MD10G1133600.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000199
Physical Location & Seq
Reverse (-)
21551766 .. 21552332
567 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1133600.v1.1.491

Sequence Viewer

Length: 567 bp
ATGGAAAGGAACACATCAAGTTTGAATTGTACGTCAACCAAAACGCGAAGAAATGACTTTCCCACTCGTTCTAACAACTTCCCCCCTAGGCCACACCCGATTGTTCAAAAAATTGACGAGCATTTGTGTAGATTGAGGTCTTCCGAGGCCACTTCCATATCATCAACATCAATCAGCCAAAAATTAAGTGGTCTCCAAGACTTGCATGATTCTGTTGAGAGGTTGCTTCAGTATCAGTTGCCCCTCACTCAACAGGCCTTGGCACAAGCGCAGAATGAGAAATGCACTACTGAGGTATTAGACGGCTCTCTCAGGCCCTTGGATGTTTGTGGAAGTGCAAAGGATGCCCTTTCGCAAACCAAGGAATGTGTTCAGGACGTTCAATCAATCATAAGAAGACGGGGAGTTGAATCTGGAGCACTCACAAGCAAGGTCAAGTACTTAACATCCAGGACGACGGTAAAAATGACAATCAACAAGGCTATGTCAAATCTCAAGGGAATCGAAATCCAACCCATCTCCCTCAACAACCACCAAGAAACGATAGCCATCGTTAGCAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

189

Amino Acids

20.9

Weight (kDa)

9.34

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 61 - 186 7.8e-37 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 2 cut(s) 31, 440
AgsI TTSAA 4 cut(s) 25, 107, 383, 410
AjnI CCWGG 1 cut(s) 449
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 197
AoxI GGCC 4 cut(s) 89, 147, 255, 314
Asp700I GAANNNNTTC 1 cut(s) 369
AspA2I CCTAGG 1 cut(s) 86
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 315
AvrII CCTAGG 1 cut(s) 86
BbsI GAAGAC 2 cut(s) 132, 403
Bbv12I GWGCWC 1 cut(s) 421
BccI CCATC 2 cut(s) 524, 557
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 451
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 87
BlnI CCTAGG 1 cut(s) 86
BmcAI AGTACT 1 cut(s) 440
Bme1390I CCNGG 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 451
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 2 cut(s) 132, 403
BpmI CTGGAG 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 5 cut(s) 86, 144, 258, 318, 360
Bse8I GATNNNNATC 1 cut(s) 548
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 5 cut(s) 86, 144, 258, 318, 360
BseGI GGATG 3 cut(s) 328, 349, 446
BseJI GATNNNNATC 1 cut(s) 548
BseMII CTCAG 2 cut(s) 282, 325
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 4 cut(s) 91, 149, 257, 316
BsiHKAI GWGCWC 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 4 cut(s) 91, 149, 257, 316
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 421
BspANI GGCC 4 cut(s) 91, 149, 257, 316
BspCNI CTCAG 2 cut(s) 283, 324
BspFNI CGCG 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 197
BssECI CCNNGG 5 cut(s) 86, 144, 258, 318, 360
BssT1I CCWWGG 4 cut(s) 86, 258, 318, 360
Bst2UI CCWGG 1 cut(s) 451
Bst4CI ACNGT 1 cut(s) 460
BstAPI GCANNNNNTGC 1 cut(s) 344
BstDEI CTNAG 2 cut(s) 291, 311
BstF5I GGATG 3 cut(s) 328, 349, 446
BstFNI CGCG 1 cut(s) 46
BstHHI GCGC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNI CCWGG 1 cut(s) 451
BstSCI CCNGG 1 cut(s) 449
BstUI CGCG 1 cut(s) 46
BstV2I GAAGAC 2 cut(s) 132, 403
BsuRI GGCC 4 cut(s) 91, 149, 257, 316
BtsCI GGATG 3 cut(s) 328, 349, 446
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 315
Csp6I GTAC 2 cut(s) 30, 439
CviAII CATG 1 cut(s) 206
CviJI RGCY 8 cut(s) 91, 149, 177, 257, 306, 316, 482, 548
CviKI_1 RGCY 8 cut(s) 91, 149, 177, 257, 306, 316, 482, 548
CviQI GTAC 2 cut(s) 30, 439
DdeI CTNAG 2 cut(s) 291, 311
Eco130I CCWWGG 4 cut(s) 86, 258, 318, 360
Eco147I AGGCCT 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 449
EcoT14I CCWWGG 4 cut(s) 86, 258, 318, 360
ErhI CCWWGG 4 cut(s) 86, 258, 318, 360
FaeI CATG 1 cut(s) 209
FaiI YATR 4 cut(s) 158, 207, 392, 485
FatI CATG 1 cut(s) 205
FokI GGATG 3 cut(s) 335, 356, 433
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 4 cut(s) 91, 149, 257, 316
HhaI GCGC 1 cut(s) 271
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 3 cut(s) 209, 410, 501
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 374, 414
Hpy8I GTNNAC 1 cut(s) 36
Hpy99I CGWCG 1 cut(s) 460
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 2 cut(s) 32, 378
HpyCH4V TGCA 3 cut(s) 205, 285, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 2 cut(s) 291, 311
HpySE526I ACGT 2 cut(s) 32, 378
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 269
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 6 cut(s) 239, 298, 359, 399, 436, 463
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 87
MaeII ACGT 2 cut(s) 32, 378
MboII GAAGA 3 cut(s) 60, 132, 408
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 3 cut(s) 25, 111, 182
MmeI TCCRAC 1 cut(s) 535
MnlI CCTC 6 cut(s) 129, 139, 213, 254, 286, 533
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 2 cut(s) 185, 443
MspR9I CCNGG 1 cut(s) 451
MvaI CCWGG 1 cut(s) 451
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 344
NlaIII CATG 1 cut(s) 209
PceI AGGCCT 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 209, 410, 501
PfoI TCCNGGA 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspPI GGNCC 1 cut(s) 315
RsaI GTAC 2 cut(s) 31, 440
RsaNI GTAC 2 cut(s) 30, 439
SaqAI TTAA 2 cut(s) 185, 443
Sau96I GGNCC 1 cut(s) 315
ScaI AGTACT 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 451
SduI GDGCHC 1 cut(s) 421
SetI ASST 6 cut(s) 35, 140, 224, 297, 381, 435
SfaNI GCATC 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 3 cut(s) 25, 111, 182
SseBI AGGCCT 1 cut(s) 257
SspMI CTAG 1 cut(s) 87
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 449
StyI CCWWGG 4 cut(s) 86, 258, 318, 360
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 2 cut(s) 35, 381
TaqI TCGA 1 cut(s) 504
TasI AATT 3 cut(s) 25, 111, 182
TatI WGTACW 1 cut(s) 438
TfiI GAWTC 3 cut(s) 209, 410, 501
Tru1I TTAA 2 cut(s) 185, 443
Tru9I TTAA 2 cut(s) 185, 443
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmaJI CCTAGG 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 1 cut(s) 87
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.