Rroxscaffold_7G00188450

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000199
Physical Location & Seq
Reverse (-)
28028503 .. 28029335
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188450.1

Sequence Viewer

Length: 741 bp
ATGGCTTACCACACTCGCTCTAACAGCTTCCCATCAAGGCCACACCCCATCATTCAAGAAGTTGATGAACATTTGTGCAGATTGAGTTCATCCGAGTCCACATCCACATCTTCATTATCAATAAGCAACAAACTAAATGGCCTGCAAGACTTACTTTATTGTGTTGATAGGTTGCTTCAGTTGCAAGGCACCCAACAAGCATTACCACAAGAGCAACAACAGAAATGGGCTAATGAGCTATTAGACGGCTCTCTCTGGCTCTTGGATATTTGTAGCACTGCAAAGGATGCCCTCTCGCAGACCAAGGAGTGCATACAAGACCTTCAATCAATCATTAGAAGAAAACGGGGAGGGAATAAAAACAGATCCACTTTCTCATCCGCCAACAAGGACCACGAAACTATCGCCATTGTCAGCAAGCTGAGAGATGTTGAAGCAATCACTCTCACAGTCTTTGAATCAGTGCTGTCCTTCATCTCTGGGCCGAAGTCAAAGCCTAACAGCTGGTCTTTCGTTTCCAACATTGTGCAGTCTAAAAGAATAGCTTGTGATGAAGAAGCGTATGTAAATGAATTTGCAGAGGTTGATGCTGCATTGAAGTCATTAAAGAGTGCAGAAAATGCACAGAACCAGCTTAACGATCTGGAATCATGCATTCAAGACCAAGAAGAAGGACTTGAGTGCCTATTTAGGCAATTGATCAAAACTAGAGTCTCCCTTCTCAACATCCTGAGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

246

Amino Acids

27.6

Weight (kDa)

5.61

Isoelectric Point (pI)

61.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 119 4.4e-29 Protein BPS1
BPS1 PF03087 120 - 243 1.4e-38 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 1 cut(s) 381
AclWI GGATC 1 cut(s) 360
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 1 cut(s) 161
AgsI TTSAA 6 cut(s) 56, 326, 434, 458, 598, 659
AluBI AGCT 6 cut(s) 27, 238, 421, 504, 545, 634
AluI AGCT 6 cut(s) 27, 238, 421, 504, 545, 634
Alw26I GTCTC 1 cut(s) 718
AlwI GGATC 1 cut(s) 360
AoxI GGCC 3 cut(s) 38, 139, 482
ApeKI GCWGC 1 cut(s) 590
ApoI RAATTY 1 cut(s) 572
ArsI GACNNNNNNTTYG 2 cut(s) 696, 728
AspS9I GGNCC 2 cut(s) 391, 482
AvaII GGWCC 1 cut(s) 391
BanI GGYRCC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 577
BccI CCATC 2 cut(s) 40, 56
BceAI ACGGC 1 cut(s) 262
BclI TGATCA 1 cut(s) 699
BcoDI GTCTC 1 cut(s) 718
BfaI CTAG 1 cut(s) 708
BisI GCNGC 1 cut(s) 591
BlsI GCNGC 1 cut(s) 592
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 2 cut(s) 391, 482
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 2 cut(s) 277, 577
Bpu10I CCTNAGC 1 cut(s) 731
BpuEI CTTGAG 1 cut(s) 698
BsaJI CCNNGG 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 5 cut(s) 89, 101, 292, 377, 726
BseMII CTCAG 2 cut(s) 413, 722
BseXI GCAGC 1 cut(s) 577
BsgI GTGCAG 3 cut(s) 97, 548, 633
BshFI GGCC 3 cut(s) 40, 141, 484
BshNI GGYRCC 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 718
BsmI GAATGC 1 cut(s) 654
BsnI GGCC 3 cut(s) 40, 141, 484
Bsp143I GATC 3 cut(s) 365, 640, 699
BspACI CCGC 1 cut(s) 381
BspANI GGCC 3 cut(s) 40, 141, 484
BspCNI CTCAG 2 cut(s) 414, 723
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 3 cut(s) 365, 640, 699
BssT1I CCWWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 451
BstAPI GCANNNNNTGC 2 cut(s) 287, 620
BstC8I GCNNGC 2 cut(s) 143, 419
BstDEI CTNAG 2 cut(s) 422, 731
BstF5I GGATG 5 cut(s) 89, 101, 292, 377, 726
BstKTI GATC 3 cut(s) 368, 643, 702
BstMAI GTCTC 1 cut(s) 718
BstMBI GATC 3 cut(s) 365, 640, 699
BstMWI GCNNNNNNNGC 4 cut(s) 24, 181, 287, 620
BstV1I GCAGC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuRI GGCC 3 cut(s) 40, 141, 484
BtsCI GGATG 5 cut(s) 89, 101, 292, 377, 726
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 276, 468
Cac8I GCNNGC 2 cut(s) 143, 419
Cfr13I GGNCC 2 cut(s) 391, 482
CviAII CATG 1 cut(s) 651
DdeI CTNAG 2 cut(s) 422, 731
DpnI GATC 3 cut(s) 367, 642, 701
DpnII GATC 3 cut(s) 365, 640, 699
EciI GGCGGA 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 656
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 1 cut(s) 654
FaiI YATR 3 cut(s) 314, 564, 652
FalI AAGNNNNNCTT 6 cut(s) 138, 170, 529, 561, 660, 692
FatI CATG 1 cut(s) 650
FbaI TGATCA 1 cut(s) 699
Fnu4HI GCNGC 1 cut(s) 591
FokI GGATG 5 cut(s) 76, 88, 299, 364, 713
Fsp4HI GCNGC 1 cut(s) 591
FspBI CTAG 1 cut(s) 708
GluI GCNGC 1 cut(s) 591
HaeIII GGCC 3 cut(s) 40, 141, 484
Hin1II CATG 1 cut(s) 654
HinfI GANTC 4 cut(s) 95, 458, 647, 711
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 4 cut(s) 56, 644, 659, 730
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 4 cut(s) 332, 481, 665, 728
HpyCH4III ACNGT 1 cut(s) 451
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 181, 287, 620
HpyF3I CTNAG 2 cut(s) 422, 731
Hsp92II CATG 1 cut(s) 654
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 3 cut(s) 365, 640, 699
LpnPI CCDG 6 cut(s) 155, 241, 465, 490, 629, 644
Lsp1109I GCAGC 1 cut(s) 577
LweI GCATC 2 cut(s) 277, 577
MaeI CTAG 1 cut(s) 708
MalI GATC 3 cut(s) 367, 642, 701
MboI GATC 3 cut(s) 365, 640, 699
MboII GAAGA 4 cut(s) 102, 351, 566, 680
MfeI CAATTG 1 cut(s) 695
MflI RGATCY 1 cut(s) 365
MluCI AATT 2 cut(s) 572, 695
MlyI GAGTC 2 cut(s) 104, 720
MmeI TCCRAC 1 cut(s) 543
MnlI CCTC 3 cut(s) 302, 344, 574
Mph1103I ATGCAT 1 cut(s) 656
MseI TTAA 2 cut(s) 605, 636
MspA1I CMGCKG 1 cut(s) 504
MunI CAATTG 1 cut(s) 695
Mva1269I GAATGC 1 cut(s) 654
MwoI GCNNNNNNNGC 4 cut(s) 24, 181, 287, 620
NdeII GATC 3 cut(s) 365, 640, 699
NlaIII CATG 1 cut(s) 654
NlaIV GGNNCC 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 656
PctI GAATGC 1 cut(s) 654
PfeI GAWTC 2 cut(s) 458, 647
PkrI GCNGC 1 cut(s) 592
PleI GAGTC 2 cut(s) 103, 719
PpsI GAGTC 2 cut(s) 103, 719
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 391, 482
PsuI RGATCY 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 504
SaqAI TTAA 2 cut(s) 605, 636
SatI GCNGC 1 cut(s) 591
Sau3AI GATC 3 cut(s) 365, 640, 699
Sau96I GGNCC 2 cut(s) 391, 482
SchI GAGTC 2 cut(s) 104, 720
SetI ASST 9 cut(s) 29, 173, 240, 324, 423, 506, 547, 585, 636
SfaNI GCATC 2 cut(s) 277, 577
SinI GGWCC 1 cut(s) 391
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 2 cut(s) 572, 695
SsiI CCGC 1 cut(s) 381
SspMI CTAG 1 cut(s) 708
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 451
TasI AATT 2 cut(s) 572, 695
TfiI GAWTC 2 cut(s) 458, 647
Tru1I TTAA 2 cut(s) 605, 636
Tru9I TTAA 2 cut(s) 605, 636
TscAI CASTG 2 cut(s) 283, 468
TseI GCWGC 1 cut(s) 590
TspDTI ATGAA 6 cut(s) 78, 81, 102, 463, 567, 585
TspRI CASTG 2 cut(s) 283, 468
VpaK11BI GGWCC 1 cut(s) 391
XapI RAATTY 1 cut(s) 572
XspI CTAG 1 cut(s) 708
Zsp2I ATGCAT 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.