Rorug06G0129100

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000199
Physical Location & Seq
Reverse (-)
17900511 .. 17900996
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0129100.1

Sequence Viewer

Length: 486 bp
ATGCTGCTTGCCATGGTGAAGATTGCCATTTCAATACTTCTACTATCCCTAACCCTAGTTGTGATAGTAGAAGGGAATGATATTTCTTCAATAGTGTTACAAAGGACCAATGGCAGCTCATCTGTGTCGCCATTTCTGAAGAAAATTGTGGAGTGGCCAAAACCACGAGAACCGGCAGGGGTGTCTGAACAAGCCGTGCATGGATATGTCGCGGGCCACAGGAGTTTCCCCGCAGATGGCGGTGCTGTAGAAACCAATGCTTGTGTTGGCGTGAGCTTGGACGTGAATAATTGCAGGTTTTGTGGACGTAGATGTCCCTTCGGATGGCAATGTTGTCGTGGTTTTTGCGTGAATACAAATATCAACATTTTCAATTGTGGGAGATGTGGTAATAGGTGCCCATTTGGGGTACTTTGCTCTTATGGAATGTGTGGGTATGCTCAGCCTCAACCTTGGCCTCGTCCTCTGAAGCAACCTCAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

161

Amino Acids

17.46

Weight (kDa)

8.91

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 85 - 147 3.2e-19 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 312
Acc36I ACCTGC 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 396
AccII CGCG 1 cut(s) 212
AciI CCGC 3 cut(s) 212, 231, 240
AcoI YGGCCR 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 3 cut(s) 236, 324, 406
AgsI TTSAA 3 cut(s) 33, 90, 373
AjiI CACGTC 1 cut(s) 283
AluBI AGCT 2 cut(s) 117, 276
AluI AGCT 2 cut(s) 117, 276
AoxI GGCC 3 cut(s) 155, 214, 455
ApeKI GCWGC 2 cut(s) 4, 114
AspS9I GGNCC 2 cut(s) 105, 214
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 105
BaeGI GKGCMC 1 cut(s) 401
BalI TGGCCA 1 cut(s) 157
BanI GGYRCC 1 cut(s) 396
BauI CACGAG 1 cut(s) 165
BbvI GCAGC 1 cut(s) 126
BccI CCATC 2 cut(s) 230, 318
BceAI ACGGC 1 cut(s) 179
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 285
BisI GCNGC 2 cut(s) 5, 115
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 2 cut(s) 6, 116
Bme18I GGWCC 1 cut(s) 105
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 105, 214
BmiI GGNNCC 1 cut(s) 398
Bpu1102I GCTNAGC 1 cut(s) 441
BsaJI CCNNGG 2 cut(s) 12, 452
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 324, 406
Bse118I RCCGGY 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 12, 452
BseGI GGATG 1 cut(s) 329
BseLI CCNNNNNNNGG 3 cut(s) 236, 324, 406
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 455
BseSI GKGCMC 1 cut(s) 401
BseXI GCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 3 cut(s) 157, 216, 457
BshNI GGYRCC 1 cut(s) 396
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 3 cut(s) 236, 324, 406
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 3 cut(s) 157, 216, 457
Bsp1286I GDGCHC 1 cut(s) 401
Bsp1720I GCTNAGC 1 cut(s) 441
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 3 cut(s) 212, 231, 240
BspANI GGCC 3 cut(s) 157, 216, 457
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 398
BspMI ACCTGC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 12, 452
BssSI CACGAG 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 12, 452
Bst2BI CACGAG 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 9, 214
BstDEI CTNAG 2 cut(s) 441, 483
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 329
BstFNI CGCG 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 401
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 126
BsuRI GGCC 3 cut(s) 157, 216, 457
BtgI CCRYGG 1 cut(s) 12
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 329
BveI ACCTGC 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 9, 214
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 105, 214
Csp6I GTAC 1 cut(s) 410
CviAII CATG 2 cut(s) 13, 200
CviJI RGCY 7 cut(s) 117, 157, 194, 216, 276, 445, 457
CviKI_1 RGCY 7 cut(s) 117, 157, 194, 216, 276, 445, 457
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 2 cut(s) 441, 483
DrdI GACNNNNNNGTC 1 cut(s) 312
DseDI GACNNNNNNGTC 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 155
Eco130I CCWWGG 2 cut(s) 12, 452
Eco47I GGWCC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 158
EcoT14I CCWWGG 2 cut(s) 12, 452
ErhI CCWWGG 2 cut(s) 12, 452
FaeI CATG 2 cut(s) 16, 203
FaiI YATR 5 cut(s) 14, 201, 207, 423, 438
FaqI GGGAC 1 cut(s) 300
FatI CATG 2 cut(s) 12, 199
FauI CCCGC 2 cut(s) 205, 238
Fnu4HI GCNGC 2 cut(s) 5, 115
FokI GGATG 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 5, 115
FspBI CTAG 1 cut(s) 56
GluI GCNGC 2 cut(s) 5, 115
HaeIII GGCC 3 cut(s) 157, 216, 457
HapII CCGG 1 cut(s) 173
Hin1II CATG 2 cut(s) 16, 203
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 4 cut(s) 138, 187, 323, 468
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 65, 328
HpyCH4IV ACGT 2 cut(s) 282, 307
HpyCH4V TGCA 2 cut(s) 199, 294
HpyF3I CTNAG 2 cut(s) 441, 483
HpySE526I ACGT 2 cut(s) 282, 307
Hsp92II CATG 2 cut(s) 16, 203
LpnPI CCDG 4 cut(s) 162, 186, 205, 280
Lsp1109I GCAGC 1 cut(s) 126
MaeI CTAG 1 cut(s) 56
MaeII ACGT 2 cut(s) 282, 307
MaeIII GTNAC 1 cut(s) 96
MboII GAAGA 3 cut(s) 31, 78, 151
MfeI CAATTG 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 401
MlsI TGGCCA 1 cut(s) 157
MluCI AATT 3 cut(s) 144, 289, 373
MluNI TGGCCA 1 cut(s) 157
MnlI CCTC 4 cut(s) 456, 468, 474, 486
Mox20I TGGCCA 1 cut(s) 157
MscI TGGCCA 1 cut(s) 157
MslI CAYNNNNRTG 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 157
MspI CCGG 1 cut(s) 173
MunI CAATTG 1 cut(s) 373
MvnI CGCG 1 cut(s) 212
NcoI CCATGG 1 cut(s) 12
NlaIII CATG 2 cut(s) 16, 203
NlaIV GGNNCC 1 cut(s) 398
PkrI GCNGC 2 cut(s) 6, 116
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 2 cut(s) 105, 214
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
RseI CAYNNNNRTG 1 cut(s) 204
SatI GCNGC 2 cut(s) 5, 115
Sau96I GGNCC 2 cut(s) 105, 214
SduI GDGCHC 1 cut(s) 401
SetI ASST 9 cut(s) 119, 278, 285, 299, 310, 398, 454, 478, 484
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 3 cut(s) 144, 289, 373
SsiI CCGC 3 cut(s) 212, 231, 240
SspMI CTAG 1 cut(s) 56
StyI CCWWGG 2 cut(s) 12, 452
TaiI ACGT 2 cut(s) 285, 310
TasI AATT 3 cut(s) 144, 289, 373
TseI GCWGC 2 cut(s) 4, 114
VpaK11BI GGWCC 1 cut(s) 105
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.