FvH4_2g16311

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000199
Physical Location & Seq
Forward (+)
14223167 .. 14223586
420 bp
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UTR
Exon/CDS
Intron
FvH4_2g16311.t1

Sequence Viewer

Length: 420 bp
ATGGCTTACCACACTCGCTCTAACAGCTTCCCATCAAGGCCACACCCCATCATTCAAGAAGTTGATGAACATTTGTGCAGATTGAGGTCTTCCGAAGCCACATCCACATCATCATCATTGATAAGCGACAAACTACATGGCCAGCAAGACTTGCTTGATTGTGTTGATAGGTTGCTTCAGTTGCAAGGCACCCAACAAGCATTAGCACAAGAGCAACAACAGAAATGGGCTAATGAGCTTTTAGAGGGATCTCTCCGGCTCTTGGATATTTGCAGCACCGCAAAAGATGCCATGTCAGAAACCAAGGAGTGCATACAAGAGCTTCAATATCAATCATTAGAAGAAACAAGGAAGGTGAAACTAGACTCACTAGTGAGGTCAGGAATGTTAGAATTATTGTCTTATTGCTTTACTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

140

Amino Acids

15.8

Weight (kDa)

5.16

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 110 5.1e-23 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 1 cut(s) 279
AclWI GGATC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 2 cut(s) 56, 326
AhlI ACTAGT 1 cut(s) 370
AluBI AGCT 3 cut(s) 27, 238, 322
AluI AGCT 3 cut(s) 27, 238, 322
AlwI GGATC 1 cut(s) 256
AoxI GGCC 2 cut(s) 38, 139
ApeKI GCWGC 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 367
BalI TGGCCA 1 cut(s) 141
BanI GGYRCC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 285
BccI CCATC 2 cut(s) 40, 56
BcuI ACTAGT 1 cut(s) 370
BfaI CTAG 3 cut(s) 362, 371, 418
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 2 cut(s) 40, 141
BshNI GGYRCC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 262
BsnI GGCC 2 cut(s) 40, 141
Bsp143I GATC 1 cut(s) 248
BspACI CCGC 1 cut(s) 279
BspANI GGCC 2 cut(s) 40, 141
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 1 cut(s) 256
BspT107I GGYRCC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 303
BstAPI GCANNNNNTGC 2 cut(s) 151, 287
BstC8I GCNNGC 1 cut(s) 143
BstF5I GGATG 1 cut(s) 101
BstKTI GATC 1 cut(s) 251
BstMBI GATC 1 cut(s) 248
BstMWI GCNNNNNNNGC 4 cut(s) 24, 151, 181, 287
BstV1I GCAGC 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 2 cut(s) 40, 141
BtsCI GGATG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 143
CviAII CATG 2 cut(s) 137, 292
CviJI RGCY 9 cut(s) 5, 27, 40, 98, 141, 230, 238, 259, 322
CviKI_1 RGCY 9 cut(s) 5, 27, 40, 98, 141, 230, 238, 259, 322
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 2 cut(s) 140, 295
FaiI YATR 3 cut(s) 138, 293, 314
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 2 cut(s) 136, 291
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 3 cut(s) 362, 371, 418
GluI GCNGC 1 cut(s) 274
HaeIII GGCC 2 cut(s) 40, 141
HapII CCGG 1 cut(s) 256
Hin1II CATG 2 cut(s) 140, 295
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 256
HphI GGTGA 1 cut(s) 367
Hpy188I TCNGA 2 cut(s) 94, 298
Hpy188III TCNNGA 2 cut(s) 56, 381
HpyAV CCTTC 1 cut(s) 346
HpyCH4V TGCA 4 cut(s) 78, 184, 273, 312
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 151, 181, 287
Hsp92II CATG 2 cut(s) 140, 295
Kzo9I GATC 1 cut(s) 248
LpnPI CCDG 3 cut(s) 155, 269, 366
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 1 cut(s) 277
MaeI CTAG 3 cut(s) 362, 371, 418
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 2 cut(s) 81, 353
MflI RGATCY 1 cut(s) 248
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 1 cut(s) 392
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 3 cut(s) 78, 238, 369
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 141
MspI CCGG 1 cut(s) 256
MwoI GCNNNNNNNGC 4 cut(s) 24, 151, 181, 287
NdeII GATC 1 cut(s) 248
NlaIII CATG 2 cut(s) 140, 295
NlaIV GGNNCC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 248
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 1 cut(s) 248
SchI GAGTC 1 cut(s) 359
SetI ASST 7 cut(s) 29, 89, 173, 240, 324, 357, 380
SfaNI GCATC 1 cut(s) 277
SpeI ACTAGT 1 cut(s) 370
Sse9I AATT 1 cut(s) 392
SsiI CCGC 1 cut(s) 279
SspMI CTAG 3 cut(s) 362, 371, 418
StyI CCWWGG 1 cut(s) 303
TasI AATT 1 cut(s) 392
TseI GCWGC 1 cut(s) 273
TspDTI ATGAA 1 cut(s) 81
XspI CTAG 3 cut(s) 362, 371, 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.