FvH4_2g16270

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000199
Physical Location & Seq
Forward (+)
14209333 .. 14210314
982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16270.t1

Sequence Viewer

Length: 825 bp
ATGGCTTACCACACTCGCTCTAACAGCTTTCCCTCAGGGCCACACCCCATCATTCAAGAGGTTGATGAACATTTGTGCAGATTGAGGTCTTCAGAAGCCACATCCACATCTTCATCATCAATAAGACACCAACTAAGTGGTCTCAAGGATTTGCATGATTGTGTTGATAGGTTGGTTCAATTACCACTCACCCAACAATCCTTGTCACAAGAGAAGAATCAGAAATGGACTAGTGAGCTATTAGATGGATCTCTTAGGCTCTTGGATGTTTGTGGCATTGCCAAGGATTCTCTATTGCAAACCAAAGAGTACATTCAAGACCTTCAATCGATCATTCGAAGAAGGGGTGGAGAAGAATCTGGTGTCCTCACAAGTGAGGTTAGGAAATACTTAACCTCAAGGAAGATGATGAAGAAGACAATCCAAAAGGCTTTGGTGAATCTGAAGGCAAACCGATCCACTTTCTCTTCACTCGACAACAACCAAGAGACTATCGCTGTTGCTAGCAAGCTGAGAGATATTGAAGCAGTCACTCTCACAGTGCTCCAATCAGTCCTCTCCTTCATCTCTGGGCCAAAGTCGAAGCCTAGCAGCTGGTCTTTGGTTTCCAAGGTGGTGCAGTCCAAAAGAATAGCTTGTGAAGAAGCAAAAGTAAATGAATTTGCAGAGGTGGATGCTGCATTTAAGTCAATCAAGAATGCAAATGCACAGAACCAGCTTAGCAATCTGGAGTCATGCATTCAAGACCAATTAGAAGGACTCCAGTGTCTATTTAGGCAACTGATTAAAACTAGAGTCTCCCTTCTCAATATTCTCAACCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

275

Amino Acids

30.65

Weight (kDa)

9.11

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 45 - 271 1.1e-81 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 765
AclWI GGATC 2 cut(s) 256, 450
AcsI RAATTY 1 cut(s) 659
AcuI CTGAAG 2 cut(s) 75, 464
AfaI GTAC 1 cut(s) 311
AgsI TTSAA 6 cut(s) 56, 179, 317, 326, 524, 743
AhlI ACTAGT 1 cut(s) 230
AluBI AGCT 6 cut(s) 27, 238, 511, 594, 635, 718
AluI AGCT 6 cut(s) 27, 238, 511, 594, 635, 718
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 3 cut(s) 146, 482, 802
AlwI GGATC 2 cut(s) 256, 450
AoxI GGCC 2 cut(s) 38, 572
ApeKI GCWGC 2 cut(s) 591, 677
ApoI RAATTY 1 cut(s) 659
AspS9I GGNCC 2 cut(s) 38, 572
AsuHPI GGTGA 2 cut(s) 181, 448
AsuII TTCGAA 1 cut(s) 337
AsuNHI GCTAGC 1 cut(s) 503
AxyI CCTNAGG 1 cut(s) 34
BbsI GAAGAC 2 cut(s) 81, 422
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 2 cut(s) 603, 664
BccI CCATC 2 cut(s) 56, 239
BcoDI GTCTC 3 cut(s) 146, 482, 802
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 4 cut(s) 231, 504, 588, 792
BisI GCNGC 2 cut(s) 592, 678
BlpI GCTNAGC 1 cut(s) 719
BlsI GCNGC 2 cut(s) 593, 679
BmgT120I GGNCC 2 cut(s) 38, 572
BmsI GCATC 1 cut(s) 664
BmtI GCTAGC 1 cut(s) 507
BpiI GAAGAC 2 cut(s) 81, 422
BpmI CTGGAG 2 cut(s) 746, 749
Bpu1102I GCTNAGC 1 cut(s) 719
Bpu14I TTCGAA 1 cut(s) 337
BpuEI CTTGAG 2 cut(s) 128, 382
Bsa29I ATCGAT 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 282, 609
Bse1I ACTGG 1 cut(s) 763
Bse21I CCTNAGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 276
BseCI ATCGAT 1 cut(s) 329
BseDI CCNNGG 2 cut(s) 282, 609
BseGI GGATG 3 cut(s) 101, 271, 679
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 48, 503
BseNI ACTGG 1 cut(s) 763
BseXI GCAGC 2 cut(s) 603, 664
BsgI GTGCAG 2 cut(s) 97, 638
BshFI GGCC 2 cut(s) 40, 574
BshVI ATCGAT 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 546
BsmAI GTCTC 3 cut(s) 146, 482, 802
BsmI GAATGC 2 cut(s) 703, 738
BsnI GGCC 2 cut(s) 40, 574
Bso31I GGTCTC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 3 cut(s) 248, 330, 455
Bsp1720I GCTNAGC 1 cut(s) 719
BspANI GGCC 2 cut(s) 40, 574
BspCNI CTCAG 2 cut(s) 47, 504
BspDI ATCGAT 1 cut(s) 329
BspOI GCTAGC 1 cut(s) 507
BspPI GGATC 2 cut(s) 256, 450
BspT104I TTCGAA 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 1 cut(s) 763
BssECI CCNNGG 2 cut(s) 282, 609
BssMI GATC 3 cut(s) 248, 330, 455
BssT1I CCWWGG 2 cut(s) 282, 609
Bst4CI ACNGT 1 cut(s) 541
Bst6I CTCTTC 1 cut(s) 472
BstBI TTCGAA 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 505, 509
BstDEI CTNAG 5 cut(s) 34, 134, 254, 512, 719
BstF5I GGATG 3 cut(s) 101, 271, 679
BstKTI GATC 3 cut(s) 251, 333, 458
BstMAI GTCTC 3 cut(s) 146, 482, 802
BstMBI GATC 3 cut(s) 248, 330, 455
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 603, 664
BstV2I GAAGAC 2 cut(s) 81, 422
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 1 cut(s) 137
BstYI RGATCY 1 cut(s) 248
Bsu15I ATCGAT 1 cut(s) 329
Bsu36I CCTNAGG 1 cut(s) 34
BsuRI GGCC 2 cut(s) 40, 574
BsuTUI ATCGAT 1 cut(s) 329
BtsCI GGATG 3 cut(s) 101, 271, 679
BtsIMutI CAGTG 2 cut(s) 546, 770
Cac8I GCNNGC 2 cut(s) 505, 509
Cfr13I GGNCC 2 cut(s) 38, 572
ClaI ATCGAT 1 cut(s) 329
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 155, 735
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 5 cut(s) 34, 134, 254, 512, 719
DpnI GATC 3 cut(s) 250, 332, 457
DpnII GATC 3 cut(s) 248, 330, 455
DrdI GACNNNNNNGTC 1 cut(s) 765
DseDI GACNNNNNNGTC 1 cut(s) 765
Eam1104I CTCTTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 472
Eco130I CCWWGG 2 cut(s) 282, 609
Eco31I GGTCTC 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 75, 464
Eco81I CCTNAGG 1 cut(s) 34
EcoT14I CCWWGG 2 cut(s) 282, 609
EcoT22I ATGCAT 1 cut(s) 740
ErhI CCWWGG 2 cut(s) 282, 609
FaeI CATG 2 cut(s) 158, 738
FaiI YATR 2 cut(s) 156, 736
FalI AAGNNNNNCTT 2 cut(s) 619, 651
FatI CATG 2 cut(s) 154, 734
Fnu4HI GCNGC 2 cut(s) 592, 678
FokI GGATG 3 cut(s) 88, 278, 686
Fsp4HI GCNGC 2 cut(s) 592, 678
FspBI CTAG 4 cut(s) 231, 504, 588, 792
GluI GCNGC 2 cut(s) 592, 678
GsuI CTGGAG 2 cut(s) 746, 749
HaeIII GGCC 2 cut(s) 40, 574
Hin1II CATG 2 cut(s) 158, 738
HinfI GANTC 7 cut(s) 217, 287, 356, 439, 731, 759, 795
HphI GGTGA 2 cut(s) 181, 448
Hpy188I TCNGA 3 cut(s) 94, 222, 444
Hpy188III TCNNGA 5 cut(s) 56, 317, 694, 728, 743
HpyAV CCTTC 6 cut(s) 332, 336, 439, 571, 749, 812
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4V TGCA 9 cut(s) 78, 154, 298, 619, 665, 680, 701, 707, 738
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 5 cut(s) 34, 134, 254, 512, 719
Hsp92II CATG 2 cut(s) 158, 738
Kzo9I GATC 3 cut(s) 248, 330, 455
LmnI GCTCC 1 cut(s) 549
LpnPI CCDG 7 cut(s) 21, 345, 555, 580, 713, 728, 776
Lsp1109I GCAGC 2 cut(s) 603, 664
LweI GCATC 1 cut(s) 664
MaeI CTAG 4 cut(s) 231, 504, 588, 792
MaeIII GTNAC 2 cut(s) 204, 529
MalI GATC 3 cut(s) 250, 332, 457
MboI GATC 3 cut(s) 248, 330, 455
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 3 cut(s) 179, 659, 749
MlyI GAGTC 3 cut(s) 740, 753, 804
MnlI CCTC 8 cut(s) 43, 52, 78, 370, 377, 406, 566, 661
Mph1103I ATGCAT 1 cut(s) 740
MseI TTAA 3 cut(s) 392, 684, 786
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 594
Mva1269I GAATGC 2 cut(s) 703, 738
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 3 cut(s) 248, 330, 455
NheI GCTAGC 1 cut(s) 503
NlaIII CATG 2 cut(s) 158, 738
NmuCI GTSAC 2 cut(s) 204, 529
NsiI ATGCAT 1 cut(s) 740
NspV TTCGAA 1 cut(s) 337
PctI GAATGC 2 cut(s) 703, 738
PfeI GAWTC 4 cut(s) 217, 287, 356, 439
PkrI GCNGC 2 cut(s) 593, 679
PleI GAGTC 3 cut(s) 739, 753, 803
PpsI GAGTC 3 cut(s) 739, 753, 803
PspPI GGNCC 2 cut(s) 38, 572
PsuI RGATCY 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 594
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 3 cut(s) 392, 684, 786
SatI GCNGC 2 cut(s) 592, 678
Sau3AI GATC 3 cut(s) 248, 330, 455
Sau96I GGNCC 2 cut(s) 38, 572
SchI GAGTC 3 cut(s) 740, 753, 804
SduI GDGCHC 1 cut(s) 546
SfaNI GCATC 1 cut(s) 664
SfuI TTCGAA 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 143, 397
SmoI CTYRAG 2 cut(s) 143, 397
SpeI ACTAGT 1 cut(s) 230
Sse9I AATT 3 cut(s) 179, 659, 749
SspI AATATT 1 cut(s) 811
SspMI CTAG 4 cut(s) 231, 504, 588, 792
StyI CCWWGG 2 cut(s) 282, 609
TaaI ACNGT 1 cut(s) 541
TaqI TCGA 4 cut(s) 329, 337, 474, 581
TasI AATT 3 cut(s) 179, 659, 749
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 4 cut(s) 217, 287, 356, 439
Tru1I TTAA 3 cut(s) 392, 684, 786
Tru9I TTAA 3 cut(s) 392, 684, 786
TscAI CASTG 2 cut(s) 546, 770
TseFI GTSAC 2 cut(s) 204, 529
TseI GCWGC 2 cut(s) 591, 677
Tsp45I GTSAC 2 cut(s) 204, 529
TspDTI ATGAA 5 cut(s) 81, 102, 425, 553, 672
TspRI CASTG 2 cut(s) 546, 770
XapI RAATTY 1 cut(s) 659
XspI CTAG 4 cut(s) 231, 504, 588, 792
Zsp2I ATGCAT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.