 cut(s) 480, 569
ApoI RAATTY 1 cut(s) 551
ArsI GACNNNNNNTTYG 2 cut(s) 675, 707
AspS9I GGNCC 1 cut(s) 461
AsuII TTCGAA 1 cut(s) 226
BauI CACGAG 1 cut(s) 586
BbsI GAAGAC 3 cut(s) 81, 128, 299
BbvI GCAGC 2 cut(s) 492, 556
BccI CCATC 1 cut(s) 496
BclI TGATCA 1 cut(s) 678
BcoDI GTCTC 2 cut(s) 371, 697
BfaI CTAG 2 cut(s) 36, 477
BfmI CTRYAG 1 cut(s) 114
BfrI CTTAAG 1 cut(s) 709
BisI GCNGC 2 cut(s) 481, 570
BlsI GCNGC 2 cut(s) 482, 571
BmgT120I GGNCC 1 cut(s) 461
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 3 cut(s) 166, 556, 589
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 3 cut(s) 81, 128, 299
BplI GAGNNNNNCTC 2 cut(s) 368, 400
BpmI CTGGAG 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 307
BsaJI CCNNGG 2 cut(s) 171, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 171, 192
BseGI GGATG 2 cut(s) 181, 571
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 492, 556
BsgI GTGCAG 1 cut(s) 527
BshFI GGCC 3 cut(s) 40, 120, 463
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 2 cut(s) 371, 697
BsmI GAATGC 1 cut(s) 633
BsnI GGCC 3 cut(s) 40, 120, 463
Bsp119I TTCGAA 1 cut(s) 226
Bsp143I GATC 3 cut(s) 17, 344, 678
BspANI GGCC 3 cut(s) 40, 120, 463
BspCNI CTCAG 1 cut(s) 393
BspPI GGATC 1 cut(s) 339
BspT104I TTCGAA 1 cut(s) 226
BspTI CTTAAG 1 cut(s) 709
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 171, 192
BssMI GATC 3 cut(s) 17, 344, 678
BssSI CACGAG 1 cut(s) 586
BssT1I CCWWGG 2 cut(s) 171, 192
Bst2BI CACGAG 1 cut(s) 586
Bst4CI ACNGT 2 cut(s) 298, 430
Bst6I CTCTTC 1 cut(s) 361
BstAFI CTTAAG 1 cut(s) 709
BstBI TTCGAA 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 398
BstDEI CTNAG 2 cut(s) 128, 401
BstF5I GGATG 2 cut(s) 181, 571
BstKTI GATC 3 cut(s) 20, 347, 681
BstMAI GTCTC 2 cut(s) 371, 697
BstMBI GATC 3 cut(s) 17, 344, 678
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 492, 556
BstV2I GAAGAC 3 cut(s) 81, 128, 299
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BsuRI GGCC 3 cut(s) 40, 120, 463
BtsCI GGATG 2 cut(s) 181, 571
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 4 cut(s) 165, 303, 435, 447
Cac8I GCNNGC 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 461
CviAII CATG 3 cut(s) 149, 181, 630
DdeI CTNAG 2 cut(s) 128, 401
DpnI GATC 3 cut(s) 19, 346, 680
DpnII GATC 3 cut(s) 17, 344, 678
DrdI GACNNNNNNGTC 1 cut(s) 132
DseDI GACNNNNNNGTC 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 171, 192
Eco57I CTGAAG 1 cut(s) 353
EcoT14I CCWWGG 2 cut(s) 171, 192
EcoT22I ATGCAT 1 cut(s) 635
ErhI CCWWGG 2 cut(s) 171, 192
FaeI CATG 3 cut(s) 152, 184, 633
FaiI YATR 5 cut(s) 116, 150, 182, 203, 631
FatI CATG 3 cut(s) 148, 180, 629
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 2 cut(s) 481, 570
FokI GGATG 2 cut(s) 188, 578
Fsp4HI GCNGC 2 cut(s) 481, 570
FspBI CTAG 2 cut(s) 36, 477
GluI GCNGC 2 cut(s) 481, 570
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 3 cut(s) 40, 120, 463
Hin1II CATG 3 cut(s) 152, 184, 633
HinfI GANTC 4 cut(s) 328, 437, 654, 690
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 3 cut(s) 94, 333, 624
Hpy188III TCNNGA 5 cut(s) 56, 78, 140, 249, 638
Hpy8I GTNNAC 1 cut(s) 547
HpyAV CCTTC 5 cut(s) 225, 328, 460, 644, 707
HpyCH4III ACNGT 2 cut(s) 298, 430
HpyCH4V TGCA 7 cut(s) 187, 201, 508, 557, 572, 602, 633
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 128, 401
Hsp92II CATG 3 cut(s) 152, 184, 633
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 3 cut(s) 17, 344, 678
LpnPI CCDG 5 cut(s) 60, 91, 234, 444, 469
Lsp1109I GCAGC 2 cut(s) 492, 556
LweI GCATC 3 cut(s) 166, 556, 589
MaeI CTAG 2 cut(s) 36, 477
MaeIII GTNAC 3 cut(s) 256, 418, 579
MalI GATC 3 cut(s) 19, 346, 680
MboI GATC 3 cut(s) 17, 344, 678
MboII GAAGA 7 cut(s) 81, 128, 240, 304, 348, 545, 659
MflI RGATCY 1 cut(s) 344
MluCI AATT 2 cut(s) 551, 611
MlyI GAGTC 2 cut(s) 648, 699
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 5 cut(s) 43, 78, 259, 282, 523
Mph1103I ATGCAT 1 cut(s) 635
MseI TTAA 4 cut(s) 281, 363, 615, 710
MspA1I CMGCKG 1 cut(s) 483
MspCI CTTAAG 1 cut(s) 709
Mva1269I GAATGC 1 cut(s) 633
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 3 cut(s) 17, 344, 678
NlaIII CATG 3 cut(s) 152, 184, 633
NmuCI GTSAC 3 cut(s) 256, 418, 579
NsiI ATGCAT 1 cut(s) 635
NspV TTCGAA 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 232
PctI GAATGC 1 cut(s) 633
PfeI GAWTC 2 cut(s) 328, 437
PkrI GCNGC 2 cut(s) 482, 571
PleI GAGTC 2 cut(s) 648, 698
PpsI GAGTC 2 cut(s) 648, 698
PspPI GGNCC 1 cut(s) 461
PsuI RGATCY 1 cut(s) 344
PvuII CAGCTG 1 cut(s) 483
SaqAI TTAA 4 cut(s) 281, 363, 615, 710
SatI GCNGC 2 cut(s) 481, 570
Sau3AI GATC 3 cut(s) 17, 344, 678
Sau96I GGNCC 1 cut(s) 461
SchI GAGTC 2 cut(s) 648, 699
SetI ASST 6 cut(s) 29, 89, 270, 287, 402, 485
SfaNI GCATC 3 cut(s) 166, 556, 589
SfcI CTRYAG 1 cut(s) 114
SfuI TTCGAA 1 cut(s) 226
SmlI CTYRAG 2 cut(s) 286, 709
SmoI CTYRAG 2 cut(s) 286, 709
Sse9I AATT 2 cut(s) 551, 611
SspI AATATT 1 cut(s) 71
SspMI CTAG 2 cut(s) 36, 477
StyI CCWWGG 2 cut(s) 171, 192
TaaI ACNGT 2 cut(s) 298, 430
TaqI TCGA 4 cut(s) 16, 226, 657, 719
TasI AATT 2 cut(s) 551, 611
TfiI GAWTC 2 cut(s) 328, 437
Tru1I TTAA 4 cut(s) 281, 363, 615, 710
Tru9I TTAA 4 cut(s) 281, 363, 615, 710
TscAI CASTG 4 cut(s) 172, 303, 435, 447
TseFI GTSAC 3 cut(s) 256, 418, 579
TseI GCWGC 2 cut(s) 480, 569
Tsp45I GTSAC 3 cut(s) 256, 418, 579
TspDTI ATGAA 3 cut(s) 81, 442, 554
TspRI CASTG 4 cut(s) 172, 303, 435, 447
Vha464I CTTAAG 1 cut(s) 709
XapI RAATTY 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XspI CTAG 2 cut(s) 36, 477
Zsp2I ATGCAT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.