Rh6DG235100

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000199
Physical Location & Seq
Reverse (-)
41938977 .. 41939594
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG235100.1

Sequence Viewer

Length: 618 bp
ATGGCAGCCTCTCCTTTAAACCTAAGATCACATAACCATACTCGGTCAAACAGCTTGCCATCAACATCACACCCCTTTGTTACTGAATTTGACGAGCATCTGTGCAGATTAAAAGCTTTAGAATCATCATCATCCATAAGCCACAAACTAAGTGGCCTTCAAGATATACATGACTGCGCGGAAAAGTTTCTTCTTTTGCCGCTGAACCAACAAGCCTTGAAACAAGAGTGCGGAGACACATGGATCAATCAACTACTTGATGGATCTTCAAGGCTCCTGGATGTGTGTGGCATCATAAAGGATGCTTTGCTGCAAACAAAGGAATGCACACATGAACTTCGATCGATTAGGAGCAGAAGACGGGGAGTTGACACGAGCTTTATGAGTGAGGTTTCAAAATACCTTACCTGTAGGAAGGATGTCAAGAAGGCAATCAACAAAGCCTCAAAGCTCAGAGACAGTAAGAGCACAGACAAAACTCATGAGACTCCAGCCATTGTCAAGATGTTGAAAGAGTTAGATGCAGTCACCTCTGCTGTTTTTGAATCCTTGTTTTCCTTTATAGCTAGTTCAAATTTGAAATCAAAGTCAAGCACTTGGTCCTTAGTTTCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

205

Amino Acids

22.91

Weight (kDa)

9.15

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 49 - 205 1.4e-46 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 179
AciI CCGC 3 cut(s) 179, 200, 231
AclWI GGATC 2 cut(s) 251, 271
AcsI RAATTY 2 cut(s) 86, 574
AgsI TTSAA 9 cut(s) 161, 220, 270, 396, 511, 545, 573, 580, 612
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 5 cut(s) 54, 116, 378, 451, 566
AluI AGCT 5 cut(s) 54, 116, 378, 451, 566
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 3 cut(s) 228, 450, 479
AlwI GGATC 2 cut(s) 251, 271
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 5, 310
ApoI RAATTY 2 cut(s) 86, 574
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 600
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 1 cut(s) 600
BauI CACGAG 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 2 cut(s) 17, 297
BccI CCATC 2 cut(s) 67, 254
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 3 cut(s) 228, 450, 479
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 409
BisI GCNGC 3 cut(s) 6, 200, 311
BlsI GCNGC 3 cut(s) 7, 201, 312
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 600
BmgT120I GGNCC 1 cut(s) 600
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 4 cut(s) 106, 292, 300, 511
BpiI GAAGAC 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 474
Bsa29I ATCGAT 1 cut(s) 344
BseBI CCWGG 1 cut(s) 278
BseCI ATCGAT 1 cut(s) 344
BseGI GGATG 4 cut(s) 131, 286, 307, 424
BseMII CTCAG 1 cut(s) 466
BseXI GCAGC 2 cut(s) 17, 297
BsgI GTGCAG 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 344
BshFI GGCC 1 cut(s) 156
BshVI ATCGAT 1 cut(s) 344
BsiEI CGRYCG 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 470
BsmAI GTCTC 3 cut(s) 228, 450, 479
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 4 cut(s) 26, 243, 263, 341
BspACI CCGC 3 cut(s) 179, 200, 231
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 465
BspDI ATCGAT 1 cut(s) 344
BspFNI CGCG 1 cut(s) 179
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 1 cut(s) 275
BspPI GGATC 2 cut(s) 251, 271
BssMI GATC 4 cut(s) 26, 243, 263, 341
BssSI CACGAG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 4 cut(s) 23, 149, 452, 604
BstF5I GGATG 4 cut(s) 131, 286, 307, 424
BstFNI CGCG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 4 cut(s) 29, 246, 266, 344
BstMAI GTCTC 3 cut(s) 228, 450, 479
BstMBI GATC 4 cut(s) 26, 243, 263, 341
BstMCI CGRYCG 1 cut(s) 344
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 409
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 17, 297
BstV2I GAAGAC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
Bsu15I ATCGAT 1 cut(s) 344
BsuRI GGCC 1 cut(s) 156
BsuTUI ATCGAT 1 cut(s) 344
BtsCI GGATG 4 cut(s) 131, 286, 307, 424
Cac8I GCNNGC 1 cut(s) 56
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 600
ClaI ATCGAT 1 cut(s) 344
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 4 cut(s) 170, 240, 332, 482
DdeI CTNAG 4 cut(s) 23, 149, 452, 604
DpnI GATC 4 cut(s) 28, 245, 265, 343
DpnII GATC 4 cut(s) 26, 243, 263, 341
DraI TTTAAA 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 600
EcoRII CCWGG 1 cut(s) 276
FaeI CATG 4 cut(s) 173, 243, 335, 485
FatI CATG 4 cut(s) 169, 239, 331, 481
Fnu4HI GCNGC 3 cut(s) 6, 200, 311
FokI GGATG 4 cut(s) 118, 293, 314, 431
Fsp4HI GCNGC 3 cut(s) 6, 200, 311
FspBI CTAG 1 cut(s) 567
GlaI GCGC 1 cut(s) 178
GluI GCNGC 3 cut(s) 6, 200, 311
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 1 cut(s) 156
HhaI GCGC 1 cut(s) 179
Hin1II CATG 4 cut(s) 173, 243, 335, 485
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 3 cut(s) 122, 487, 545
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 455
Hpy188III TCNNGA 4 cut(s) 161, 424, 482, 502
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 3 cut(s) 167, 409, 421
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4V TGCA 4 cut(s) 105, 313, 327, 524
HpyF3I CTNAG 4 cut(s) 23, 149, 452, 604
Hsp92II CATG 4 cut(s) 173, 243, 335, 485
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 4 cut(s) 26, 243, 263, 341
LmnI GCTCC 2 cut(s) 279, 351
LpnPI CCDG 4 cut(s) 263, 290, 421, 504
Lsp1109I GCAGC 2 cut(s) 17, 297
LweI GCATC 4 cut(s) 106, 292, 300, 511
MaeI CTAG 1 cut(s) 567
MaeIII GTNAC 2 cut(s) 79, 526
MalI GATC 4 cut(s) 28, 245, 265, 343
MboI GATC 4 cut(s) 26, 243, 263, 341
MboII GAAGA 3 cut(s) 182, 258, 369
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 2 cut(s) 86, 574
MlyI GAGTC 1 cut(s) 481
MnlI CCTC 4 cut(s) 19, 382, 454, 541
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 2 cut(s) 17, 110
MspA1I CMGCKG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 179
NdeII GATC 4 cut(s) 26, 243, 263, 341
NlaIII CATG 4 cut(s) 173, 243, 335, 485
NlaIV GGNNCC 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 526
PagI TCATGA 1 cut(s) 481
PctI GAATGC 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 122, 545
PfoI TCCNGGA 1 cut(s) 276
PkrI GCNGC 3 cut(s) 7, 201, 312
Ple19I CGATCG 1 cut(s) 344
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 600
PsuI RGATCY 1 cut(s) 263
PvuI CGATCG 1 cut(s) 344
SaqAI TTAA 2 cut(s) 17, 110
SatI GCNGC 3 cut(s) 6, 200, 311
Sau3AI GATC 4 cut(s) 26, 243, 263, 341
Sau96I GGNCC 1 cut(s) 600
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 1 cut(s) 470
SfaNI GCATC 4 cut(s) 106, 292, 300, 511
SfcI CTRYAG 1 cut(s) 409
SinI GGWCC 1 cut(s) 600
Sse9I AATT 2 cut(s) 86, 574
SsiI CCGC 3 cut(s) 179, 200, 231
SspMI CTAG 1 cut(s) 567
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 461
TaqI TCGA 2 cut(s) 340, 344
TaqII GACCGA 1 cut(s) 33
TasI AATT 2 cut(s) 86, 574
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 2 cut(s) 122, 545
Tru1I TTAA 2 cut(s) 17, 110
Tru9I TTAA 2 cut(s) 17, 110
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 2 cut(s) 5, 310
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 600
XapI RAATTY 2 cut(s) 86, 574
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.