Rh6AG237900

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000199
Physical Location & Seq
Reverse (-)
42318549 .. 42319169
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG237900.1

Sequence Viewer

Length: 621 bp
ATGGCTTACCACACTCGCTCTAACAGCTTCCCCTCCAGGTCACACCCTCTCATTCAAGAAGTTGATGAACAATTGTGCAGATTGACGTCTTTCGAAGCCACCTCCACATCATCATCATCAATAAGTCACCAACTAAATTGTCTGCAAGACTTGCATGATTGTGTTGATATATTGCTTCAATTGCCACTCACCCAACAAGCCTTAGCCCAAGAGAAGCATGAAAAATGGGCTAATGAACTATTAGATGGCTCTCTCAGGCTCTTGGATATTTGCAGCACTGCCAAAGATGCCATGTTGCCAACCAAGGAATGCGTTCAGAACCTTCAGTCAATCGTCCGAAGAAGAGGAGGAGGAGAATCTGATGTACTCGCAAGTGAAGTTAGGAAATACTTAACCTCCAGGAAGATGGTGAAAGAGTCACTCCACAAGGCTATGGGGAATTTGAAGGAAATGGAAAACAAATCCAATTTCTATTCCCTCAACAAGGACCAAGAGACAGTCGCCATTATTAGCAAGCTGAGAGAAGTTGAAGCAGTCACTCGAACAGTGTTTGAACCAATATTGTCCTTCATCTCTGGGCCAAAGGTATCAAGCAGCTGGTCATTATTATATCCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

206

Amino Acids

23.27

Weight (kDa)

7.01

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 45 - 202 2.3e-58 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 89
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 5 cut(s) 56, 179, 445, 530, 554
AjnI CCWGG 2 cut(s) 35, 398
AluBI AGCT 3 cut(s) 27, 517, 597
AluI AGCT 3 cut(s) 27, 517, 597
Alw26I GTCTC 1 cut(s) 488
AoxI GGCC 1 cut(s) 578
ApeKI GCWGC 2 cut(s) 273, 594
ApoI RAATTY 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 312
AspS9I GGNCC 2 cut(s) 487, 578
AsuHPI GGTGA 3 cut(s) 119, 181, 421
AsuII TTCGAA 1 cut(s) 93
AvaII GGWCC 1 cut(s) 487
BbvI GCAGC 2 cut(s) 285, 606
BccI CCATC 2 cut(s) 239, 400
BciT130I CCWGG 2 cut(s) 37, 400
BcoDI GTCTC 1 cut(s) 488
BisI GCNGC 2 cut(s) 274, 595
BlsI GCNGC 2 cut(s) 275, 596
Bme1390I CCNGG 2 cut(s) 37, 400
Bme18I GGWCC 1 cut(s) 487
BmgT120I GGNCC 2 cut(s) 487, 578
BmrFI CCNGG 2 cut(s) 37, 400
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 2 cut(s) 19, 382
Bpu10I CCTNAGC 1 cut(s) 202
Bpu14I TTCGAA 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 1 cut(s) 484
BseBI CCWGG 2 cut(s) 37, 400
BseDI CCNNGG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 268, 509
BseRI GAGGAG 3 cut(s) 360, 363, 366
BseXI GCAGC 2 cut(s) 285, 606
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 1 cut(s) 580
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 1 cut(s) 488
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 1 cut(s) 580
Bsp119I TTCGAA 1 cut(s) 93
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 2 cut(s) 267, 510
BspT104I TTCGAA 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 303
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 2 cut(s) 37, 400
Bst4CI ACNGT 2 cut(s) 499, 547
Bst6I CTCTTC 1 cut(s) 337
BstACI GRCGYC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 151
BstBI TTCGAA 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 515
BstDEI CTNAG 3 cut(s) 202, 254, 518
BstENI CCTNNNNNAGG 1 cut(s) 482
BstMAI GTCTC 1 cut(s) 488
BstMWI GCNNNNNNNGC 4 cut(s) 24, 151, 181, 287
BstNI CCWGG 2 cut(s) 37, 400
BstSCI CCNGG 2 cut(s) 35, 398
BstV1I GCAGC 2 cut(s) 285, 606
BstXI CCANNNNNNTGG 1 cut(s) 406
BsuRI GGCC 1 cut(s) 580
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 276, 552
Cac8I GCNNGC 1 cut(s) 515
Cfr13I GGNCC 2 cut(s) 487, 578
Csp6I GTAC 1 cut(s) 365
CviAII CATG 3 cut(s) 155, 218, 292
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 3 cut(s) 202, 254, 518
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoRII CCWGG 2 cut(s) 35, 398
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 3 cut(s) 158, 221, 295
FaiI YATR 6 cut(s) 156, 170, 219, 293, 434, 610
FatI CATG 3 cut(s) 154, 217, 291
Fnu4HI GCNGC 2 cut(s) 274, 595
Fsp4HI GCNGC 2 cut(s) 274, 595
GluI GCNGC 2 cut(s) 274, 595
GsuI CTGGAG 2 cut(s) 19, 382
HaeIII GGCC 1 cut(s) 580
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 3 cut(s) 158, 221, 295
HinfI GANTC 2 cut(s) 356, 416
HphI GGTGA 3 cut(s) 119, 181, 421
Hpy188I TCNGA 3 cut(s) 318, 338, 361
Hpy188III TCNNGA 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 332, 439, 577
HpyCH4III ACNGT 2 cut(s) 499, 547
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 4 cut(s) 78, 145, 154, 273
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 151, 181, 287
HpyF3I CTNAG 3 cut(s) 202, 254, 518
HpySE526I ACGT 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 3 cut(s) 158, 221, 295
LpnPI CCDG 7 cut(s) 22, 49, 241, 385, 412, 561, 583
Lsp1109I GCAGC 2 cut(s) 285, 606
LweI GCATC 1 cut(s) 277
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 4 cut(s) 39, 125, 417, 535
MboII GAAGA 3 cut(s) 351, 354, 415
MfeI CAATTG 2 cut(s) 71, 179
MluCI AATT 5 cut(s) 71, 136, 179, 439, 466
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 8 cut(s) 43, 57, 112, 338, 341, 344, 406, 488
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 1 cut(s) 392
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 597
MspR9I CCNGG 2 cut(s) 37, 400
MunI CAATTG 2 cut(s) 71, 179
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 2 cut(s) 37, 400
MwoI GCNNNNNNNGC 4 cut(s) 24, 151, 181, 287
NlaIII CATG 3 cut(s) 158, 221, 295
NmuCI GTSAC 4 cut(s) 39, 125, 417, 535
NspV TTCGAA 1 cut(s) 93
PctI GAATGC 1 cut(s) 314
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 398
PkrI GCNGC 2 cut(s) 275, 596
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Psp6I CCWGG 2 cut(s) 35, 398
PspGI CCWGG 2 cut(s) 35, 398
PspPI GGNCC 2 cut(s) 487, 578
PvuII CAGCTG 1 cut(s) 597
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 392
SatI GCNGC 2 cut(s) 274, 595
Sau96I GGNCC 2 cut(s) 487, 578
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 2 cut(s) 37, 400
SetI ASST 9 cut(s) 29, 41, 89, 104, 324, 398, 519, 588, 599
SfaNI GCATC 1 cut(s) 277
SfuI TTCGAA 1 cut(s) 93
SinI GGWCC 1 cut(s) 487
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 5 cut(s) 71, 136, 179, 439, 466
SspI AATATT 1 cut(s) 561
StyD4I CCNGG 2 cut(s) 35, 398
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 499, 547
TaiI ACGT 1 cut(s) 89
TaqI TCGA 2 cut(s) 93, 541
TasI AATT 5 cut(s) 71, 136, 179, 439, 466
TatI WGTACW 1 cut(s) 364
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TscAI CASTG 2 cut(s) 283, 552
TseFI GTSAC 4 cut(s) 39, 125, 417, 535
TseI GCWGC 2 cut(s) 273, 594
Tsp45I GTSAC 4 cut(s) 39, 125, 417, 535
TspDTI ATGAA 4 cut(s) 81, 234, 249, 559
TspRI CASTG 2 cut(s) 283, 552
VpaK11BI GGWCC 1 cut(s) 487
XagI CCTNNNNNAGG 1 cut(s) 482
XapI RAATTY 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 312
ZraI GACGTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.