Rw3G023160

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000199
Physical Location & Seq
Forward (+)
28835160 .. 28836080
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023160.1

Sequence Viewer

Length: 870 bp
ATGGCTTCCCCCGCTCGCTCTAACAGCTTCCCCTCCAGGGCACACCCTATCATTGAAGAGGCTAATGAACAAATGTGCAGACTGAGGTCTTCTGCTGCCACCTCAACATCTTCATTATCAATAAGCCACCAAGTAAGTGGTCTACAAGACTTGCATGAATGTGTTGAAAGGTTGCTTCAGTTGCCCCTCAATCAACAAGTTTCAGCACAAGAGAAACATCAGAAATGCACTAATGTGCTATTAGATAGTTCTCTCAGGCTCCTGGATGATCTTCAATCTATCATAAGAAGACGAGGATGCGAATCTGGAGTACTTACAAGTGAGGTTAGGAAATACTTGACCTCCAGGAAGATGGTGAAAAAGACAATCCAAAAGGCAATGGTCAATACCAGATCCGCTTTCAATTCCCTCAACAAGGAGACTGAATCTATTTCCATTCTTAACATGTTGAGAAATGTAGAAGAAATTACTCTCACGGTGTTTGAATCATTGTTGTCCTTCATCTCGGGGCCAAAGGCATCAACAAGCTGGTCATTGGTATCCAAGATGATGCAGTCAAAAAGAGTAGCTTGTGAGGAAGAAGCAGAAATAAATGAATTCGCAGAGGTGGACGCTGCATTGAAGTCACTCAAGAGTGCAGACAATGTACAGAACCAGCTTAATAATCTGGAGTCAGGCATCCAAGATCAAGAAGAAGGACTTGAGTGCCTATTTAGGCAATTGATCAAAACCAGAGTCTCCCTTCACATGGAGCTATTTAATAAACCAAGATCAGTAATTGAAAAGCAAACACCAGCTAAGATGAAGATCATTTACAGGTATGTAGACCAAGCAAACTCCACCCAAATCCCCACCAACCTTTCAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

289

Amino Acids

32.49

Weight (kDa)

8.49

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 46 - 89 7.1e-11 Protein BPS1
BPS1 PF03087 90 - 248 1.3e-45 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 14
AccI GTMKAC 2 cut(s) 142, 825
AciI CCGC 2 cut(s) 12, 396
AclWI GGATC 1 cut(s) 387
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 2 cut(s) 312, 648
AfiI CCNNNNNNNGG 3 cut(s) 37, 415, 748
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 7 cut(s) 56, 167, 275, 403, 485, 622, 782
AjnI CCWGG 3 cut(s) 35, 261, 344
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 6 cut(s) 27, 528, 569, 658, 754, 797
AluI AGCT 6 cut(s) 27, 528, 569, 658, 754, 797
Alw26I GTCTC 2 cut(s) 413, 742
AlwI GGATC 1 cut(s) 387
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 1 cut(s) 509
ApeKI GCWGC 2 cut(s) 95, 614
ApoI RAATTY 1 cut(s) 596
ArsI GACNNNNNNTTYG 2 cut(s) 720, 752
AspS9I GGNCC 1 cut(s) 509
AsuHPI GGTGA 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 43
BarI GAAGNNNNNNTAC 2 cut(s) 797, 829
BbsI GAAGAC 2 cut(s) 81, 295
BbvI GCAGC 2 cut(s) 82, 601
BccI CCATC 1 cut(s) 346
BciT130I CCWGG 3 cut(s) 37, 263, 346
BciVI GTATCC 1 cut(s) 550
BclI TGATCA 1 cut(s) 723
BcoDI GTCTC 2 cut(s) 413, 742
BfuI GTATCC 1 cut(s) 550
BisI GCNGC 2 cut(s) 96, 615
BlsI GCNGC 2 cut(s) 97, 616
BmcAI AGTACT 1 cut(s) 312
Bme1390I CCNGG 3 cut(s) 37, 263, 346
BmeT110I CYCGRG 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 2 cut(s) 260, 510
BmrFI CCNGG 3 cut(s) 37, 263, 346
BmsI GCATC 4 cut(s) 287, 527, 540, 687
BoxI GACNNNNGTC 1 cut(s) 85
BpiI GAAGAC 2 cut(s) 81, 295
BpmI CTGGAG 4 cut(s) 19, 327, 328, 689
BpuEI CTTGAG 2 cut(s) 614, 722
BsaBI GATNNNNATC 2 cut(s) 301, 806
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 415, 748
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 2 cut(s) 301, 806
BseBI CCWGG 3 cut(s) 37, 263, 346
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 271, 302, 678
BseJI GATNNNNATC 2 cut(s) 301, 806
BseLI CCNNNNNNNGG 3 cut(s) 37, 415, 748
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 74, 268
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 2 cut(s) 82, 601
BsgI GTGCAG 2 cut(s) 97, 657
BshFI GGCC 1 cut(s) 511
BsiHKCI CYCGRG 1 cut(s) 505
BslI CCNNNNNNNGG 3 cut(s) 37, 415, 748
BsmAI GTCTC 2 cut(s) 413, 742
BsnI GGCC 1 cut(s) 511
BsoBI CYCGRG 1 cut(s) 505
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 6 cut(s) 268, 392, 685, 723, 770, 807
BspACI CCGC 2 cut(s) 12, 396
BspANI GGCC 1 cut(s) 511
BspCNI CTCAG 2 cut(s) 75, 267
BspLI GGNNCC 2 cut(s) 260, 510
BspPI GGATC 1 cut(s) 387
BsrBI CCGCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 384
BsrGI TGTACA 1 cut(s) 646
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 6 cut(s) 268, 392, 685, 723, 770, 807
Bst2UI CCWGG 3 cut(s) 37, 263, 346
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 646
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 3 cut(s) 83, 254, 798
BstENI CCTNNNNNAGG 1 cut(s) 413
BstF5I GGATG 3 cut(s) 271, 302, 678
BstKTI GATC 6 cut(s) 271, 395, 688, 726, 773, 810
BstMAI GTCTC 2 cut(s) 413, 742
BstMBI GATC 6 cut(s) 268, 392, 685, 723, 770, 807
BstMWI GCNNNNNNNGC 3 cut(s) 11, 24, 181
BstNI CCWGG 3 cut(s) 37, 263, 346
BstNSI RCATGY 1 cut(s) 448
BstPAI GACNNNNGTC 1 cut(s) 85
BstSCI CCNGG 3 cut(s) 35, 261, 344
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 82, 601
BstV2I GAAGAC 2 cut(s) 81, 295
BstX2I RGATCY 1 cut(s) 392
BstXI CCANNNNNNTGG 2 cut(s) 137, 352
BstYI RGATCY 1 cut(s) 392
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 1 cut(s) 511
BtsCI GGATG 3 cut(s) 271, 302, 678
Cac8I GCNNGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 509
CseI GACGC 1 cut(s) 620
Csp6I GTAC 2 cut(s) 311, 647
CviAII CATG 3 cut(s) 155, 445, 748
CviQI GTAC 2 cut(s) 311, 647
DdeI CTNAG 3 cut(s) 83, 254, 798
DpnI GATC 6 cut(s) 270, 394, 687, 725, 772, 809
DpnII GATC 6 cut(s) 268, 392, 685, 723, 770, 807
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 505
EcoNI CCTNNNNNAGG 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 3 cut(s) 35, 261, 344
FaeI CATG 3 cut(s) 158, 448, 751
FaiI YATR 5 cut(s) 156, 284, 446, 749, 822
FalI AAGNNNNNCTT 4 cut(s) 553, 585, 684, 716
FatI CATG 3 cut(s) 154, 444, 747
FauI CCCGC 1 cut(s) 19
FbaI TGATCA 1 cut(s) 723
FblI GTMKAC 2 cut(s) 142, 825
Fnu4HI GCNGC 2 cut(s) 96, 615
FokI GGATG 3 cut(s) 278, 309, 665
Fsp4HI GCNGC 2 cut(s) 96, 615
GluI GCNGC 2 cut(s) 96, 615
GsuI CTGGAG 4 cut(s) 19, 327, 328, 689
HaeIII GGCC 1 cut(s) 511
HgaI GACGC 1 cut(s) 620
Hin1II CATG 3 cut(s) 158, 448, 751
HinfI GANTC 5 cut(s) 302, 425, 485, 671, 735
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 3 cut(s) 143, 610, 826
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 4 cut(s) 306, 631, 668, 689
Hpy8I GTNNAC 3 cut(s) 143, 610, 826
HpyAV CCTTC 3 cut(s) 508, 689, 752
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4V TGCA 6 cut(s) 78, 154, 228, 553, 617, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 24, 181
HpyF3I CTNAG 3 cut(s) 83, 254, 798
Hsp92II CATG 3 cut(s) 158, 448, 751
Ksp22I TGATCA 1 cut(s) 723
Kzo9I GATC 6 cut(s) 268, 392, 685, 723, 770, 807
LmnI GCTCC 2 cut(s) 264, 751
Lsp1109I GCAGC 2 cut(s) 82, 601
LweI GCATC 4 cut(s) 287, 527, 540, 687
MaeIII GTNAC 1 cut(s) 624
MalI GATC 6 cut(s) 270, 394, 687, 725, 772, 809
MbiI CCGCTC 1 cut(s) 14
MboI GATC 6 cut(s) 268, 392, 685, 723, 770, 807
MfeI CAATTG 1 cut(s) 719
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 5 cut(s) 403, 465, 596, 719, 777
MlyI GAGTC 2 cut(s) 680, 744
MseI TTAA 3 cut(s) 441, 660, 759
MslI CAYNNNNRTG 2 cut(s) 159, 233
MspR9I CCNGG 3 cut(s) 37, 263, 346
MunI CAATTG 1 cut(s) 719
MvaI CCWGG 3 cut(s) 37, 263, 346
MwoI GCNNNNNNNGC 3 cut(s) 11, 24, 181
NdeII GATC 6 cut(s) 268, 392, 685, 723, 770, 807
NlaIII CATG 3 cut(s) 158, 448, 751
NlaIV GGNNCC 2 cut(s) 260, 510
NmuCI GTSAC 1 cut(s) 624
NspI RCATGY 1 cut(s) 448
OliI CACNNNNGTG 1 cut(s) 233
PciI ACATGT 1 cut(s) 444
PfeI GAWTC 3 cut(s) 302, 425, 485
PfoI TCCNGGA 2 cut(s) 261, 344
PkrI GCNGC 2 cut(s) 97, 616
PleI GAGTC 2 cut(s) 679, 743
PpsI GAGTC 2 cut(s) 679, 743
PscI ACATGT 1 cut(s) 444
PshAI GACNNNNGTC 1 cut(s) 85
Psp6I CCWGG 3 cut(s) 35, 261, 344
PspGI CCWGG 3 cut(s) 35, 261, 344
PspN4I GGNNCC 2 cut(s) 260, 510
PspPI GGNCC 1 cut(s) 509
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 2 cut(s) 312, 648
RsaNI GTAC 2 cut(s) 311, 647
RseI CAYNNNNRTG 2 cut(s) 159, 233
SaqAI TTAA 3 cut(s) 441, 660, 759
SatI GCNGC 2 cut(s) 96, 615
Sau3AI GATC 6 cut(s) 268, 392, 685, 723, 770, 807
Sau96I GGNCC 1 cut(s) 509
ScaI AGTACT 1 cut(s) 312
SchI GAGTC 2 cut(s) 680, 744
ScrFI CCNGG 3 cut(s) 37, 263, 346
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 4 cut(s) 287, 527, 540, 687
SmiMI CAYNNNNRTG 2 cut(s) 159, 233
SmlI CTYRAG 2 cut(s) 629, 701
SmoI CTYRAG 2 cut(s) 629, 701
Sse9I AATT 5 cut(s) 403, 465, 596, 719, 777
SsiI CCGC 2 cut(s) 12, 396
StyD4I CCNGG 3 cut(s) 35, 261, 344
TaaI ACNGT 1 cut(s) 478
TasI AATT 5 cut(s) 403, 465, 596, 719, 777
TatI WGTACW 2 cut(s) 310, 646
TfiI GAWTC 3 cut(s) 302, 425, 485
Tru1I TTAA 3 cut(s) 441, 660, 759
Tru9I TTAA 3 cut(s) 441, 660, 759
TseFI GTSAC 1 cut(s) 624
TseI GCWGC 2 cut(s) 95, 614
Tsp45I GTSAC 1 cut(s) 624
TspDTI ATGAA 6 cut(s) 81, 102, 171, 490, 609, 818
XagI CCTNNNNNAGG 1 cut(s) 413
XapI RAATTY 1 cut(s) 596
XceI RCATGY 1 cut(s) 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XmiI GTMKAC 2 cut(s) 142, 825
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.