MD12G1141200.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000199
Physical Location & Seq
Reverse (-)
21919424 .. 21919912
489 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1141200.v1.1.491

Sequence Viewer

Length: 489 bp
ATGCGCAGAAGACGAGGAGATGACTTGAGCTTCATGACCTCTAGAAAGGATGTCAAGAAGGCGATGAACAAGGCCTTGAAGGTCAAGGAAAGCAGGTCCACAGACAAAAACAACGAGATTACTCCAGCAGCGGTCAACATGTTGAAAGAATCAAATGCAGTCTCCATAGCTGTGTTTGAAACCTTGTTGTCATTTATTGCTGTATCGAAATCAAAGTCCAACCATTGGTTCTCCAAGTTGGTGCAGCCCAAAAGAGTAGCTTGCGAGGAAGTTGAGGATACAAATGAACTTGAGAAGGTGGATGTTGCATTGAACTCTCTTATTAGTGACAAGTCAAGGAAATTTGATTACACAATCGAACTCGAGAATGTTCAATGTTTTCTCCAAGAATTGGAGGCAAAAATTCAAGATATCGAAGAAGGAATCGAGGGACTATTTAGGCGTTTAATCAAAGCCAGAGTCGCTCTTCTCAACATATTCAACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

163

Amino Acids

18.59

Weight (kDa)

8.85

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 2 - 159 1.3e-35 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 84
AccB7I CCANNNNNTGG 2 cut(s) 225, 391
AciI CCGC 1 cut(s) 131
AcsI RAATTY 2 cut(s) 341, 402
AfiI CCNNNNNNNGG 2 cut(s) 225, 391
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 7 cut(s) 79, 145, 179, 313, 374, 407, 481
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 30, 170, 260
AluI AGCT 3 cut(s) 30, 170, 260
Alw26I GTCTC 1 cut(s) 166
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 128, 244
ApoI RAATTY 2 cut(s) 341, 402
ArsI GACNNNNNNTTYG 4 cut(s) 200, 232, 444, 476
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 96
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 16
BbvI GCAGC 2 cut(s) 140, 256
BciVI GTATCC 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 84
BfuI GTATCC 1 cut(s) 271
BisI GCNGC 2 cut(s) 129, 245
BlsI GCNGC 2 cut(s) 130, 246
Bme18I GGWCC 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 108
BpuEI CTTGAG 2 cut(s) 46, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 391
BseGI GGATG 2 cut(s) 55, 307
BseLI CCNNNNNNNGG 2 cut(s) 225, 391
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 140, 256
BsgI GTGCAG 1 cut(s) 263
BshFI GGCC 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 2 cut(s) 225, 391
BsmAI GTCTC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 362
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 74
BspHI TCATGA 1 cut(s) 33
BspMI ACCTGC 1 cut(s) 84
BspQI GCTCTTC 1 cut(s) 471
Bst6I CTCTTC 1 cut(s) 471
BstC8I GCNNGC 1 cut(s) 262
BstF5I GGATG 2 cut(s) 55, 307
BstHHI GCGC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNSI RCATGY 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 140, 256
BstV2I GAAGAC 1 cut(s) 16
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 74
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 2 cut(s) 55, 307
BveI ACCTGC 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 262
CciI TCATGA 1 cut(s) 33
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 96
CviAII CATG 2 cut(s) 34, 139
CviJI RGCY 6 cut(s) 30, 74, 170, 247, 260, 455
CviKI_1 RGCY 6 cut(s) 30, 74, 170, 247, 260, 455
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco147I AGGCCT 1 cut(s) 74
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 362
EcoRV GATATC 1 cut(s) 412
FaeI CATG 2 cut(s) 37, 142
FaiI YATR 4 cut(s) 35, 140, 167, 476
FalI AAGNNNNNCTT 2 cut(s) 244, 276
FaqI GGGAC 1 cut(s) 444
FatI CATG 2 cut(s) 33, 138
Fnu4HI GCNGC 2 cut(s) 129, 245
FokI GGATG 2 cut(s) 62, 314
Fsp4HI GCNGC 2 cut(s) 129, 245
FspBI CTAG 1 cut(s) 42
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 129, 245
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 74
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 37, 142
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 3 cut(s) 149, 423, 459
Hpy166II GTNNAC 2 cut(s) 99, 136
Hpy188III TCNNGA 5 cut(s) 34, 42, 55, 364, 407
Hpy8I GTNNAC 2 cut(s) 99, 136
HpyAV CCTTC 4 cut(s) 52, 73, 289, 413
HpyCH4V TGCA 3 cut(s) 158, 244, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
Hsp92II CATG 2 cut(s) 37, 142
HspAI GCGC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 471
LpnPI CCDG 3 cut(s) 79, 138, 469
Lsp1109I GCAGC 2 cut(s) 140, 256
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 326
MboII GAAGA 3 cut(s) 21, 428, 458
MluCI AATT 3 cut(s) 341, 389, 402
MlyI GAGTC 1 cut(s) 468
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 6 cut(s) 8, 49, 259, 268, 388, 421
MseI TTAA 1 cut(s) 446
MslI CAYNNNNRTG 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 461
NlaIII CATG 2 cut(s) 37, 142
NmuCI GTSAC 1 cut(s) 326
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 362
PagI TCATGA 1 cut(s) 33
PceI AGGCCT 1 cut(s) 74
PciI ACATGT 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 471
PfeI GAWTC 2 cut(s) 149, 423
PflMI CCANNNNNTGG 2 cut(s) 225, 391
PkrI GCNGC 2 cut(s) 130, 246
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
PscI ACATGT 1 cut(s) 138
PspPI GGNCC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 2 cut(s) 129, 245
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 1 cut(s) 468
SetI ASST 8 cut(s) 32, 41, 84, 98, 172, 185, 262, 300
Sfr274I CTCGAG 1 cut(s) 362
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 3 cut(s) 25, 290, 362
SmoI CTYRAG 3 cut(s) 25, 290, 362
Sse9I AATT 3 cut(s) 341, 389, 402
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 1 cut(s) 131
SspMI CTAG 1 cut(s) 42
StuI AGGCCT 1 cut(s) 74
TaqI TCGA 5 cut(s) 206, 357, 363, 414, 426
TasI AATT 3 cut(s) 341, 389, 402
TfiI GAWTC 2 cut(s) 149, 423
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 2 cut(s) 128, 244
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 22, 80, 300
Van91I CCANNNNNTGG 2 cut(s) 225, 391
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 2 cut(s) 341, 402
XbaI TCTAGA 1 cut(s) 41
XceI RCATGY 1 cut(s) 142
XhoI CTCGAG 1 cut(s) 362
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.