Rh6AG238100

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000199
Physical Location & Seq
Reverse (-)
42367818 .. 42368923
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG238100.1

Sequence Viewer

Length: 825 bp
ATGGCTTACCACACTCGATCTAACAGCTTCCCCTCTAGGCCACACCCAGTCAATCAAGAAGTAGATGAATATTTGTCCAGATTGAGGTCTTCTGAAACAACTTCCACATCATCTATAAGCCACAGACTAAGTGGTCTTCAAGACTTGCATGATTGTGTTGATAGGTTGCTTCAATTGCCACTCACCCAACAATCCTTGGCACAAGAGAAGCATCAGAAATGGGCTGATGAGATATTAGATGGCTCTCTAAGGATGTTGGATGTTTGTAGCACTGCCAAGGATGCGATGTTGCAAACCAAGGAGTGCATACAAGAACTTCAATCAATCATTCGAAGAAGGCGTAAAGACCAATCTGGAGTGGTCACAAGTGAGGTTAGAAAATACTTAACCTTGAGGAAGACAGTGAAAAAGGCAATCCACAAGGCTTTGGGGAATCTGAAGGCAAACAGATCCACTTTCTCTTCGCTCAACAACGACCAAGAGACTATCTCCATTTTTAACAAGCTGAGAGATGTTGAAGTAGTCACTCTCACAGTGTTGGAATCAGTGTTGTCCTTCATCTCTGGGCCAAAGTCAAAGCCTAGCAGCTGGTTTTTGGTTTCCAAGATGGTGCAGTCAAAAAGAATAGCTTGCGAGGAAGAAATGAAAGTAAACGAATTTGCACAAGTGGATGCTGCATTGAAGTCACACACGAGTTTAGACGATGCACACAACCAATTTAACAATCTGAACTCATGCATTCAAGACCAAGAAGAAGGACTCGACTGCCTACTTAGGCTATTGATCAAAACAAGAGTCTCCCTTCTCAACATCTCAAGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

274

Amino Acids

31.09

Weight (kDa)

8.7

Isoelectric Point (pI)

62.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 43 - 271 2.2e-83 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 132
AclWI GGATC 1 cut(s) 444
AcsI RAATTY 1 cut(s) 656
AcuI CTGAAG 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 84
AgsI TTSAA 6 cut(s) 140, 173, 320, 518, 682, 743
AluBI AGCT 4 cut(s) 27, 505, 588, 629
AluI AGCT 4 cut(s) 27, 505, 588, 629
Alw26I GTCTC 2 cut(s) 476, 802
AlwI GGATC 1 cut(s) 444
AoxI GGCC 2 cut(s) 38, 566
ApeKI GCWGC 2 cut(s) 585, 674
ApoI RAATTY 1 cut(s) 656
ArsI GACNNNNNNTTYG 2 cut(s) 780, 812
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 1 cut(s) 175
AsuII TTCGAA 1 cut(s) 331
BauI CACGAG 1 cut(s) 691
BbsI GAAGAC 3 cut(s) 81, 128, 404
BbvI GCAGC 2 cut(s) 597, 661
BccI CCATC 2 cut(s) 233, 601
BclI TGATCA 1 cut(s) 783
BcoDI GTCTC 2 cut(s) 476, 802
BfaI CTAG 3 cut(s) 36, 582, 823
BisI GCNGC 2 cut(s) 586, 675
BlsI GCNGC 2 cut(s) 587, 676
BmgT120I GGNCC 1 cut(s) 566
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 4 cut(s) 220, 271, 661, 694
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 3 cut(s) 81, 128, 404
BplI GAGNNNNNCTC 2 cut(s) 473, 505
BpmI CTGGAG 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 331
BpuEI CTTGAG 2 cut(s) 412, 799
BsaJI CCNNGG 3 cut(s) 195, 276, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 195, 276, 297
BseGI GGATG 4 cut(s) 258, 265, 286, 676
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 597, 661
BsgI GTGCAG 1 cut(s) 632
BshFI GGCC 2 cut(s) 40, 568
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 2 cut(s) 476, 802
BsmI GAATGC 1 cut(s) 738
BsnI GGCC 2 cut(s) 40, 568
Bsp119I TTCGAA 1 cut(s) 331
Bsp143I GATC 3 cut(s) 17, 449, 783
BspANI GGCC 2 cut(s) 40, 568
BspCNI CTCAG 1 cut(s) 498
BspPI GGATC 1 cut(s) 444
BspT104I TTCGAA 1 cut(s) 331
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 195, 276, 297
BssMI GATC 3 cut(s) 17, 449, 783
BssSI CACGAG 1 cut(s) 691
BssT1I CCWWGG 3 cut(s) 195, 276, 297
Bst2BI CACGAG 1 cut(s) 691
Bst4CI ACNGT 2 cut(s) 403, 535
Bst6I CTCTTC 1 cut(s) 466
BstBI TTCGAA 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 4 cut(s) 128, 248, 506, 773
BstF5I GGATG 4 cut(s) 258, 265, 286, 676
BstKTI GATC 3 cut(s) 20, 452, 786
BstMAI GTCTC 2 cut(s) 476, 802
BstMBI GATC 3 cut(s) 17, 449, 783
BstMWI GCNNNNNNNGC 2 cut(s) 175, 281
BstV1I GCAGC 2 cut(s) 597, 661
BstV2I GAAGAC 3 cut(s) 81, 128, 404
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuRI GGCC 2 cut(s) 40, 568
BtgZI GCGATG 1 cut(s) 299
BtsCI GGATG 4 cut(s) 258, 265, 286, 676
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 4 cut(s) 270, 408, 540, 552
Cac8I GCNNGC 1 cut(s) 631
Cfr13I GGNCC 1 cut(s) 566
CviAII CATG 2 cut(s) 149, 735
DdeI CTNAG 4 cut(s) 128, 248, 506, 773
DpnI GATC 3 cut(s) 19, 451, 785
DpnII GATC 3 cut(s) 17, 449, 783
DrdI GACNNNNNNGTC 1 cut(s) 132
DseDI GACNNNNNNGTC 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 466
EarI CTCTTC 1 cut(s) 466
Eco130I CCWWGG 3 cut(s) 195, 276, 297
Eco57I CTGAAG 1 cut(s) 458
EcoT14I CCWWGG 3 cut(s) 195, 276, 297
EcoT22I ATGCAT 1 cut(s) 740
ErhI CCWWGG 3 cut(s) 195, 276, 297
FaeI CATG 2 cut(s) 152, 738
FaiI YATR 4 cut(s) 116, 150, 308, 736
FalI AAGNNNNNCTT 2 cut(s) 613, 645
FatI CATG 2 cut(s) 148, 734
FbaI TGATCA 1 cut(s) 783
Fnu4HI GCNGC 2 cut(s) 586, 675
FokI GGATG 4 cut(s) 265, 272, 293, 683
Fsp4HI GCNGC 2 cut(s) 586, 675
FspBI CTAG 3 cut(s) 36, 582, 823
GluI GCNGC 2 cut(s) 586, 675
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 2 cut(s) 40, 568
Hin1II CATG 2 cut(s) 152, 738
HinfI GANTC 4 cut(s) 433, 542, 759, 795
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 652
Hpy188I TCNGA 4 cut(s) 94, 216, 438, 729
Hpy188III TCNNGA 5 cut(s) 56, 78, 140, 354, 743
Hpy8I GTNNAC 1 cut(s) 652
HpyAV CCTTC 5 cut(s) 330, 433, 565, 749, 812
HpyCH4III ACNGT 2 cut(s) 403, 535
HpyCH4V TGCA 8 cut(s) 148, 292, 306, 613, 662, 677, 707, 738
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 281
HpyF3I CTNAG 4 cut(s) 128, 248, 506, 773
Hsp92II CATG 2 cut(s) 152, 738
Ksp22I TGATCA 1 cut(s) 783
Kzo9I GATC 3 cut(s) 17, 449, 783
LpnPI CCDG 5 cut(s) 60, 91, 339, 549, 574
Lsp1109I GCAGC 2 cut(s) 597, 661
LweI GCATC 4 cut(s) 220, 271, 661, 694
MaeI CTAG 3 cut(s) 36, 582, 823
MaeIII GTNAC 3 cut(s) 361, 523, 684
MalI GATC 3 cut(s) 19, 451, 785
MboI GATC 3 cut(s) 17, 449, 783
MboII GAAGA 7 cut(s) 81, 128, 345, 409, 453, 650, 764
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 449
MluCI AATT 3 cut(s) 173, 656, 716
MlyI GAGTC 2 cut(s) 753, 804
MmeI TCCRAC 2 cut(s) 237, 519
MnlI CCTC 5 cut(s) 43, 78, 364, 387, 628
Mph1103I ATGCAT 1 cut(s) 740
MseI TTAA 3 cut(s) 386, 498, 720
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 588
MunI CAATTG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 738
MwoI GCNNNNNNNGC 2 cut(s) 175, 281
NdeII GATC 3 cut(s) 17, 449, 783
NlaIII CATG 2 cut(s) 152, 738
NmuCI GTSAC 3 cut(s) 361, 523, 684
NsiI ATGCAT 1 cut(s) 740
NspV TTCGAA 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 337
PctI GAATGC 1 cut(s) 738
PfeI GAWTC 2 cut(s) 433, 542
PkrI GCNGC 2 cut(s) 587, 676
PleI GAGTC 2 cut(s) 753, 803
PpsI GAGTC 2 cut(s) 753, 803
PspPI GGNCC 1 cut(s) 566
PsuI RGATCY 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 588
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 3 cut(s) 386, 498, 720
SatI GCNGC 2 cut(s) 586, 675
Sau3AI GATC 3 cut(s) 17, 449, 783
Sau96I GGNCC 1 cut(s) 566
SchI GAGTC 2 cut(s) 753, 804
SetI ASST 8 cut(s) 29, 89, 167, 375, 392, 507, 590, 631
SfaNI GCATC 4 cut(s) 220, 271, 661, 694
SfuI TTCGAA 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 391, 814
SmoI CTYRAG 2 cut(s) 391, 814
Sse9I AATT 3 cut(s) 173, 656, 716
SspI AATATT 1 cut(s) 71
SspMI CTAG 3 cut(s) 36, 582, 823
StyI CCWWGG 3 cut(s) 195, 276, 297
TaaI ACNGT 2 cut(s) 403, 535
TaqI TCGA 3 cut(s) 16, 331, 762
TasI AATT 3 cut(s) 173, 656, 716
TfiI GAWTC 2 cut(s) 433, 542
Tru1I TTAA 3 cut(s) 386, 498, 720
Tru9I TTAA 3 cut(s) 386, 498, 720
TscAI CASTG 4 cut(s) 277, 408, 540, 552
TseFI GTSAC 3 cut(s) 361, 523, 684
TseI GCWGC 2 cut(s) 585, 674
Tsp45I GTSAC 3 cut(s) 361, 523, 684
TspDTI ATGAA 3 cut(s) 81, 547, 659
TspRI CASTG 4 cut(s) 277, 408, 540, 552
XapI RAATTY 1 cut(s) 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XspI CTAG 3 cut(s) 36, 582, 823
Zsp2I ATGCAT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.