Rh6AG239600

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000199
Physical Location & Seq
Forward (+)
42569397 .. 42569997
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG239600.1

Sequence Viewer

Length: 432 bp
ATGGTGAAGAAGTCAATTCACAAGGCTATGGGAAATCTGAAAGGAATGAAAAACAGATCCACGTTCTCATCCACCAACAGGGACCAAGAAACTATCGCCATTGTTAACAAGCTGAAAGATATTGAAGCAGTCTCTCTCACTATCTTCGAATCAGTGCTGTCCTTCATCTCTGGACCAAAGTCAAAGCCTAGCAGCTGGTCTTTGGTTTCCAAGATGGTGCAGTCCAAAAGAATAGCTTGTGATGAGGAAGCAAAAGTGAATGAGTTTGCAGAGGTGGATGCTGCATTGAAGTCACTCAAGAGTGCAGACAATGCACAAAACCAGCTTAGCAATCTGGAGTCATGCATTCAAGACCAAGAAGAAGGACTTGAAAGCCTATTTAGGCAATTGATCAAAACAAGGGTCTCCCTTCTCAACATCCTAAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

143

Amino Acids

15.9

Weight (kDa)

8.91

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 2 - 140 1.6e-43 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 4 cut(s) 125, 289, 350, 371
AluBI AGCT 4 cut(s) 112, 195, 236, 325
AluI AGCT 4 cut(s) 112, 195, 236, 325
Alw26I GTCTC 2 cut(s) 136, 409
AlwI GGATC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 192, 281
ArsI GACNNNNNNTTYG 2 cut(s) 387, 419
AspS9I GGNCC 2 cut(s) 82, 173
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 147
AvaII GGWCC 2 cut(s) 82, 173
BbvI GCAGC 2 cut(s) 204, 268
BccI CCATC 1 cut(s) 208
BclI TGATCA 1 cut(s) 390
BcoDI GTCTC 2 cut(s) 136, 409
BfaI CTAG 2 cut(s) 189, 430
BisI GCNGC 2 cut(s) 193, 282
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 2 cut(s) 194, 283
Bme18I GGWCC 2 cut(s) 82, 173
BmgT120I GGNCC 2 cut(s) 82, 173
BmiI GGNNCC 1 cut(s) 83
BmsI GCATC 1 cut(s) 268
BoxI GACNNNNGTC 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 356
Bpu1102I GCTNAGC 1 cut(s) 326
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 409
Bsc4I CCNNNNNNNGG 1 cut(s) 78
BseGI GGATG 3 cut(s) 68, 283, 417
BseLI CCNNNNNNNGG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 204, 268
BsgI GTGCAG 2 cut(s) 239, 324
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 2 cut(s) 136, 409
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 345
Bso31I GGTCTC 1 cut(s) 409
Bsp119I TTCGAA 1 cut(s) 147
Bsp143I GATC 2 cut(s) 56, 390
Bsp1720I GCTNAGC 1 cut(s) 326
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 147
BspTNI GGTCTC 1 cut(s) 409
BssMI GATC 2 cut(s) 56, 390
BstAPI GCANNNNNTGC 1 cut(s) 311
BstBI TTCGAA 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 326
BstF5I GGATG 3 cut(s) 68, 283, 417
BstKTI GATC 2 cut(s) 59, 393
BstMAI GTCTC 2 cut(s) 136, 409
BstMBI GATC 2 cut(s) 56, 390
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstPAI GACNNNNGTC 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 204, 268
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BtsCI GGATG 3 cut(s) 68, 283, 417
BtsIMutI CAGTG 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 82, 173
CviAII CATG 1 cut(s) 342
CviJI RGCY 7 cut(s) 26, 112, 187, 195, 236, 325, 375
CviKI_1 RGCY 7 cut(s) 26, 112, 187, 195, 236, 325, 375
DdeI CTNAG 1 cut(s) 326
DpnI GATC 2 cut(s) 58, 392
DpnII GATC 2 cut(s) 56, 390
Eco31I GGTCTC 1 cut(s) 409
Eco47I GGWCC 2 cut(s) 82, 173
EcoT22I ATGCAT 1 cut(s) 347
FaeI CATG 1 cut(s) 345
FaiI YATR 2 cut(s) 29, 343
FalI AAGNNNNNCTT 4 cut(s) 220, 252, 351, 383
FaqI GGGAC 1 cut(s) 95
FatI CATG 1 cut(s) 341
FbaI TGATCA 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 193, 282
FokI GGATG 3 cut(s) 55, 290, 404
Fsp4HI GCNGC 2 cut(s) 193, 282
FspBI CTAG 2 cut(s) 189, 430
GluI GCNGC 2 cut(s) 193, 282
GsuI CTGGAG 1 cut(s) 356
Hin1II CATG 1 cut(s) 345
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 2 cut(s) 149, 338
HpaI GTTAAC 1 cut(s) 106
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 4 cut(s) 171, 298, 335, 350
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 3 cut(s) 172, 356, 419
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 6 cut(s) 220, 269, 284, 305, 314, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 1 cut(s) 345
Ksp22I TGATCA 1 cut(s) 390
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 56, 390
LpnPI CCDG 5 cut(s) 64, 156, 181, 320, 335
Lsp1109I GCAGC 2 cut(s) 204, 268
LweI GCATC 1 cut(s) 268
MaeI CTAG 2 cut(s) 189, 430
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 291
MalI GATC 2 cut(s) 58, 392
MboI GATC 2 cut(s) 56, 390
MboII GAAGA 3 cut(s) 19, 136, 371
MfeI CAATTG 1 cut(s) 386
MflI RGATCY 1 cut(s) 56
MluCI AATT 2 cut(s) 15, 386
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 2 cut(s) 238, 265
Mph1103I ATGCAT 1 cut(s) 347
MseI TTAA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 195
MunI CAATTG 1 cut(s) 386
Mva1269I GAATGC 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 2 cut(s) 56, 390
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 291
NsiI ATGCAT 1 cut(s) 347
NspV TTCGAA 1 cut(s) 147
PctI GAATGC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 2 cut(s) 194, 283
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PshAI GACNNNNGTC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 2 cut(s) 82, 173
PsuI RGATCY 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 195
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 2 cut(s) 193, 282
Sau3AI GATC 2 cut(s) 56, 390
Sau96I GGNCC 2 cut(s) 82, 173
SchI GAGTC 1 cut(s) 347
SetI ASST 6 cut(s) 65, 114, 197, 238, 276, 327
SfaNI GCATC 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 2 cut(s) 82, 173
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 15, 386
SspMI CTAG 2 cut(s) 189, 430
TaiI ACGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 147
TasI AATT 2 cut(s) 15, 386
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 2 cut(s) 192, 281
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 2 cut(s) 62, 154
TspRI CASTG 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 82, 173
XspI CTAG 2 cut(s) 189, 430
Zsp2I ATGCAT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.