Prupe.8G175300_v2.0.a1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000199
Physical Location & Seq
Forward (+)
17795480 .. 17796193
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G175300.1

Sequence Viewer

Length: 675 bp
ATGGCTTTCCACACTCGCTCTAACAGCTTCCCTTCAAGGCCACACCCAGTCGTTCAAGAAATTGATGAACATTTGTGTAGATTGAGGTCTTCTGAGGCCACCTCTACATCATCATCATCAATCAGCCACAAACTGAGTGGCCTCCAAAACTTGCATGATTCCTTGGCACAAGAGCAGAATGAGAAATGGACTAATGAGCTATTAGATGGCTCTCTGAGGCTCTTGGATATTTGTAGCGCTGCCAAGGATGCCTTGTTGCAAACCAAGGAATGCGTACAGGACCTTCAATCAATCATGCGAAGAACACAGAGAGGTGAATGTGGAGCACTCACAACTGAGGTCAGGAAATACTTGACCTCTAGGAAGATGGTGAAAAAGGCAATCCACAAAGCTATGGGAAATGTCAAGGGATCGAGTTTCTCATCCCTCAACAAGGACAATAAGACTATTGCCATTGTTAGCACTTTGAGAGATGTTGAAGCAGTCACTTTCACTGCGTTCGAGTCCCATCTTTCTTTCATCTCCGGTCCAAAATCACAGCCAAGCAGCTGGTCATTGGTCTCCAAGATGATGCAATCAAAAAAAGTAGCTTGTGTGGAAGAAAATGAAGCAAATGAGTTTGCAAAGGTGGATGGTGGCCAGCTTCTCAATTTCTCTTTCAGGTTGCCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

225

Amino Acids

24.92

Weight (kDa)

8.98

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 418
AcoI YGGCCR 1 cut(s) 637
AfaI GTAC 1 cut(s) 276
AfeI AGCGCT 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 4 cut(s) 36, 56, 287, 479
AluBI AGCT 6 cut(s) 27, 199, 392, 549, 590, 643
AluI AGCT 6 cut(s) 27, 199, 392, 549, 590, 643
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 565
AlwI GGATC 1 cut(s) 418
Aor51HI AGCGCT 1 cut(s) 238
AoxI GGCC 4 cut(s) 38, 96, 139, 637
ApeKI GCWGC 2 cut(s) 239, 546
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 2 cut(s) 280, 527
AsuHPI GGTGA 2 cut(s) 326, 382
AvaII GGWCC 2 cut(s) 280, 527
BalI TGGCCA 1 cut(s) 639
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 2 cut(s) 226, 558
BccI CCATC 4 cut(s) 200, 361, 516, 626
BcoDI GTCTC 1 cut(s) 565
BfaI CTAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 240
BisI GCNGC 2 cut(s) 240, 547
BlsI GCNGC 2 cut(s) 241, 548
Bme18I GGWCC 2 cut(s) 280, 527
BmgT120I GGNCC 2 cut(s) 280, 527
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 2 cut(s) 238, 561
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BsaI GGTCTC 1 cut(s) 565
BsaJI CCNNGG 3 cut(s) 162, 243, 264
BsaWI WCCGGW 1 cut(s) 524
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 162, 243, 264
BseGI GGATG 3 cut(s) 253, 422, 637
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMII CTCAG 4 cut(s) 84, 125, 206, 327
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 226, 558
BshFI GGCC 4 cut(s) 40, 98, 141, 639
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 1 cut(s) 565
BsmFI GGGAC 1 cut(s) 490
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 4 cut(s) 40, 98, 141, 639
Bso31I GGTCTC 1 cut(s) 565
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 1 cut(s) 410
BspANI GGCC 4 cut(s) 40, 98, 141, 639
BspCNI CTCAG 4 cut(s) 85, 126, 207, 328
BspPI GGATC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 565
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 162, 243, 264
BssMI GATC 1 cut(s) 410
BssT1I CCWWGG 3 cut(s) 162, 243, 264
BstC8I GCNNGC 1 cut(s) 641
BstDEI CTNAG 4 cut(s) 93, 134, 215, 336
BstENI CCTNNNNNAGG 1 cut(s) 431
BstF5I GGATG 3 cut(s) 253, 422, 637
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 1 cut(s) 413
BstMAI GTCTC 1 cut(s) 565
BstMBI GATC 1 cut(s) 410
BstMWI GCNNNNNNNGC 2 cut(s) 24, 248
BstV1I GCAGC 2 cut(s) 226, 558
BstV2I GAAGAC 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 549
BsuRI GGCC 4 cut(s) 40, 98, 141, 639
BtsCI GGATG 3 cut(s) 253, 422, 637
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 641
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 280, 527
Csp6I GTAC 1 cut(s) 275
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 2 cut(s) 155, 295
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 4 cut(s) 93, 134, 215, 336
DpnI GATC 1 cut(s) 412
DpnII GATC 1 cut(s) 410
EaeI YGGCCR 1 cut(s) 637
Eco130I CCWWGG 3 cut(s) 162, 243, 264
Eco31I GGTCTC 1 cut(s) 565
Eco47I GGWCC 2 cut(s) 280, 527
Eco47III AGCGCT 1 cut(s) 238
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 280
EcoT14I CCWWGG 3 cut(s) 162, 243, 264
ErhI CCWWGG 3 cut(s) 162, 243, 264
FaeI CATG 2 cut(s) 158, 298
FaiI YATR 3 cut(s) 156, 296, 395
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 1 cut(s) 490
FatI CATG 2 cut(s) 154, 294
Fnu4HI GCNGC 2 cut(s) 240, 547
FokI GGATG 3 cut(s) 260, 409, 644
Fsp4HI GCNGC 2 cut(s) 240, 547
FspBI CTAG 1 cut(s) 360
GlaI GCGC 1 cut(s) 238
GluI GCNGC 2 cut(s) 240, 547
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 4 cut(s) 40, 98, 141, 639
HapII CCGG 1 cut(s) 525
HhaI GCGC 1 cut(s) 239
Hin1II CATG 2 cut(s) 158, 298
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 2 cut(s) 158, 503
HpaII CCGG 1 cut(s) 525
HphI GGTGA 2 cut(s) 326, 382
Hpy188I TCNGA 2 cut(s) 94, 216
Hpy188III TCNNGA 2 cut(s) 56, 343
HpyAV CCTTC 2 cut(s) 42, 293
HpyCH4V TGCA 4 cut(s) 154, 259, 574, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 248
HpyF3I CTNAG 4 cut(s) 93, 134, 215, 336
Hsp92II CATG 2 cut(s) 158, 298
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 1 cut(s) 410
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 7 cut(s) 60, 263, 328, 535, 538, 646, 653
Lsp1109I GCAGC 2 cut(s) 226, 558
LweI GCATC 2 cut(s) 238, 561
MaeI CTAG 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 484
MalI GATC 1 cut(s) 412
MboI GATC 1 cut(s) 410
MboII GAAGA 4 cut(s) 81, 312, 376, 611
MhlI GDGCHC 1 cut(s) 328
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 2 cut(s) 60, 649
MluNI TGGCCA 1 cut(s) 639
MlyI GAGTC 1 cut(s) 512
MnlI CCTC 9 cut(s) 78, 88, 112, 152, 210, 305, 331, 367, 437
Mox20I TGGCCA 1 cut(s) 639
MscI TGGCCA 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 639
MspA1I CMGCKG 1 cut(s) 549
MspI CCGG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 24, 248
NdeII GATC 1 cut(s) 410
NlaIII CATG 2 cut(s) 158, 298
NmuCI GTSAC 1 cut(s) 484
PctI GAATGC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 2 cut(s) 241, 548
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
PspPI GGNCC 2 cut(s) 280, 527
PspPPI RGGWCCY 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 549
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SatI GCNGC 2 cut(s) 240, 547
Sau3AI GATC 1 cut(s) 410
Sau96I GGNCC 2 cut(s) 280, 527
SchI GAGTC 1 cut(s) 512
SduI GDGCHC 1 cut(s) 328
SfaNI GCATC 2 cut(s) 238, 561
SinI GGWCC 2 cut(s) 280, 527
Sse9I AATT 2 cut(s) 60, 649
SspMI CTAG 1 cut(s) 360
StyI CCWWGG 3 cut(s) 162, 243, 264
TaqI TCGA 2 cut(s) 413, 501
TasI AATT 2 cut(s) 60, 649
TfiI GAWTC 1 cut(s) 158
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 2 cut(s) 239, 546
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 3 cut(s) 81, 508, 621
TspRI CASTG 1 cut(s) 499
VpaK11BI GGWCC 2 cut(s) 280, 527
XagI CCTNNNNNAGG 1 cut(s) 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.