MD05G1131200.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000199
Physical Location & Seq
Reverse (-)
25632823 .. 25633107
285 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1131200.v1.1.491

Sequence Viewer

Length: 285 bp
ATGCGCAGAAGATGGGGAGATGGCAGGAGCTTCATGAGTGAGGTTAAAAAATACCTTAGCTCTAGGAAGGATGTCAAGAAGGCAATTAACAGGGCCTTAAAGGTCAAGGAAAGTCAAGACAAGAACCATGAGACTCCAGCTGCTGTCAACTTGTTGAAAGAGCTAGACACAGTCACCTTCGCCGTGTTTGACTCCTTCTTGTCCTTTGTAGCTGGTTCAAAGTCAAATTCAACCACTTGGCCATTCGTTTCCAAGCTGGTGCAACCTAAAAAGAGTAGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

95

Amino Acids

10.68

Weight (kDa)

10.24

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 1 - 90 8.1e-18 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 239
AcsI RAATTY 1 cut(s) 226
AgsI TTSAA 3 cut(s) 157, 219, 231
AluBI AGCT 7 cut(s) 30, 60, 140, 163, 212, 256, 279
AluI AGCT 7 cut(s) 30, 60, 140, 163, 212, 256, 279
Alw26I GTCTC 1 cut(s) 125
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 2 cut(s) 93, 239
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 226
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 166
BalI TGGCCA 1 cut(s) 241
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 6, 14
BceAI ACGGC 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 2 cut(s) 63, 164
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 120
Bpu10I CCTNAGC 1 cut(s) 56
BseGI GGATG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 127
BshFI GGCC 2 cut(s) 95, 241
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 2 cut(s) 95, 241
BspANI GGCC 2 cut(s) 95, 241
BspHI TCATGA 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 76
BstHHI GCGC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 127
BsuRI GGCC 2 cut(s) 95, 241
BtsCI GGATG 1 cut(s) 76
CaiI CAGNNNCTG 1 cut(s) 143
CciI TCATGA 1 cut(s) 33
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 93
CviAII CATG 2 cut(s) 34, 128
CviJI RGCY 9 cut(s) 30, 60, 95, 140, 163, 212, 241, 256, 279
CviKI_1 RGCY 9 cut(s) 30, 60, 95, 140, 163, 212, 241, 256, 279
DdeI CTNAG 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 93
FaeI CATG 2 cut(s) 37, 131
FaiI YATR 2 cut(s) 35, 129
FalI AAGNNNNNCTT 1 cut(s) 263
FatI CATG 2 cut(s) 33, 127
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 63, 164
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 2 cut(s) 95, 241
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 37, 131
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 133, 191
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 34, 76, 116
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 4 cut(s) 61, 73, 187, 205
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 262
HpyF3I CTNAG 1 cut(s) 56
Hsp92II CATG 2 cut(s) 37, 131
HspAI GCGC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 5 cut(s) 10, 76, 150, 198, 242
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 2 cut(s) 63, 164
MaeIII GTNAC 1 cut(s) 172
MboII GAAGA 1 cut(s) 21
MlsI TGGCCA 1 cut(s) 241
MluCI AATT 2 cut(s) 84, 226
MluNI TGGCCA 1 cut(s) 241
MlyI GAGTC 2 cut(s) 127, 185
MnlI CCTC 1 cut(s) 34
Mox20I TGGCCA 1 cut(s) 241
MscI TGGCCA 1 cut(s) 241
MseI TTAA 3 cut(s) 45, 87, 98
Msp20I TGGCCA 1 cut(s) 241
MspA1I CMGCKG 1 cut(s) 140
NlaIII CATG 2 cut(s) 37, 131
NmuCI GTSAC 1 cut(s) 172
NsbI TGCGCA 1 cut(s) 5
PagI TCATGA 1 cut(s) 33
PflFI GACNNNGTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 2 cut(s) 127, 185
PpsI GAGTC 2 cut(s) 127, 185
PspPI GGNCC 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 140
SaqAI TTAA 3 cut(s) 45, 87, 98
SatI GCNGC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 93
SchI GAGTC 2 cut(s) 127, 185
Sse9I AATT 2 cut(s) 84, 226
SspMI CTAG 2 cut(s) 63, 164
TaaI ACNGT 1 cut(s) 172
TasI AATT 2 cut(s) 84, 226
Tru1I TTAA 3 cut(s) 45, 87, 98
Tru9I TTAA 3 cut(s) 45, 87, 98
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 22
Tth111I GACNNNGTC 1 cut(s) 170
XapI RAATTY 1 cut(s) 226
XspI CTAG 2 cut(s) 63, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.