Rroxscaffold_7G00188550

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000199
Physical Location & Seq
Forward (+)
28130149 .. 28130688
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188550.1

Sequence Viewer

Length: 540 bp
ATGAAAACCAAGGAAAACGTACAAGATCTTCAATCCATCATTCGAAGAAAGCGTGGAGATGAATCTGCAGTACTCAAGAGTGAAGCAAGGAAATACTTGATATCCAGGAAGACAGTGAAAAAGGCTCTCCACAAAGCTTTGGGGAACGTGAAGGGAATGGCAAACAGATCTTCGTCTTCCTGCAACAAGGATCAAGAGACTATAACCATCGTGAGCAAGCTGAGAGATGTGGAAGCAGTCACTCTCGCCATGTTTGAATCAGTTCTATCCTTCATCTCAGGGCCAAAGTCAAAGCCTTACAGCTGGTCTTTGGTTTCCAAGATGTTGCAGTCAAATAGAATAGCTTGCGCGGAAGAAACAAAAGTAAATGAATTTACAGAGGTGGATGCTGCATTGAAGTCACTCAAGAGTGTTGACAACTCACACAACCAGCTTAACAATCTGGAATCATGCATTCAAGACCAAGAAGAAGCACTTGATTGTCTATATAGGCAATTGATCAAAACAAGAGTCTCCCTTCTCAACATCCTCAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

179

Amino Acids

20.16

Weight (kDa)

9.37

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 2 - 176 7.2e-54 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 350
AciI CCGC 1 cut(s) 350
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 371
AfaI GTAC 2 cut(s) 21, 72
AgsI TTSAA 4 cut(s) 32, 257, 397, 458
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 5 cut(s) 137, 220, 303, 344, 433
AluI AGCT 5 cut(s) 137, 220, 303, 344, 433
Alw26I GTCTC 2 cut(s) 191, 517
AlwI GGATC 1 cut(s) 198
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 371
ArsI GACNNNNNNTTYG 2 cut(s) 495, 527
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 281
AsuII TTCGAA 1 cut(s) 43
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BbsI GAAGAC 2 cut(s) 116, 168
BbvI GCAGC 1 cut(s) 376
BccI CCATC 2 cut(s) 44, 215
BciT130I CCWGG 1 cut(s) 106
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 191, 517
BfaI CTAG 1 cut(s) 538
BfmI CTRYAG 1 cut(s) 66
BglII AGATCT 2 cut(s) 25, 167
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
BmcAI AGTACT 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 2 cut(s) 116, 168
Bpu14I TTCGAA 1 cut(s) 43
BpuEI CTTGAG 2 cut(s) 59, 389
BsaJI CCNNGG 1 cut(s) 9
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 391, 525
BseMII CTCAG 2 cut(s) 212, 291
BseXI GCAGC 1 cut(s) 376
Bsh1236I CGCG 1 cut(s) 350
BshFI GGCC 1 cut(s) 283
BsmAI GTCTC 2 cut(s) 191, 517
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 43
Bsp143I GATC 4 cut(s) 25, 167, 190, 498
BspACI CCGC 1 cut(s) 350
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 2 cut(s) 213, 290
BspFNI CGCG 1 cut(s) 350
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 1 cut(s) 198
BspT104I TTCGAA 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 4 cut(s) 25, 167, 190, 498
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 115
BstBI TTCGAA 1 cut(s) 43
BstC8I GCNNGC 2 cut(s) 218, 346
BstDEI CTNAG 2 cut(s) 221, 277
BstF5I GGATG 2 cut(s) 391, 525
BstFNI CGCG 1 cut(s) 350
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 4 cut(s) 28, 170, 193, 501
BstMAI GTCTC 2 cut(s) 191, 517
BstMBI GATC 4 cut(s) 25, 167, 190, 498
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 66
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 2 cut(s) 116, 168
BstX2I RGATCY 2 cut(s) 25, 167
BstYI RGATCY 2 cut(s) 25, 167
BsuRI GGCC 1 cut(s) 283
BtsCI GGATG 2 cut(s) 391, 525
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 218, 346
CfoI GCGC 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 20, 71
CviAII CATG 2 cut(s) 250, 450
CviJI RGCY 8 cut(s) 125, 137, 220, 283, 295, 303, 344, 433
CviKI_1 RGCY 8 cut(s) 125, 137, 220, 283, 295, 303, 344, 433
CviQI GTAC 2 cut(s) 20, 71
DdeI CTNAG 2 cut(s) 221, 277
DpnI GATC 4 cut(s) 27, 169, 192, 500
DpnII GATC 4 cut(s) 25, 167, 190, 498
Eco130I CCWWGG 1 cut(s) 9
Eco32I GATATC 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 104
EcoRV GATATC 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 455
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 253, 453
FaiI YATR 5 cut(s) 203, 251, 451, 487, 489
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FatI CATG 2 cut(s) 249, 449
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 2 cut(s) 398, 512
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 1 cut(s) 538
GlaI GCGC 1 cut(s) 349
GluI GCNGC 1 cut(s) 390
HaeIII GGCC 1 cut(s) 283
HhaI GCGC 1 cut(s) 350
Hin1II CATG 2 cut(s) 253, 453
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 4 cut(s) 62, 257, 446, 510
Hpy166II GTNNAC 1 cut(s) 415
Hpy188III TCNNGA 6 cut(s) 76, 194, 211, 406, 443, 458
Hpy8I GTNNAC 1 cut(s) 415
HpyAV CCTTC 3 cut(s) 145, 280, 527
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 2 cut(s) 18, 147
HpyCH4V TGCA 5 cut(s) 68, 183, 328, 392, 453
HpyF3I CTNAG 2 cut(s) 221, 277
HpySE526I ACGT 2 cut(s) 18, 147
Hsp92II CATG 2 cut(s) 253, 453
HspAI GCGC 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 4 cut(s) 25, 167, 190, 498
LpnPI CCDG 7 cut(s) 91, 118, 193, 264, 289, 428, 443
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 376
MaeI CTAG 1 cut(s) 538
MaeII ACGT 2 cut(s) 18, 147
MaeIII GTNAC 2 cut(s) 238, 399
MalI GATC 4 cut(s) 27, 169, 192, 500
MboI GATC 4 cut(s) 25, 167, 190, 498
MboII GAAGA 7 cut(s) 20, 57, 121, 162, 168, 365, 479
MfeI CAATTG 1 cut(s) 494
MflI RGATCY 2 cut(s) 25, 167
MluCI AATT 2 cut(s) 371, 494
MlyI GAGTC 1 cut(s) 519
MnlI CCTC 2 cut(s) 373, 539
Mph1103I ATGCAT 1 cut(s) 455
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 106
MunI CAATTG 1 cut(s) 494
Mva1269I GAATGC 1 cut(s) 453
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 1 cut(s) 350
NdeII GATC 4 cut(s) 25, 167, 190, 498
NlaIII CATG 2 cut(s) 253, 453
NmuCI GTSAC 2 cut(s) 238, 399
NsiI ATGCAT 1 cut(s) 455
NspV TTCGAA 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 49
PctI GAATGC 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 3 cut(s) 62, 257, 446
PfoI TCCNGGA 1 cut(s) 104
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspPI GGNCC 1 cut(s) 281
PstI CTGCAG 1 cut(s) 70
PsuI RGATCY 2 cut(s) 25, 167
PvuII CAGCTG 1 cut(s) 303
RsaI GTAC 2 cut(s) 21, 72
RsaNI GTAC 2 cut(s) 20, 71
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 4 cut(s) 25, 167, 190, 498
Sau96I GGNCC 1 cut(s) 281
ScaI AGTACT 1 cut(s) 72
SchI GAGTC 1 cut(s) 519
ScrFI CCNGG 1 cut(s) 106
SetI ASST 8 cut(s) 21, 139, 150, 222, 305, 346, 384, 435
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 43
SmlI CTYRAG 2 cut(s) 74, 404
SmoI CTYRAG 2 cut(s) 74, 404
Sse9I AATT 2 cut(s) 371, 494
SsiI CCGC 1 cut(s) 350
SspMI CTAG 1 cut(s) 538
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 2 cut(s) 21, 150
TaqI TCGA 1 cut(s) 43
TasI AATT 2 cut(s) 371, 494
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 3 cut(s) 62, 257, 446
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 2 cut(s) 238, 399
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 2 cut(s) 238, 399
TspDTI ATGAA 4 cut(s) 17, 75, 262, 384
TspRI CASTG 1 cut(s) 120
XapI RAATTY 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 538
ZrmI AGTACT 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.