Rh6BG241700

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000199
Physical Location & Seq
Reverse (-)
44963280 .. 44964387
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG241700.1

Sequence Viewer

Length: 573 bp
ATGTTGGATGTTTGTAGCACTGCCAAGGATGCGATGTTGCAAACCAAGGAGTGCATACAAGAACTTCAATCAATCATTCGAAGAAGGCGTAAAGACCAATCTGGAGTGGTCACAAGTGAGGTTAGAAAATACTTAACCTTGAGGAAGACAGTGAAAAAGGCAATCCACAAGGCTTTGGGGAATCTGAAGGCAAACAGATCCACTTTCTCTTCGCTCAACAACGACCAAGAGACTATCTCCATTTTTAGCAAGCTGAGAGATGTTGAAGTAGTCACTCTCACAGTGTTGGAATCAGTGTTGTCCTTCATCTCTGGGCCAAAGTCAAAGCCTAGCAGCTGGTTTTTGGTTTCCAAGATGGTGCAGTCAAAAAGAATAGCTTGCGAGGAAGAAATGAAAGTAAACGAATTTGCACAAGTGGATGCTGCATTGAAGTCACACACGAGTTTAGACGATGCACACAACCAATTTAACAATCTGAACTCATGCATTCAAGACCAAGAAGAAGGACTCGACTGCCTATTTAGGCTATTGATCAAAACAAGAGTCTCCCTTCTCAACATCTCAAGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

190

Amino Acids

21.48

Weight (kDa)

9.13

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 1 - 187 1.1e-61 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 404
AcuI CTGAAG 1 cut(s) 206
AgsI TTSAA 4 cut(s) 68, 266, 430, 491
AluBI AGCT 3 cut(s) 253, 336, 377
AluI AGCT 3 cut(s) 253, 336, 377
Alw26I GTCTC 2 cut(s) 224, 550
AlwI GGATC 1 cut(s) 192
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 333, 422
ApoI RAATTY 1 cut(s) 404
ArsI GACNNNNNNTTYG 2 cut(s) 528, 560
AspS9I GGNCC 1 cut(s) 314
AsuII TTCGAA 1 cut(s) 79
BauI CACGAG 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 345, 409
BccI CCATC 1 cut(s) 349
BclI TGATCA 1 cut(s) 531
BcoDI GTCTC 2 cut(s) 224, 550
BfaI CTAG 2 cut(s) 330, 571
BisI GCNGC 2 cut(s) 334, 423
BlsI GCNGC 2 cut(s) 335, 424
BmgT120I GGNCC 1 cut(s) 314
BmsI GCATC 3 cut(s) 19, 409, 442
BpiI GAAGAC 1 cut(s) 152
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpmI CTGGAG 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 160, 547
BsaJI CCNNGG 2 cut(s) 24, 45
BseDI CCNNGG 2 cut(s) 24, 45
BseGI GGATG 3 cut(s) 13, 34, 424
BseMII CTCAG 1 cut(s) 245
BseXI GCAGC 2 cut(s) 345, 409
BsgI GTGCAG 1 cut(s) 380
BshFI GGCC 1 cut(s) 316
BsmAI GTCTC 2 cut(s) 224, 550
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 1 cut(s) 316
Bsp119I TTCGAA 1 cut(s) 79
Bsp143I GATC 2 cut(s) 197, 531
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 246
BspPI GGATC 1 cut(s) 192
BspT104I TTCGAA 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 24, 45
BssMI GATC 2 cut(s) 197, 531
BssSI CACGAG 1 cut(s) 439
BssT1I CCWWGG 2 cut(s) 24, 45
Bst2BI CACGAG 1 cut(s) 439
Bst4CI ACNGT 2 cut(s) 151, 283
Bst6I CTCTTC 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 251, 379
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 3 cut(s) 13, 34, 424
BstKTI GATC 2 cut(s) 200, 534
BstMAI GTCTC 2 cut(s) 224, 550
BstMBI GATC 2 cut(s) 197, 531
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 345, 409
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 1 cut(s) 316
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 3 cut(s) 13, 34, 424
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 4 cut(s) 18, 156, 288, 300
Cac8I GCNNGC 2 cut(s) 251, 379
Cfr13I GGNCC 1 cut(s) 314
CviAII CATG 1 cut(s) 483
CviJI RGCY 7 cut(s) 173, 253, 316, 328, 336, 377, 526
CviKI_1 RGCY 7 cut(s) 173, 253, 316, 328, 336, 377, 526
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 199, 533
DpnII GATC 2 cut(s) 197, 531
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 24, 45
Eco57I CTGAAG 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 24, 45
EcoT22I ATGCAT 1 cut(s) 488
ErhI CCWWGG 2 cut(s) 24, 45
FaeI CATG 1 cut(s) 486
FaiI YATR 2 cut(s) 56, 484
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FatI CATG 1 cut(s) 482
FbaI TGATCA 1 cut(s) 531
Fnu4HI GCNGC 2 cut(s) 334, 423
FokI GGATG 3 cut(s) 20, 41, 431
Fsp4HI GCNGC 2 cut(s) 334, 423
FspBI CTAG 2 cut(s) 330, 571
GluI GCNGC 2 cut(s) 334, 423
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 1 cut(s) 316
Hin1II CATG 1 cut(s) 486
HinfI GANTC 4 cut(s) 181, 290, 507, 543
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 2 cut(s) 186, 477
Hpy188III TCNNGA 2 cut(s) 102, 491
Hpy8I GTNNAC 1 cut(s) 400
HpyAV CCTTC 5 cut(s) 78, 181, 313, 497, 560
HpyCH4III ACNGT 2 cut(s) 151, 283
HpyCH4V TGCA 7 cut(s) 40, 54, 361, 410, 425, 455, 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 1 cut(s) 486
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 2 cut(s) 197, 531
LpnPI CCDG 3 cut(s) 87, 297, 322
Lsp1109I GCAGC 2 cut(s) 345, 409
LweI GCATC 3 cut(s) 19, 409, 442
MaeI CTAG 2 cut(s) 330, 571
MaeIII GTNAC 4 cut(s) 109, 271, 432, 566
MalI GATC 2 cut(s) 199, 533
MboI GATC 2 cut(s) 197, 531
MboII GAAGA 5 cut(s) 93, 157, 201, 398, 512
MflI RGATCY 1 cut(s) 197
MluCI AATT 2 cut(s) 404, 464
MlyI GAGTC 2 cut(s) 501, 552
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 3 cut(s) 112, 135, 376
Mph1103I ATGCAT 1 cut(s) 488
MseI TTAA 2 cut(s) 134, 468
MspA1I CMGCKG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 486
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 2 cut(s) 197, 531
NlaIII CATG 1 cut(s) 486
NmuCI GTSAC 4 cut(s) 109, 271, 432, 566
NsiI ATGCAT 1 cut(s) 488
NspV TTCGAA 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 85
PctI GAATGC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 181, 290
PkrI GCNGC 2 cut(s) 335, 424
PleI GAGTC 2 cut(s) 501, 551
PpsI GAGTC 2 cut(s) 501, 551
PspPI GGNCC 1 cut(s) 314
PsuI RGATCY 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 336
SaqAI TTAA 2 cut(s) 134, 468
SatI GCNGC 2 cut(s) 334, 423
Sau3AI GATC 2 cut(s) 197, 531
Sau96I GGNCC 1 cut(s) 314
SchI GAGTC 2 cut(s) 501, 552
SetI ASST 5 cut(s) 123, 140, 255, 338, 379
SfaNI GCATC 3 cut(s) 19, 409, 442
SfuI TTCGAA 1 cut(s) 79
SmlI CTYRAG 2 cut(s) 139, 562
SmoI CTYRAG 2 cut(s) 139, 562
Sse9I AATT 2 cut(s) 404, 464
SspMI CTAG 2 cut(s) 330, 571
StyI CCWWGG 2 cut(s) 24, 45
TaaI ACNGT 2 cut(s) 151, 283
TaqI TCGA 2 cut(s) 79, 510
TasI AATT 2 cut(s) 404, 464
TfiI GAWTC 2 cut(s) 181, 290
Tru1I TTAA 2 cut(s) 134, 468
Tru9I TTAA 2 cut(s) 134, 468
TscAI CASTG 4 cut(s) 25, 156, 288, 300
TseFI GTSAC 4 cut(s) 109, 271, 432, 566
TseI GCWGC 2 cut(s) 333, 422
Tsp45I GTSAC 4 cut(s) 109, 271, 432, 566
TspDTI ATGAA 2 cut(s) 295, 407
TspRI CASTG 4 cut(s) 25, 156, 288, 300
XapI RAATTY 1 cut(s) 404
XspI CTAG 2 cut(s) 330, 571
Zsp2I ATGCAT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.