AT2G17080

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000199
Physical Location & Seq
Reverse (-)
7433183 .. 7434172
990 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17080.1

Sequence Viewer

Length: 792 bp
ATGGCAGTCTCCTTCCACGTTCGATCTAACAGCTTCCCCTCAAGATCTCACCCACAAGCTGCTCATGTGGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTCATCATCTTCCAGCTCTTCTATCTGCCAAAGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAAGCTTATCAGCCGACCTGTCACACAACAGGCTCTTTCTCAAGAGCATAACAAGAAAGCCGTTGAACAGCTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGATGCTTTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCGTGGTGATCTATCGGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATCTCTTAAGAAGTCATTCCAGAAAGTACAAAAGTCTTTGAAGGTTACACAAGCTGAAGACAACAACGATGACACTTTGGCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCTGTTTGATTCTCTCCTTAGCTACATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAACAAGAAGAAAGTTACATGTGAAGCGCAAGAAAACGAATTCACGAAGGTTGATTCCGAATTTCAATCCGAAAAGACCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAGATCTTGAAGATGGACTTGAATCACTTTCAAAGTCATTGATTAAATACAGAGTCTCATTTCTTAACATCTTAGGCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

263

Amino Acids

29.64

Weight (kDa)

6.61

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 48 - 260 1.1e-64 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 252, 265, 275, 325, 556
AcsI RAATTY 2 cut(s) 629, 650
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 1 cut(s) 429
AflII CTTAAG 1 cut(s) 407
AflIII ACRYGT 2 cut(s) 540, 608
AgsI TTSAA 9 cut(s) 155, 242, 442, 656, 673, 710, 719, 731, 741
AluBI AGCT 9 cut(s) 33, 59, 123, 181, 247, 455, 503, 537, 586
AluI AGCT 9 cut(s) 33, 59, 123, 181, 247, 455, 503, 537, 586
Alw26I GTCTC 5 cut(s) 13, 174, 326, 583, 769
AlwI GGATC 5 cut(s) 252, 265, 275, 325, 556
AoxI GGCC 2 cut(s) 81, 784
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 2 cut(s) 629, 650
Asp700I GAANNNNTTC 2 cut(s) 246, 416
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 41, 371
AxyI CCTNAGG 1 cut(s) 263
BamHI GGATCC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 46
BccI CCATC 3 cut(s) 248, 670, 716
BceAI ACGGC 1 cut(s) 221
BcoDI GTCTC 5 cut(s) 13, 174, 326, 583, 769
BfaI CTAG 1 cut(s) 695
BfrI CTTAAG 1 cut(s) 407
BglII AGATCT 3 cut(s) 44, 92, 712
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 259
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 465
BplI GAGNNNNNCTC 2 cut(s) 92, 124
Bpu10I CCTNAGC 1 cut(s) 533
BpuEI CTTGAG 3 cut(s) 25, 201, 379
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 291
Bse21I CCTNAGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 3 cut(s) 76, 301, 685
BseMII CTCAG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 2 cut(s) 83, 786
BsmAI GTCTC 5 cut(s) 13, 174, 326, 583, 769
BsmBI CGTCTC 1 cut(s) 583
BsmI GAATGC 1 cut(s) 705
BsnI GGCC 2 cut(s) 83, 786
Bso31I GGTCTC 1 cut(s) 326
Bsp143I GATC 9 cut(s) 23, 44, 92, 257, 267, 330, 361, 548, 712
BspANI GGCC 2 cut(s) 83, 786
BspCNI CTCAG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 5 cut(s) 252, 265, 275, 325, 556
BspQI GCTCTTC 1 cut(s) 130
BspTI CTTAAG 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 9 cut(s) 23, 44, 92, 257, 267, 330, 361, 548, 712
BssT1I CCWWGG 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 130
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 4 cut(s) 263, 344, 533, 781
BstF5I GGATG 3 cut(s) 76, 301, 685
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 9 cut(s) 26, 47, 95, 260, 270, 333, 364, 551, 715
BstMAI GTCTC 5 cut(s) 13, 174, 326, 583, 769
BstMBI GATC 9 cut(s) 23, 44, 92, 257, 267, 330, 361, 548, 712
BstNSI RCATGY 2 cut(s) 544, 612
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 6 cut(s) 44, 92, 257, 267, 330, 712
BstYI RGATCY 6 cut(s) 44, 92, 257, 267, 330, 712
Bsu36I CCTNAGG 1 cut(s) 263
BsuRI GGCC 2 cut(s) 83, 786
BtsCI GGATG 3 cut(s) 76, 301, 685
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 619
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 428
CviAII CATG 6 cut(s) 65, 164, 325, 541, 609, 702
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 4 cut(s) 263, 344, 533, 781
DpnI GATC 9 cut(s) 25, 46, 94, 259, 269, 332, 363, 550, 714
DpnII GATC 9 cut(s) 23, 44, 92, 257, 267, 330, 361, 548, 712
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 477
Eco81I CCTNAGG 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 629
EcoT14I CCWWGG 1 cut(s) 291
EcoT22I ATGCAT 1 cut(s) 707
ErhI CCWWGG 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 583
FaeI CATG 6 cut(s) 68, 167, 328, 544, 612, 705
FaiI YATR 7 cut(s) 66, 165, 225, 326, 542, 610, 703
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 711, 743
FatI CATG 6 cut(s) 64, 163, 324, 540, 608, 701
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 3 cut(s) 83, 308, 692
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 695
GlaI GCGC 1 cut(s) 618
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 2 cut(s) 83, 786
HhaI GCGC 1 cut(s) 619
Hin1II CATG 6 cut(s) 68, 167, 328, 544, 612, 705
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 6 cut(s) 167, 524, 644, 698, 731, 762
HphI GGTGA 2 cut(s) 41, 371
Hpy188I TCNGA 6 cut(s) 100, 307, 370, 649, 661, 690
HpyAV CCTTC 4 cut(s) 22, 161, 436, 631
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 282, 705
HpyF3I CTNAG 4 cut(s) 263, 344, 533, 781
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 6 cut(s) 68, 167, 328, 544, 612, 705
HspAI GCGC 1 cut(s) 617
Kzo9I GATC 9 cut(s) 23, 44, 92, 257, 267, 330, 361, 548, 712
LguI GCTCTTC 1 cut(s) 130
LpnPI CCDG 6 cut(s) 133, 191, 207, 250, 434, 531
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 695
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 196, 445, 604
MalI GATC 9 cut(s) 25, 46, 94, 259, 269, 332, 363, 550, 714
MboI GATC 9 cut(s) 23, 44, 92, 257, 267, 330, 361, 548, 712
MboII GAAGA 9 cut(s) 87, 108, 117, 360, 383, 470, 610, 685, 731
MflI RGATCY 6 cut(s) 44, 92, 257, 267, 330, 712
MluCI AATT 3 cut(s) 339, 629, 650
MlyI GAGTC 3 cut(s) 176, 707, 771
MnlI CCTC 5 cut(s) 49, 118, 272, 310, 403
Mph1103I ATGCAT 1 cut(s) 707
MroXI GAANNNNTTC 2 cut(s) 246, 416
MseI TTAA 4 cut(s) 389, 408, 753, 774
MslI CAYNNNNRTG 1 cut(s) 69
MspCI CTTAAG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 705
NdeII GATC 9 cut(s) 23, 44, 92, 257, 267, 330, 361, 548, 712
NlaIII CATG 6 cut(s) 68, 167, 328, 544, 612, 705
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 707
NspI RCATGY 2 cut(s) 544, 612
PciI ACATGT 2 cut(s) 540, 608
PciSI GCTCTTC 1 cut(s) 130
PctI GAATGC 1 cut(s) 705
PdmI GAANNNNTTC 2 cut(s) 246, 416
PfeI GAWTC 3 cut(s) 524, 644, 731
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 3 cut(s) 175, 706, 770
PpsI GAGTC 3 cut(s) 175, 706, 770
PscI ACATGT 2 cut(s) 540, 608
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 6 cut(s) 44, 92, 257, 267, 330, 712
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 130
SaqAI TTAA 4 cut(s) 389, 408, 753, 774
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 9 cut(s) 23, 44, 92, 257, 267, 330, 361, 548, 712
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 3 cut(s) 176, 707, 771
SfaNI GCATC 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 4 cut(s) 40, 216, 394, 407
SmoI CTYRAG 4 cut(s) 40, 216, 394, 407
Sse9I AATT 3 cut(s) 339, 629, 650
SspMI CTAG 1 cut(s) 695
StyI CCWWGG 1 cut(s) 291
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 22
TasI AATT 3 cut(s) 339, 629, 650
TatI WGTACW 1 cut(s) 427
TfiI GAWTC 3 cut(s) 524, 644, 731
Tru1I TTAA 4 cut(s) 389, 408, 753, 774
Tru9I TTAA 4 cut(s) 389, 408, 753, 774
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 326, 605
Vha464I CTTAAG 1 cut(s) 407
XapI RAATTY 2 cut(s) 629, 650
XceI RCATGY 2 cut(s) 544, 612
XmnI GAANNNNTTC 2 cut(s) 246, 416
XspI CTAG 1 cut(s) 695
Zsp2I ATGCAT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.