Rh6AG237800

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000199
Physical Location & Seq
Reverse (-)
42315837 .. 42316652
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG237800.1

Sequence Viewer

Length: 816 bp
ATGGCTTCCCACACTCGCTCTAACAGCTTCCCCTCCAGGCCACACCCTATCATTGAAGAAGCTAGTGAACAATTGTGTAGATTGAGGTCTTCTGCAGCCACCTCAATATCTTCATCATCAATAAGCCACAAACTAAGTGGTCTAGAAAACTTGCATGATTGTGTTGAAAGGCTGCTTCAGTTGCCCCTCAATCAACAAGCTTTAGCACAAGAGAAATATCAGAAATGCACTAATGAGCTATTGGATGGTTCCCTCAGACTCTTGGATTTTTGTAGCATTGCCAAGGAAGCCCTGCAGCAAACGAAGGAATGCTTACAGGATCTTCAATCGATCATAAGAAGACGAGGATGCGAATCTGGAGTACTTACAAGTGAGGTTAGGAGATACTTGGCCTCCAGGAAGATGGTGAAAAAGACAATCCAAAAGGCTGTGGTCAATACCAGATCCTCTTTCTCTTCACTCAACAAGGAGACGGAATCTATTTCCATTGTTAACATGTTAAGAAATGTAGAAGCAATTACTCTTACAGTGTTTGAATCACTGTTGTCCTTCATCTTGGGGCCAAAGGCATCAAGCAGCTGGTCATTGGTATCAAAGATGATGCAGTCAAAAAGAGTAGCTTGTGAGGAAGAAGCAGAAATAAATGAATTCGCAGAGGTAGATGCTGCATTGAAGTCACCCAAGAGTGCAGACAGTGTACAGAACCAGCTTAACAATCTGGAGTCATGCATCCAAGATCAAGAAGAAGGACTCGAGAGCCTATTTAGGCAATTGATCAAAACTAGAGTCTCCCTTCTCAACATCCTCAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

271

Amino Acids

30.31

Weight (kDa)

7.57

Isoelectric Point (pI)

72.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 268 9.2e-78 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 327, 438
AcsI RAATTY 1 cut(s) 647
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 2 cut(s) 363, 699
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 5 cut(s) 56, 167, 326, 536, 673
AjnI CCWGG 2 cut(s) 35, 395
AluBI AGCT 7 cut(s) 27, 62, 200, 238, 579, 620, 709
AluI AGCT 7 cut(s) 27, 62, 200, 238, 579, 620, 709
Alw26I GTCTC 2 cut(s) 464, 793
AlwI GGATC 2 cut(s) 327, 438
Ama87I CYCGRG 1 cut(s) 752
AoxI GGCC 3 cut(s) 38, 390, 560
ApeKI GCWGC 5 cut(s) 95, 172, 295, 576, 665
ApoI RAATTY 1 cut(s) 647
ArsI GACNNNNNNTTYG 2 cut(s) 771, 803
AspS9I GGNCC 1 cut(s) 560
AsuHPI GGTGA 2 cut(s) 418, 669
AvaI CYCGRG 1 cut(s) 752
BbsI GAAGAC 2 cut(s) 81, 346
BbvI GCAGC 5 cut(s) 107, 159, 307, 588, 652
BccI CCATC 2 cut(s) 239, 397
BciT130I CCWGG 2 cut(s) 37, 397
BclI TGATCA 1 cut(s) 774
BcoDI GTCTC 2 cut(s) 464, 793
BfaI CTAG 4 cut(s) 63, 143, 783, 814
BfmI CTRYAG 2 cut(s) 93, 293
BisI GCNGC 5 cut(s) 96, 173, 296, 577, 666
BlsI GCNGC 5 cut(s) 97, 174, 297, 578, 667
BmcAI AGTACT 1 cut(s) 363
Bme1390I CCNGG 2 cut(s) 37, 397
BmeT110I CYCGRG 1 cut(s) 752
BmgT120I GGNCC 1 cut(s) 560
BmiI GGNNCC 2 cut(s) 250, 561
BmrFI CCNGG 2 cut(s) 37, 397
BmsI GCATC 5 cut(s) 338, 578, 591, 652, 738
BpiI GAAGAC 2 cut(s) 81, 346
BpmI CTGGAG 4 cut(s) 19, 378, 379, 740
Bsa29I ATCGAT 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bse3DI GCAATG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 352
BseBI CCWGG 2 cut(s) 37, 397
BseCI ATCGAT 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 4 cut(s) 250, 353, 729, 801
BseJI GATNNNNATC 1 cut(s) 352
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 268
BseXI GCAGC 5 cut(s) 107, 159, 307, 588, 652
BsgI GTGCAG 1 cut(s) 708
BshFI GGCC 3 cut(s) 40, 392, 562
BshVI ATCGAT 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 752
BsmAI GTCTC 2 cut(s) 464, 793
BsmBI CGTCTC 1 cut(s) 464
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 3 cut(s) 40, 392, 562
BsoBI CYCGRG 1 cut(s) 752
Bsp1407I TGTACA 1 cut(s) 697
Bsp143I GATC 5 cut(s) 319, 330, 443, 736, 774
BspANI GGCC 3 cut(s) 40, 392, 562
BspCNI CTCAG 1 cut(s) 267
BspDI ATCGAT 1 cut(s) 329
BspLI GGNNCC 2 cut(s) 250, 561
BspMAI CTGCAG 2 cut(s) 97, 297
BspPI GGATC 2 cut(s) 327, 438
BsrDI GCAATG 1 cut(s) 276
BsrGI TGTACA 1 cut(s) 697
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 5 cut(s) 319, 330, 443, 736, 774
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 37, 397
Bst4CI ACNGT 3 cut(s) 529, 543, 695
Bst6I CTCTTC 1 cut(s) 460
BstAUI TGTACA 1 cut(s) 697
BstDEI CTNAG 2 cut(s) 134, 254
BstF5I GGATG 4 cut(s) 250, 353, 729, 801
BstKTI GATC 5 cut(s) 322, 333, 446, 739, 777
BstMAI GTCTC 2 cut(s) 464, 793
BstMBI GATC 5 cut(s) 319, 330, 443, 736, 774
BstMWI GCNNNNNNNGC 3 cut(s) 24, 181, 287
BstNI CCWGG 2 cut(s) 37, 397
BstNSI RCATGY 1 cut(s) 499
BstSCI CCNGG 2 cut(s) 35, 395
BstSFI CTRYAG 2 cut(s) 93, 293
BstV1I GCAGC 5 cut(s) 107, 159, 307, 588, 652
BstV2I GAAGAC 2 cut(s) 81, 346
BstX2I RGATCY 2 cut(s) 319, 443
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 2 cut(s) 319, 443
Bsu15I ATCGAT 1 cut(s) 329
BsuRI GGCC 3 cut(s) 40, 392, 562
BsuTUI ATCGAT 1 cut(s) 329
BtsCI GGATG 4 cut(s) 250, 353, 729, 801
BtsIMutI CAGTG 3 cut(s) 534, 539, 700
Cfr13I GGNCC 1 cut(s) 560
ClaI ATCGAT 1 cut(s) 329
Csp6I GTAC 2 cut(s) 362, 698
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 3 cut(s) 155, 496, 726
CviQI GTAC 2 cut(s) 362, 698
DdeI CTNAG 2 cut(s) 134, 254
DpnI GATC 5 cut(s) 321, 332, 445, 738, 776
DpnII GATC 5 cut(s) 319, 330, 443, 736, 774
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 752
EcoRI GAATTC 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 35, 395
EcoT14I CCWWGG 1 cut(s) 282
EcoT22I ATGCAT 1 cut(s) 731
ErhI CCWWGG 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 464
FaeI CATG 3 cut(s) 158, 499, 729
FaiI YATR 4 cut(s) 156, 335, 497, 727
FalI AAGNNNNNCTT 4 cut(s) 296, 328, 604, 636
FatI CATG 3 cut(s) 154, 495, 725
FbaI TGATCA 1 cut(s) 774
Fnu4HI GCNGC 5 cut(s) 96, 173, 296, 577, 666
FokI GGATG 4 cut(s) 257, 360, 716, 788
Fsp4HI GCNGC 5 cut(s) 96, 173, 296, 577, 666
FspBI CTAG 4 cut(s) 63, 143, 783, 814
GluI GCNGC 5 cut(s) 96, 173, 296, 577, 666
GsuI CTGGAG 4 cut(s) 19, 378, 379, 740
HaeIII GGCC 3 cut(s) 40, 392, 562
Hin1II CATG 3 cut(s) 158, 499, 729
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HindIII AAGCTT 1 cut(s) 198
HinfI GANTC 7 cut(s) 258, 353, 476, 536, 722, 750, 786
HpaI GTTAAC 1 cut(s) 493
HphI GGTGA 2 cut(s) 418, 669
Hpy166II GTNNAC 3 cut(s) 68, 493, 698
Hpy188I TCNGA 2 cut(s) 222, 257
Hpy188III TCNNGA 5 cut(s) 143, 357, 719, 740, 754
Hpy8I GTNNAC 3 cut(s) 68, 493, 698
HpyAV CCTTC 4 cut(s) 298, 559, 740, 803
HpyCH4III ACNGT 3 cut(s) 529, 543, 695
HpyCH4V TGCA 8 cut(s) 95, 154, 228, 295, 604, 668, 689, 729
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 181, 287
HpyF3I CTNAG 2 cut(s) 134, 254
Hsp92II CATG 3 cut(s) 158, 499, 729
Ksp22I TGATCA 1 cut(s) 774
KspAI GTTAAC 1 cut(s) 493
Kzo9I GATC 5 cut(s) 319, 330, 443, 736, 774
Lsp1109I GCAGC 5 cut(s) 107, 159, 307, 588, 652
LweI GCATC 5 cut(s) 338, 578, 591, 652, 738
MaeI CTAG 4 cut(s) 63, 143, 783, 814
MaeIII GTNAC 1 cut(s) 675
MalI GATC 5 cut(s) 321, 332, 445, 738, 776
MboI GATC 5 cut(s) 319, 330, 443, 736, 774
MboII GAAGA 9 cut(s) 68, 81, 102, 314, 351, 412, 447, 641, 755
MfeI CAATTG 2 cut(s) 71, 770
MflI RGATCY 2 cut(s) 319, 443
MluCI AATT 4 cut(s) 71, 516, 647, 770
MlyI GAGTC 4 cut(s) 252, 731, 744, 795
Mph1103I ATGCAT 1 cut(s) 731
MseI TTAA 3 cut(s) 492, 500, 711
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 579
MspR9I CCNGG 2 cut(s) 37, 397
MunI CAATTG 2 cut(s) 71, 770
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 2 cut(s) 37, 397
MwoI GCNNNNNNNGC 3 cut(s) 24, 181, 287
NdeII GATC 5 cut(s) 319, 330, 443, 736, 774
NlaIII CATG 3 cut(s) 158, 499, 729
NlaIV GGNNCC 2 cut(s) 250, 561
NmuCI GTSAC 1 cut(s) 675
NsiI ATGCAT 1 cut(s) 731
NspI RCATGY 1 cut(s) 499
PaeR7I CTCGAG 1 cut(s) 752
PciI ACATGT 1 cut(s) 495
PctI GAATGC 1 cut(s) 314
PfeI GAWTC 3 cut(s) 353, 476, 536
PfoI TCCNGGA 1 cut(s) 395
PkrI GCNGC 5 cut(s) 97, 174, 297, 578, 667
PleI GAGTC 4 cut(s) 252, 730, 744, 794
PpsI GAGTC 4 cut(s) 252, 730, 744, 794
PscI ACATGT 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 35, 395
PspGI CCWGG 2 cut(s) 35, 395
PspN4I GGNNCC 2 cut(s) 250, 561
PspPI GGNCC 1 cut(s) 560
PstI CTGCAG 2 cut(s) 97, 297
PsuI RGATCY 2 cut(s) 319, 443
PvuII CAGCTG 1 cut(s) 579
RsaI GTAC 2 cut(s) 363, 699
RsaNI GTAC 2 cut(s) 362, 698
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 3 cut(s) 492, 500, 711
SatI GCNGC 5 cut(s) 96, 173, 296, 577, 666
Sau3AI GATC 5 cut(s) 319, 330, 443, 736, 774
Sau96I GGNCC 1 cut(s) 560
ScaI AGTACT 1 cut(s) 363
SchI GAGTC 4 cut(s) 252, 731, 744, 795
ScrFI CCNGG 2 cut(s) 37, 397
SfaNI GCATC 5 cut(s) 338, 578, 591, 652, 738
SfcI CTRYAG 2 cut(s) 93, 293
Sfr274I CTCGAG 1 cut(s) 752
SlaI CTCGAG 1 cut(s) 752
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 4 cut(s) 71, 516, 647, 770
SspMI CTAG 4 cut(s) 63, 143, 783, 814
StyD4I CCNGG 2 cut(s) 35, 395
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 3 cut(s) 529, 543, 695
TaqI TCGA 2 cut(s) 329, 753
TasI AATT 4 cut(s) 71, 516, 647, 770
TatI WGTACW 2 cut(s) 361, 697
TfiI GAWTC 3 cut(s) 353, 476, 536
Tru1I TTAA 3 cut(s) 492, 500, 711
Tru9I TTAA 3 cut(s) 492, 500, 711
TscAI CASTG 3 cut(s) 534, 546, 700
TseFI GTSAC 1 cut(s) 675
TseI GCWGC 5 cut(s) 95, 172, 295, 576, 665
Tsp45I GTSAC 1 cut(s) 675
TspDTI ATGAA 3 cut(s) 102, 541, 660
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 3 cut(s) 534, 546, 700
XapI RAATTY 1 cut(s) 647
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 1 cut(s) 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 752
XspI CTAG 4 cut(s) 63, 143, 783, 814
ZrmI AGTACT 1 cut(s) 363
Zsp2I ATGCAT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.