Prupe.8G175200_v2.0.a1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000199
Physical Location & Seq
Forward (+)
17792102 .. 17793199
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G175200.1

Sequence Viewer

Length: 915 bp
ATGGCTTCTGCCTCAGCTTTAAACCCGAAATCCAACTACCATATTCGGTCGATCAGCCTGCCTTCGAAACCACACCCTCTATTTCAGCAATGTGAAGATCATTTGTTGCGAATAGCAGCTTCTGATGCCTCCTCTTCATCCTCATATTCGTCATCTTCCATAAGCCAGAAATTGAGTGGCCTCTTGGATTTGCATAACTGTCTCAATGAGTTGTTTCAGTTGCCCCTCACCCAAGAAGCCTTTGTCCGAGAGCAAAATGAGAAGTGGGTAGATGAGCTTTTGGATGGCTCTCTTAGGCTCTTGGATGTGTGTACAGCAGCCAAGGATGCCTTGATACACACAAAGGAGTGCGCACGCGAAATCCAGTCGATCATGCGCAGAAGAAGGGGAGGCAAAAGCGGGTTCACAAATGAGGTTAGGAAATACTTAGCCTCAAGGAAGGTGGTCAAGAAGGCAGTCTGCAAGGCCCTGGGGACTTTAAGAACTTCTCAGAAAAAATCCACCTTCTCATCCACCAACAAAGACAATGTAACTGTGGCTTTGATTGGTGTGCTGAGAGAGGTTGAAGCCGTCTCTCTCACAGTGTTTGAGTCCCTTCTGTCCTTCATCTCTGGAGCAAAGTCAGCATCAAAGATGAGAGGCTGGTCTTTTGTTTCCAAGCTGATGCTCACCAAAAAAGTTGGTTGTGAGGAAGACAAAACAGAAATAAATGAATTTGCTGATGTAGATGCTGCATTGAGCTCCCTTGTGTGTCAAGAAACAAGCAACTCTGACAGCATGGTCGACAGTGAGAACGTGCAGAGTGAGCTGCAACAATTGGAAATGTGCAGTCAGGATCTAGAAGAAGGGCTCGAGTGTCTTTTCCGGCGTTTAATCAAGAATAGAGTTTCCCTCCTCAACACCCTGAGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

305

Amino Acids

33.68

Weight (kDa)

8.03

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
Acc16I TGCGCA 2 cut(s) 352, 377
AccI GTMKAC 1 cut(s) 783
AccII CGCG 1 cut(s) 357
AciI CCGC 1 cut(s) 399
AclWI GGATC 1 cut(s) 843
AcsI RAATTY 1 cut(s) 713
AfaI GTAC 1 cut(s) 313
AgsI TTSAA 1 cut(s) 566
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 6 cut(s) 17, 119, 277, 661, 741, 808
AluI AGCT 6 cut(s) 17, 119, 277, 661, 741, 808
Alw21I GWGCWC 1 cut(s) 743
Alw26I GTCTC 2 cut(s) 206, 577
AlwI GGATC 1 cut(s) 843
AlwNI CAGNNNCTG 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 851
AoxI GGCC 2 cut(s) 178, 465
ApeKI GCWGC 4 cut(s) 116, 317, 731, 808
ApoI RAATTY 1 cut(s) 713
AspLEI GCGC 2 cut(s) 353, 378
AspS9I GGNCC 1 cut(s) 466
AsuHPI GGTGA 2 cut(s) 220, 661
AsuII TTCGAA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 851
BanII GRGCYC 2 cut(s) 743, 852
BbsI GAAGAC 1 cut(s) 699
Bbv12I GWGCWC 1 cut(s) 743
BbvCI CCTCAGC 1 cut(s) 13
BbvI GCAGC 4 cut(s) 128, 329, 718, 795
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 554
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 1 cut(s) 470
BcoDI GTCTC 2 cut(s) 206, 577
BfaI CTAG 1 cut(s) 839
BisI GCNGC 4 cut(s) 117, 318, 732, 809
BlsI GCNGC 4 cut(s) 118, 319, 733, 810
Bme1390I CCNGG 1 cut(s) 470
BmeT110I CYCGRG 1 cut(s) 851
BmgT120I GGNCC 1 cut(s) 466
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 5 cut(s) 115, 316, 635, 654, 718
BpiI GAAGAC 1 cut(s) 699
BplI GAGNNNNNCTC 2 cut(s) 876, 908
BpmI CTGGAG 1 cut(s) 633
Bpu10I CCTNAGC 2 cut(s) 13, 905
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 418
BsaJI CCNNGG 3 cut(s) 321, 468, 469
Bse1I ACTGG 1 cut(s) 364
Bse3DI GCAATG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 3 cut(s) 321, 468, 469
BseGI GGATG 5 cut(s) 137, 289, 310, 331, 509
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 4 cut(s) 27, 503, 545, 896
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 2 cut(s) 121, 884
BseXI GCAGC 4 cut(s) 128, 329, 718, 795
BsgI GTGCAG 2 cut(s) 818, 847
Bsh1236I CGCG 1 cut(s) 357
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 180, 467
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 743
BsiHKCI CYCGRG 1 cut(s) 851
BsiSI CCGG 1 cut(s) 865
BslFI GGGAC 2 cut(s) 487, 577
BsmAI GTCTC 2 cut(s) 206, 577
BsmBI CGTCTC 1 cut(s) 577
BsmFI GGGAC 2 cut(s) 487, 577
BsnI GGCC 2 cut(s) 180, 467
BsoBI CYCGRG 1 cut(s) 851
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 743, 852
Bsp1407I TGTACA 1 cut(s) 311
Bsp143I GATC 4 cut(s) 51, 97, 369, 835
BspACI CCGC 1 cut(s) 399
BspANI GGCC 2 cut(s) 180, 467
BspCNI CTCAG 4 cut(s) 26, 502, 546, 897
BspFNI CGCG 1 cut(s) 357
BspPI GGATC 1 cut(s) 843
BspT104I TTCGAA 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 311
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 3 cut(s) 321, 468, 469
BssMI GATC 4 cut(s) 51, 97, 369, 835
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 4 cut(s) 200, 535, 583, 788
Bst6I CTCTTC 1 cut(s) 139
BstAUI TGTACA 1 cut(s) 311
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 59, 355
BstDEI CTNAG 6 cut(s) 13, 293, 427, 489, 554, 905
BstF5I GGATG 5 cut(s) 137, 289, 310, 331, 509
BstFNI CGCG 1 cut(s) 357
BstHHI GCGC 2 cut(s) 353, 378
BstKTI GATC 4 cut(s) 54, 100, 372, 838
BstMAI GTCTC 2 cut(s) 206, 577
BstMBI GATC 4 cut(s) 51, 97, 369, 835
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 4 cut(s) 125, 326, 623, 805
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 468
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 4 cut(s) 128, 329, 718, 795
BstV2I GAAGAC 1 cut(s) 699
BstX2I RGATCY 1 cut(s) 835
BstYI RGATCY 1 cut(s) 835
BsuRI GGCC 2 cut(s) 180, 467
BtsCI GGATG 5 cut(s) 137, 289, 310, 331, 509
BtsIMutI CAGTG 2 cut(s) 588, 793
Cac8I GCNNGC 2 cut(s) 59, 355
CaiI CAGNNNCTG 1 cut(s) 122
CfoI GCGC 2 cut(s) 353, 378
Cfr13I GGNCC 1 cut(s) 466
Csp6I GTAC 1 cut(s) 312
CspCI CAANNNNNGTGG 2 cut(s) 423, 458
CviAII CATG 2 cut(s) 373, 778
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 6 cut(s) 13, 293, 427, 489, 554, 905
DpnI GATC 4 cut(s) 53, 99, 371, 837
DpnII GATC 4 cut(s) 51, 97, 369, 835
DraI TTTAAA 1 cut(s) 21
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 741
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 2 cut(s) 743, 852
Eco53kI GAGCTC 1 cut(s) 741
Eco88I CYCGRG 1 cut(s) 851
EcoICRI GAGCTC 1 cut(s) 741
EcoO109I RGGNCCY 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 2 cut(s) 743, 852
ErhI CCWWGG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 577
FaeI CATG 2 cut(s) 376, 781
FaiI YATR 6 cut(s) 42, 145, 161, 195, 374, 779
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 2 cut(s) 487, 577
FatI CATG 2 cut(s) 372, 777
FauI CCCGC 1 cut(s) 392
FblI GTMKAC 1 cut(s) 783
Fnu4HI GCNGC 4 cut(s) 117, 318, 732, 809
FokI GGATG 5 cut(s) 124, 296, 317, 338, 496
FriOI GRGCYC 2 cut(s) 743, 852
Fsp4HI GCNGC 4 cut(s) 117, 318, 732, 809
FspAI RTGCGCAY 1 cut(s) 352
FspBI CTAG 1 cut(s) 839
FspI TGCGCA 2 cut(s) 352, 377
GlaI GCGC 2 cut(s) 352, 377
GluI GCNGC 4 cut(s) 117, 318, 732, 809
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 2 cut(s) 180, 467
HapII CCGG 1 cut(s) 865
HhaI GCGC 2 cut(s) 353, 378
Hin1II CATG 2 cut(s) 376, 781
Hin6I GCGC 2 cut(s) 351, 376
HinP1I GCGC 2 cut(s) 351, 376
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HinfI GANTC 1 cut(s) 590
HpaII CCGG 1 cut(s) 865
HphI GGTGA 2 cut(s) 220, 661
Hpy166II GTNNAC 3 cut(s) 312, 405, 784
Hpy188I TCNGA 4 cut(s) 124, 248, 492, 772
Hpy188III TCNNGA 6 cut(s) 448, 612, 755, 833, 839, 877
Hpy8I GTNNAC 3 cut(s) 312, 405, 784
HpyAV CCTTC 8 cut(s) 72, 378, 433, 445, 514, 605, 613, 839
HpyCH4III ACNGT 4 cut(s) 200, 535, 583, 788
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 6 cut(s) 193, 462, 734, 799, 811, 828
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 326, 623, 805
HpyF3I CTNAG 6 cut(s) 13, 293, 427, 489, 554, 905
HpySE526I ACGT 1 cut(s) 795
Hsp92II CATG 2 cut(s) 376, 781
HspAI GCGC 2 cut(s) 351, 376
Kzo9I GATC 4 cut(s) 51, 97, 369, 835
LmnI GCTCC 2 cut(s) 614, 746
LpnPI CCDG 9 cut(s) 71, 179, 377, 455, 482, 597, 628, 818, 878
Lsp1109I GCAGC 4 cut(s) 128, 329, 718, 795
LweI GCATC 5 cut(s) 115, 316, 635, 654, 718
MaeI CTAG 1 cut(s) 839
MaeII ACGT 1 cut(s) 795
MaeIII GTNAC 1 cut(s) 529
MalI GATC 4 cut(s) 53, 99, 371, 837
MboI GATC 4 cut(s) 51, 97, 369, 835
MboII GAAGA 6 cut(s) 107, 126, 147, 393, 704, 854
MfeI CAATTG 1 cut(s) 815
MflI RGATCY 1 cut(s) 835
MhlI GDGCHC 2 cut(s) 743, 852
MluCI AATT 3 cut(s) 170, 713, 815
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 57
MseI TTAA 3 cut(s) 20, 479, 872
MspI CCGG 1 cut(s) 865
MspR9I CCNGG 1 cut(s) 470
MunI CAATTG 1 cut(s) 815
MvaI CCWGG 1 cut(s) 470
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 4 cut(s) 125, 326, 623, 805
NdeII GATC 4 cut(s) 51, 97, 369, 835
NlaIII CATG 2 cut(s) 376, 781
NsbI TGCGCA 2 cut(s) 352, 377
NspV TTCGAA 1 cut(s) 65
PaeR7I CTCGAG 1 cut(s) 851
PasI CCCWGGG 1 cut(s) 469
PkrI GCNGC 4 cut(s) 118, 319, 733, 810
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
Psp124BI GAGCTC 1 cut(s) 743
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PspPI GGNCC 1 cut(s) 466
PspXI VCTCGAGB 1 cut(s) 851
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 835
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SacI GAGCTC 1 cut(s) 743
SalI GTCGAC 1 cut(s) 782
SaqAI TTAA 3 cut(s) 20, 479, 872
SatI GCNGC 4 cut(s) 117, 318, 732, 809
Sau3AI GATC 4 cut(s) 51, 97, 369, 835
Sau96I GGNCC 1 cut(s) 466
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 2 cut(s) 743, 852
SfaNI GCATC 5 cut(s) 115, 316, 635, 654, 718
Sfr274I CTCGAG 1 cut(s) 851
SfuI TTCGAA 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 851
SmlI CTYRAG 2 cut(s) 433, 851
SmoI CTYRAG 2 cut(s) 433, 851
Sse9I AATT 3 cut(s) 170, 713, 815
SsiI CCGC 1 cut(s) 399
SspMI CTAG 1 cut(s) 839
SstI GAGCTC 1 cut(s) 743
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 4 cut(s) 200, 535, 583, 788
TaiI ACGT 1 cut(s) 798
TaqI TCGA 5 cut(s) 50, 65, 368, 783, 852
TaqII GACCGA 1 cut(s) 36
TasI AATT 3 cut(s) 170, 713, 815
TatI WGTACW 1 cut(s) 311
Tru1I TTAA 3 cut(s) 20, 479, 872
Tru9I TTAA 3 cut(s) 20, 479, 872
TscAI CASTG 2 cut(s) 588, 793
TseI GCWGC 4 cut(s) 116, 317, 731, 808
TspDTI ATGAA 3 cut(s) 126, 595, 726
TspRI CASTG 2 cut(s) 588, 793
XapI RAATTY 1 cut(s) 713
XbaI TCTAGA 1 cut(s) 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XhoI CTCGAG 1 cut(s) 851
XmiI GTMKAC 1 cut(s) 783
XspI CTAG 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.