Prupe.8G175800_v2.0.a1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000199
Physical Location & Seq
Forward (+)
17812285 .. 17813130
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G175800.1

Sequence Viewer

Length: 780 bp
ATGGCTTTCCACACTCGCTCTAACAGCTTCCCTTCAAGGCCGCACCCAATCCTTCAAGAAGTTGAAGAACATTTGTGTGGATTGAGGTCTTCTGAGGCCACCTCCACGTCTTCATCATCATCAACAAGCCACAAACTAAGTGGCCTCCACGAATTGTATGATTGTGTTGATAGGTTGCTTCAGTTGCCCCTCACTCAACAGGCCTTAGCCCAAGAGCAGAATGAGAAATTGGCTAATGAGATATTAGATGGCTCCGTCAGACTCTTGGATGTTTGCAGCAGTGCCAAGGATGTCATCCTGCAAACCAAGGAATGCGTAAGGAAATACTTAACCTCTAGGAAGATGGTGAAAAAGACAATCAACAAGGCTGTGGGTAGTTTGAAGGCAATAGCAAACAAATTCGCTTCCTCTTCCCTCAACAAGGATCATGAGAAGTTGAGAGAAGTAGAAGCAGTCACTCTTGCAGTGTTTGAGTCACTTTTGTCCTGCATCTCTGGGCCAAAATCAAAGACAAGCAGCTGGTCATTGGTCTCCAAGATAATGCAATCAAAAAAAGTTGCTTGTGAGGAAGAAGCAGAAGCAAATGAGTTTGCACAAGTGGATGCTGCATTGAACTCCCTCATTGGACACAAGACAAGCAAATCTCAACACCAAAATGTCGATAATGTGCAGAACCAGCTTAACAAACTGGAGGCATGCATTCAAGACCAAGAAGAAGGACTTGAGTGCCTTTTTAGGCAATTGATCAAAACAAGAGTCTCTTCTCAACATCTTAAACCA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

260

Amino Acids

28.83

Weight (kDa)

8.08

Isoelectric Point (pI)

56.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AclWI GGATC 1 cut(s) 432
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 6 cut(s) 36, 56, 65, 382, 613, 704
AjiI CACGTC 1 cut(s) 108
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 27, 519, 679
AluI AGCT 3 cut(s) 27, 519, 679
Alw26I GTCTC 2 cut(s) 535, 763
AlwI GGATC 1 cut(s) 432
AoxI GGCC 5 cut(s) 38, 96, 142, 201, 497
ApeKI GCWGC 3 cut(s) 276, 516, 605
ApoI RAATTY 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 741, 773
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 358
BbsI GAAGAC 2 cut(s) 81, 102
BbvI GCAGC 3 cut(s) 288, 528, 592
BccI CCATC 2 cut(s) 242, 337
BclI TGATCA 1 cut(s) 744
BcoDI GTCTC 2 cut(s) 535, 763
BfaI CTAG 1 cut(s) 336
BisI GCNGC 4 cut(s) 41, 277, 517, 606
BlsI GCNGC 4 cut(s) 42, 278, 518, 607
BmgBI CACGTC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 1 cut(s) 253
BmsI GCATC 2 cut(s) 498, 592
BpiI GAAGAC 2 cut(s) 81, 102
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpmI CTGGAG 1 cut(s) 710
Bpu10I CCTNAGC 1 cut(s) 205
BpuEI CTTGAG 1 cut(s) 743
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 2 cut(s) 285, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 693
BseDI CCNNGG 2 cut(s) 285, 306
BseGI GGATG 4 cut(s) 274, 294, 295, 607
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 693
BseXI GCAGC 3 cut(s) 288, 528, 592
BsgI GTGCAG 1 cut(s) 689
BshFI GGCC 5 cut(s) 40, 98, 144, 203, 499
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 2 cut(s) 535, 763
BsmI GAATGC 2 cut(s) 317, 699
BsnI GGCC 5 cut(s) 40, 98, 144, 203, 499
Bso31I GGTCTC 1 cut(s) 535
Bsp143I GATC 2 cut(s) 424, 744
BspACI CCGC 1 cut(s) 41
BspANI GGCC 5 cut(s) 40, 98, 144, 203, 499
BspCNI CTCAG 1 cut(s) 85
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 432
BspTNI GGTCTC 1 cut(s) 535
BsrI ACTGG 1 cut(s) 693
BssECI CCNNGG 2 cut(s) 285, 306
BssMI GATC 2 cut(s) 424, 744
BssT1I CCWWGG 2 cut(s) 285, 306
Bst6I CTCTTC 2 cut(s) 415, 766
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 3 cut(s) 93, 137, 205
BstENI CCTNNNNNAGG 1 cut(s) 419
BstF5I GGATG 4 cut(s) 274, 294, 295, 607
BstKTI GATC 2 cut(s) 427, 747
BstMAI GTCTC 2 cut(s) 535, 763
BstMBI GATC 2 cut(s) 424, 744
BstMWI GCNNNNNNNGC 3 cut(s) 24, 184, 676
BstNSI RCATGY 1 cut(s) 699
BstV1I GCAGC 3 cut(s) 288, 528, 592
BstV2I GAAGAC 2 cut(s) 81, 102
BsuRI GGCC 5 cut(s) 40, 98, 144, 203, 499
BtrI CACGTC 1 cut(s) 108
BtsCI GGATG 4 cut(s) 274, 294, 295, 607
BtsI GCAGTG 2 cut(s) 286, 471
BtsIMutI CAGTG 2 cut(s) 286, 471
Cac8I GCNNGC 1 cut(s) 697
CciI TCATGA 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 497
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviAII CATG 2 cut(s) 428, 696
DdeI CTNAG 3 cut(s) 93, 137, 205
DpnI GATC 2 cut(s) 426, 746
DpnII GATC 2 cut(s) 424, 744
Eam1104I CTCTTC 2 cut(s) 415, 766
EarI CTCTTC 2 cut(s) 415, 766
Eco130I CCWWGG 2 cut(s) 285, 306
Eco147I AGGCCT 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoT14I CCWWGG 2 cut(s) 285, 306
EcoT22I ATGCAT 1 cut(s) 701
ErhI CCWWGG 2 cut(s) 285, 306
FaeI CATG 2 cut(s) 431, 699
FaiI YATR 3 cut(s) 159, 429, 697
FalI AAGNNNNNCTT 4 cut(s) 705, 737, 745, 777
FatI CATG 2 cut(s) 427, 695
FbaI TGATCA 1 cut(s) 744
Fnu4HI GCNGC 4 cut(s) 41, 277, 517, 606
FokI GGATG 4 cut(s) 281, 281, 302, 614
Fsp4HI GCNGC 4 cut(s) 41, 277, 517, 606
FspBI CTAG 1 cut(s) 336
GluI GCNGC 4 cut(s) 41, 277, 517, 606
GsuI CTGGAG 1 cut(s) 710
HaeIII GGCC 5 cut(s) 40, 98, 144, 203, 499
Hin1II CATG 2 cut(s) 431, 699
HinfI GANTC 3 cut(s) 261, 473, 756
HphI GGTGA 1 cut(s) 358
Hpy188I TCNGA 2 cut(s) 94, 260
Hpy188III TCNNGA 3 cut(s) 56, 428, 704
HpyAV CCTTC 4 cut(s) 42, 62, 376, 710
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 9 cut(s) 276, 301, 464, 489, 544, 593, 608, 670, 699
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 184, 676
HpyF3I CTNAG 3 cut(s) 93, 137, 205
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 2 cut(s) 431, 699
Ksp22I TGATCA 1 cut(s) 744
Kzo9I GATC 2 cut(s) 424, 744
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 7 cut(s) 185, 311, 480, 499, 505, 674, 689
Lsp1109I GCAGC 3 cut(s) 288, 528, 592
LweI GCATC 2 cut(s) 498, 592
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 2 cut(s) 454, 474
MalI GATC 2 cut(s) 426, 746
MboI GATC 2 cut(s) 424, 744
MboII GAAGA 8 cut(s) 77, 81, 102, 352, 402, 581, 725, 753
MfeI CAATTG 1 cut(s) 740
MluCI AATT 4 cut(s) 152, 227, 398, 740
MlyI GAGTC 3 cut(s) 255, 482, 765
Mph1103I ATGCAT 1 cut(s) 701
MseI TTAA 3 cut(s) 329, 681, 774
MslI CAYNNNNRTG 2 cut(s) 75, 654
MspA1I CMGCKG 1 cut(s) 519
MunI CAATTG 1 cut(s) 740
Mva1269I GAATGC 2 cut(s) 317, 699
MwoI GCNNNNNNNGC 3 cut(s) 24, 184, 676
NdeII GATC 2 cut(s) 424, 744
NlaIII CATG 2 cut(s) 431, 699
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 2 cut(s) 454, 474
NsiI ATGCAT 1 cut(s) 701
NspI RCATGY 1 cut(s) 699
PaeI GCATGC 1 cut(s) 699
PagI TCATGA 1 cut(s) 427
PceI AGGCCT 1 cut(s) 203
PctI GAATGC 2 cut(s) 317, 699
PkrI GCNGC 4 cut(s) 42, 278, 518, 607
PleI GAGTC 3 cut(s) 255, 481, 764
PpsI GAGTC 3 cut(s) 255, 481, 764
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 497
PvuII CAGCTG 1 cut(s) 519
RseI CAYNNNNRTG 2 cut(s) 75, 654
SaqAI TTAA 3 cut(s) 329, 681, 774
SatI GCNGC 4 cut(s) 41, 277, 517, 606
Sau3AI GATC 2 cut(s) 424, 744
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 3 cut(s) 255, 482, 765
SetI ASST 8 cut(s) 29, 89, 104, 110, 176, 335, 521, 681
SfaNI GCATC 2 cut(s) 498, 592
SmiMI CAYNNNNRTG 2 cut(s) 75, 654
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
SphI GCATGC 1 cut(s) 699
Sse9I AATT 4 cut(s) 152, 227, 398, 740
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 336
StuI AGGCCT 1 cut(s) 203
StyI CCWWGG 2 cut(s) 285, 306
TaiI ACGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 660
TasI AATT 4 cut(s) 152, 227, 398, 740
TauI GCSGC 1 cut(s) 43
Tru1I TTAA 3 cut(s) 329, 681, 774
Tru9I TTAA 3 cut(s) 329, 681, 774
TscAI CASTG 2 cut(s) 286, 471
TseFI GTSAC 2 cut(s) 454, 474
TseI GCWGC 3 cut(s) 276, 516, 605
Tsp45I GTSAC 2 cut(s) 454, 474
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 2 cut(s) 286, 471
XagI CCTNNNNNAGG 1 cut(s) 419
XapI RAATTY 1 cut(s) 398
XceI RCATGY 1 cut(s) 699
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XspI CTAG 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.