AT2G17070

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000199
Physical Location & Seq
Reverse (-)
7430806 .. 7431939
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17070.1

Sequence Viewer

Length: 792 bp
ATGGCTGTCTCCTTCCACGTTCGATCTCACAGTTACCCCTCGATACCTCACCCACAAGCCGCTCATGTTGATGAGCAGTTGGCCAGATTAAGATCTTCTGAGGAAACCTCAACATCTTCAAGCTCTTCTATCTGTCAAAGACTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAAGCTTATTCGCCTACCCGTTACACAACAGGCTCTCGGTCAAGAGAAGAACAAGAAAGACGTTGAGCAACTTCTTGATGGATCTCTCAAGATATTGGATGTGTGCAACATATCCAAGGATGCTTTGTCGCAGATGAAAGAAGGTCTCATGGAGATCCAATCTATTCTAAGAAGAAAGCGCGGAGATCTATCAGGAGAGGTGAAGAAATACTTAGCCTCAAGAAAGTCCTTCAAGAAGACATTCCAGAAAGTACAAAAGTCCCTCAAGGCTGCACAAGCAGAAGACAACAAGGACAAATCTTTGGCTGTGTTTGGAGAAGCAGAAGCTGTTACAATTGCTATGTTTGATTCTCTCTTTAGCTACATGTCTGGATCAAAGACTTGTAGCAAATGGTCAGTCGTCTCAAAGCTAATGAACAAGAAGAAAATTACATGTGAAGCACAAGAAAACGAATTCACCAAGGTTGACTCCGAGTTCCAATCCGAGAAGACTTTGAAAATGGAGGACGTTCAGATCCTAGAGTCATGCATTCAAGATTTCGAAGATGGACTAGAATCATTATCTAAGTCTTTGATCAAATACAGAGTTTCAATTCTTAACAGCTTTGGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

263

Amino Acids

29.63

Weight (kDa)

8.16

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 48 - 259 2.5e-63 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AccII CGCG 1 cut(s) 357
AciI CCGC 2 cut(s) 60, 357
AclWI GGATC 4 cut(s) 265, 325, 556, 685
AcoI YGGCCR 2 cut(s) 81, 784
AcsI RAATTY 1 cut(s) 629
AfaI GTAC 1 cut(s) 429
AflIII ACRYGT 2 cut(s) 540, 608
AgsI TTSAA 6 cut(s) 120, 155, 409, 673, 710, 768
AluBI AGCT 6 cut(s) 123, 181, 503, 537, 586, 780
AluI AGCT 6 cut(s) 123, 181, 503, 537, 586, 780
Alw26I GTCTC 4 cut(s) 13, 174, 326, 583
AlwI GGATC 4 cut(s) 265, 325, 556, 685
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 2 cut(s) 81, 784
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 1 cut(s) 629
ArsI GACNNNNNNTTYG 2 cut(s) 558, 590
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 357
AsuHPI GGTGA 3 cut(s) 41, 388, 625
AsuII TTCGAA 1 cut(s) 717
BalI TGGCCA 2 cut(s) 83, 786
BbsI GAAGAC 3 cut(s) 419, 465, 671
BbvI GCAGC 1 cut(s) 433
BccI CCATC 2 cut(s) 248, 716
BclI TGATCA 1 cut(s) 750
BcoDI GTCTC 4 cut(s) 13, 174, 326, 583
BfaI CTAG 2 cut(s) 695, 728
BglII AGATCT 2 cut(s) 92, 361
BisI GCNGC 2 cut(s) 60, 447
BlsI GCNGC 2 cut(s) 61, 448
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 3 cut(s) 419, 465, 671
BplI GAGNNNNNCTC 2 cut(s) 92, 124
Bpu14I TTCGAA 1 cut(s) 717
BpuEI CTTGAG 3 cut(s) 248, 379, 425
BsaBI GATNNNNATC 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 291, 636
Bse8I GATNNNNATC 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 291, 636
BseGI GGATG 2 cut(s) 280, 301
BseJI GATNNNNATC 1 cut(s) 91
BseMII CTCAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 433
BsgI GTGCAG 1 cut(s) 432
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 2 cut(s) 83, 786
BslFI GGGAC 1 cut(s) 421
BsmAI GTCTC 4 cut(s) 13, 174, 326, 583
BsmBI CGTCTC 1 cut(s) 583
BsmFI GGGAC 1 cut(s) 421
BsmI GAATGC 1 cut(s) 705
BsnI GGCC 2 cut(s) 83, 786
Bso31I GGTCTC 1 cut(s) 326
Bsp119I TTCGAA 1 cut(s) 717
Bsp143I GATC 8 cut(s) 23, 92, 257, 330, 361, 548, 690, 750
BspACI CCGC 2 cut(s) 60, 357
BspANI GGCC 2 cut(s) 83, 786
BspCNI CTCAG 1 cut(s) 91
BspFNI CGCG 1 cut(s) 357
BspPI GGATC 4 cut(s) 265, 325, 556, 685
BspQI GCTCTTC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 717
BspTNI GGTCTC 1 cut(s) 326
BsrBI CCGCTC 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 291, 636
BssMI GATC 8 cut(s) 23, 92, 257, 330, 361, 548, 690, 750
BssT1I CCWWGG 2 cut(s) 291, 636
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 130
BstBI TTCGAA 1 cut(s) 717
BstDEI CTNAG 4 cut(s) 99, 344, 388, 741
BstF5I GGATG 2 cut(s) 280, 301
BstFNI CGCG 1 cut(s) 357
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 8 cut(s) 26, 95, 260, 333, 364, 551, 693, 753
BstMAI GTCTC 4 cut(s) 13, 174, 326, 583
BstMBI GATC 8 cut(s) 23, 92, 257, 330, 361, 548, 690, 750
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstNSI RCATGY 2 cut(s) 544, 612
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 433
BstV2I GAAGAC 3 cut(s) 419, 465, 671
BstX2I RGATCY 5 cut(s) 92, 257, 330, 361, 690
BstYI RGATCY 5 cut(s) 92, 257, 330, 361, 690
BsuRI GGCC 2 cut(s) 83, 786
BtsCI GGATG 2 cut(s) 280, 301
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 428
CviAII CATG 6 cut(s) 65, 164, 325, 541, 609, 702
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 4 cut(s) 99, 344, 388, 741
DpnI GATC 8 cut(s) 25, 94, 259, 332, 363, 550, 692, 752
DpnII GATC 8 cut(s) 23, 92, 257, 330, 361, 548, 690, 750
EaeI YGGCCR 2 cut(s) 81, 784
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 291, 636
Eco31I GGTCTC 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 629
EcoT14I CCWWGG 2 cut(s) 291, 636
EcoT22I ATGCAT 1 cut(s) 707
ErhI CCWWGG 2 cut(s) 291, 636
Esp3I CGTCTC 1 cut(s) 583
FaeI CATG 6 cut(s) 68, 167, 328, 544, 612, 705
FaiI YATR 8 cut(s) 66, 165, 287, 326, 518, 542, 610, 703
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 1 cut(s) 421
FatI CATG 6 cut(s) 64, 163, 324, 540, 608, 701
FbaI TGATCA 1 cut(s) 750
Fnu4HI GCNGC 2 cut(s) 60, 447
FokI GGATG 2 cut(s) 287, 308
Fsp4HI GCNGC 2 cut(s) 60, 447
FspBI CTAG 2 cut(s) 695, 728
GlaI GCGC 1 cut(s) 356
GluI GCNGC 2 cut(s) 60, 447
HaeIII GGCC 2 cut(s) 83, 786
HhaI GCGC 1 cut(s) 357
Hin1II CATG 6 cut(s) 68, 167, 328, 544, 612, 705
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 5 cut(s) 167, 524, 644, 698, 731
HphI GGTGA 3 cut(s) 41, 388, 625
Hpy166II GTNNAC 1 cut(s) 643
Hpy188I TCNGA 4 cut(s) 100, 649, 661, 690
Hpy8I GTNNAC 1 cut(s) 643
HpyAV CCTTC 4 cut(s) 22, 161, 311, 415
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 3 cut(s) 18, 237, 684
HpyCH4V TGCA 3 cut(s) 282, 449, 705
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
HpyF3I CTNAG 4 cut(s) 99, 344, 388, 741
HpySE526I ACGT 3 cut(s) 18, 237, 684
Hsp92II CATG 6 cut(s) 68, 167, 328, 544, 612, 705
HspAI GCGC 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 750
Kzo9I GATC 8 cut(s) 23, 92, 257, 330, 361, 548, 690, 750
LguI GCTCTTC 1 cut(s) 130
LpnPI CCDG 5 cut(s) 97, 191, 354, 434, 531
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 695, 728
MaeII ACGT 3 cut(s) 18, 237, 684
MaeIII GTNAC 3 cut(s) 32, 196, 505
MalI GATC 8 cut(s) 25, 94, 259, 332, 363, 550, 692, 752
MbiI CCGCTC 1 cut(s) 62
MboI GATC 8 cut(s) 23, 92, 257, 330, 361, 548, 690, 750
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 5 cut(s) 92, 257, 330, 361, 690
MlsI TGGCCA 2 cut(s) 83, 786
MluCI AATT 4 cut(s) 510, 603, 629, 768
MluNI TGGCCA 2 cut(s) 83, 786
MlyI GAGTC 3 cut(s) 176, 638, 707
MnlI CCTC 8 cut(s) 49, 57, 94, 118, 367, 403, 449, 673
Mox20I TGGCCA 2 cut(s) 83, 786
Mph1103I ATGCAT 1 cut(s) 707
MroXI GAANNNNTTC 1 cut(s) 416
MscI TGGCCA 2 cut(s) 83, 786
MseI TTAA 3 cut(s) 89, 774, 790
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 2 cut(s) 83, 786
MunI CAATTG 1 cut(s) 510
Mva1269I GAATGC 1 cut(s) 705
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 452
NdeII GATC 8 cut(s) 23, 92, 257, 330, 361, 548, 690, 750
NlaIII CATG 6 cut(s) 68, 167, 328, 544, 612, 705
NsiI ATGCAT 1 cut(s) 707
NspI RCATGY 2 cut(s) 544, 612
NspV TTCGAA 1 cut(s) 717
PciI ACATGT 2 cut(s) 540, 608
PciSI GCTCTTC 1 cut(s) 130
PctI GAATGC 1 cut(s) 705
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 2 cut(s) 524, 731
PkrI GCNGC 2 cut(s) 61, 448
PleI GAGTC 3 cut(s) 175, 638, 706
PpsI GAGTC 3 cut(s) 175, 638, 706
PscI ACATGT 2 cut(s) 540, 608
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 5 cut(s) 92, 257, 330, 361, 690
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 130
SaqAI TTAA 3 cut(s) 89, 774, 790
SatI GCNGC 2 cut(s) 60, 447
Sau3AI GATC 8 cut(s) 23, 92, 257, 330, 361, 548, 690, 750
SchI GAGTC 3 cut(s) 176, 638, 707
SfaNI GCATC 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 717
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 3 cut(s) 263, 394, 440
SmoI CTYRAG 3 cut(s) 263, 394, 440
Sse9I AATT 4 cut(s) 510, 603, 629, 768
SsiI CCGC 2 cut(s) 60, 357
SspMI CTAG 2 cut(s) 695, 728
StyI CCWWGG 2 cut(s) 291, 636
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 3 cut(s) 21, 240, 687
TaqI TCGA 3 cut(s) 22, 41, 717
TaqII GACCGA 1 cut(s) 203
TasI AATT 4 cut(s) 510, 603, 629, 768
TatI WGTACW 1 cut(s) 427
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 524, 731
Tru1I TTAA 3 cut(s) 89, 774, 790
Tru9I TTAA 3 cut(s) 89, 774, 790
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 326, 605
XapI RAATTY 1 cut(s) 629
XceI RCATGY 2 cut(s) 544, 612
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 2 cut(s) 695, 728
Zsp2I ATGCAT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.