FvH4_2g16230

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000199
Physical Location & Seq
Reverse (-)
14190096 .. 14191109
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16230.t1

Sequence Viewer

Length: 846 bp
ATGGCTTACCACACTCGCTCTAACAGCTTCCCCTCCAGGCCACACCCTCTTTTTCAAGAAGTTGATGAACATTTGTGCCGATTGAGATCTTCTTCTGAAGCCACATCCACATCTTCATCAACAATAAGCCACAAGCTAAATGGTCTGCAAGACATGTATGGTTGTGTTGATAGGTTGCTTCAATTGCCACTCACCCAACAATCCCTAGCCCAAGAGAAGCATGAAACAATGGTTACTGAGCTATTAGATGGATCTCTCAGGGTCTTGGATGTTTGTAGTAGTGCCAAGGATTCCCTTCTTCAAACCAAGGAGTGCATACAAGATCTTCTATCAATCATTCGAAGAAGGCGTGCAGAAGAATCCGGAGTACTCACAACTGAGGTCAGGAAACACTTAACCTCCCGGAAGACAGTGAAAAAGGTACTCCACAAGGCTTTGGAGAACCTGAAGGCAACAGCAAACAGATCCACTTTCTCTTCCATCCACAAGGAACAAGAGACTAATCGGACTATCGCCATTGTTAAAAAGTTAAGAGACGTTGAAGCAGTCACAGTCACCGTGTTTGAATCAGTGCTGTCCTTTATCTCTGGGCCAAAGTCCAAGCCTAGCAGCTGGTCATTGGTTTCCAAGATAGTGCAATCGAAGAAAGTAGCTTGTGACGAAGAAGAAAAAGTAAATGAATTTGTAGACCTGGATGCTGCATTGAAGTCAGTCAAGAGTGCAAACAGTGCACAGTGCCAGCTTAACAATCTGGAGTCGTGCATTCAAGACTTAGAAGAAGGACTTGAGTGCCTATTTCGGCAATTAATCAAAACGAGAGTCTCTCTTCTCAACAGCCTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

282

Amino Acids

31.5

Weight (kDa)

8.57

Isoelectric Point (pI)

57.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 45 - 278 1.2e-79 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 687
AccIII TCCGGA 1 cut(s) 362
AclWI GGATC 2 cut(s) 259, 459
AcsI RAATTY 1 cut(s) 680
AcuI CTGAAG 2 cut(s) 117, 467
AfaI GTAC 2 cut(s) 369, 423
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 7 cut(s) 56, 182, 302, 542, 566, 706, 767
AjnI CCWGG 2 cut(s) 35, 690
AluBI AGCT 6 cut(s) 27, 136, 241, 612, 653, 742
AluI AGCT 6 cut(s) 27, 136, 241, 612, 653, 742
Alw21I GWGCWC 1 cut(s) 733
Alw26I GTCTC 3 cut(s) 491, 528, 826
Alw44I GTGCAC 1 cut(s) 729
AlwI GGATC 2 cut(s) 259, 459
Aor13HI TCCGGA 1 cut(s) 362
AoxI GGCC 2 cut(s) 38, 590
ApaLI GTGCAC 1 cut(s) 729
ApeKI GCWGC 2 cut(s) 609, 698
ApoI RAATTY 1 cut(s) 680
ArsI GACNNNNNNTTYG 2 cut(s) 804, 836
AseI ATTAAT 1 cut(s) 806
AspS9I GGNCC 1 cut(s) 590
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 184, 547
AsuII TTCGAA 1 cut(s) 340
BaeGI GKGCMC 1 cut(s) 733
BbsI GAAGAC 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 733
BbvI GCAGC 2 cut(s) 621, 685
BccI CCATC 2 cut(s) 242, 488
BciT130I CCWGG 2 cut(s) 37, 692
BcnI CCSGG 1 cut(s) 403
BcoDI GTCTC 3 cut(s) 491, 528, 826
BfaI CTAG 3 cut(s) 206, 606, 844
BglII AGATCT 2 cut(s) 86, 322
BisI GCNGC 2 cut(s) 610, 699
BlsI GCNGC 2 cut(s) 611, 700
BmcAI AGTACT 1 cut(s) 369
Bme1390I CCNGG 3 cut(s) 37, 403, 692
BmgT120I GGNCC 1 cut(s) 590
BmrFI CCNGG 3 cut(s) 37, 403, 692
BmsI GCATC 1 cut(s) 685
BpiI GAAGAC 1 cut(s) 413
BplI GAGNNNNNCTC 2 cut(s) 808, 840
BpmI CTGGAG 2 cut(s) 19, 773
Bpu14I TTCGAA 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 806
BpuMI CCSGG 1 cut(s) 403
BsaBI GATNNNNATC 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 285, 306
BsaWI WCCGGW 1 cut(s) 362
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bse8I GATNNNNATC 1 cut(s) 85
BseAI TCCGGA 1 cut(s) 362
BseBI CCWGG 2 cut(s) 37, 692
BseDI CCNNGG 2 cut(s) 285, 306
BseGI GGATG 4 cut(s) 104, 274, 480, 700
BseJI GATNNNNATC 1 cut(s) 85
BseMII CTCAG 3 cut(s) 228, 271, 369
BseSI GKGCMC 1 cut(s) 733
BseXI GCAGC 2 cut(s) 621, 685
BsgI GTGCAG 1 cut(s) 372
BshFI GGCC 2 cut(s) 40, 592
BsiHKAI GWGCWC 1 cut(s) 733
BsiSI CCGG 2 cut(s) 363, 403
BsmAI GTCTC 3 cut(s) 491, 528, 826
BsmBI CGTCTC 1 cut(s) 528
BsmI GAATGC 1 cut(s) 762
BsnI GGCC 2 cut(s) 40, 592
Bsp119I TTCGAA 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 733
Bsp13I TCCGGA 1 cut(s) 362
Bsp143I GATC 4 cut(s) 86, 251, 322, 464
BspANI GGCC 2 cut(s) 40, 592
BspCNI CTCAG 3 cut(s) 229, 270, 370
BspEI TCCGGA 1 cut(s) 362
BspPI GGATC 2 cut(s) 259, 459
BspT104I TTCGAA 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 285, 306
BssMI GATC 4 cut(s) 86, 251, 322, 464
BssT1I CCWWGG 2 cut(s) 285, 306
Bst2UI CCWGG 2 cut(s) 37, 692
Bst4CI ACNGT 5 cut(s) 412, 553, 559, 728, 735
Bst6I CTCTTC 2 cut(s) 481, 831
BstAPI GCANNNNNTGC 1 cut(s) 728
BstBI TTCGAA 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 351, 740
BstDEI CTNAG 4 cut(s) 237, 257, 378, 772
BstF5I GGATG 4 cut(s) 104, 274, 480, 700
BstKTI GATC 4 cut(s) 89, 254, 325, 467
BstMAI GTCTC 3 cut(s) 491, 528, 826
BstMBI GATC 4 cut(s) 86, 251, 322, 464
BstMWI GCNNNNNNNGC 3 cut(s) 24, 184, 728
BstNI CCWGG 2 cut(s) 37, 692
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 3 cut(s) 35, 401, 690
BstSLI GKGCMC 1 cut(s) 733
BstV1I GCAGC 2 cut(s) 621, 685
BstV2I GAAGAC 1 cut(s) 413
BstX2I RGATCY 4 cut(s) 86, 251, 322, 464
BstYI RGATCY 4 cut(s) 86, 251, 322, 464
BsuRI GGCC 2 cut(s) 40, 592
BtsCI GGATG 4 cut(s) 104, 274, 480, 700
BtsIMutI CAGTG 4 cut(s) 417, 576, 733, 740
Cac8I GCNNGC 2 cut(s) 351, 740
Cfr13I GGNCC 1 cut(s) 590
Csp6I GTAC 2 cut(s) 368, 422
CviAII CATG 2 cut(s) 154, 221
CviQI GTAC 2 cut(s) 368, 422
DdeI CTNAG 4 cut(s) 237, 257, 378, 772
DpnI GATC 4 cut(s) 88, 253, 324, 466
DpnII GATC 4 cut(s) 86, 251, 322, 464
Eam1104I CTCTTC 2 cut(s) 481, 831
EarI CTCTTC 2 cut(s) 481, 831
Eco130I CCWWGG 2 cut(s) 285, 306
Eco57I CTGAAG 2 cut(s) 117, 467
EcoRII CCWGG 2 cut(s) 35, 690
EcoT14I CCWWGG 2 cut(s) 285, 306
ErhI CCWWGG 2 cut(s) 285, 306
Esp3I CGTCTC 1 cut(s) 528
FaeI CATG 2 cut(s) 157, 224
FaiI YATR 4 cut(s) 155, 159, 222, 317
FalI AAGNNNNNCTT 2 cut(s) 768, 800
FatI CATG 2 cut(s) 153, 220
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 2 cut(s) 610, 699
FokI GGATG 4 cut(s) 91, 281, 467, 707
Fsp4HI GCNGC 2 cut(s) 610, 699
FspBI CTAG 3 cut(s) 206, 606, 844
GluI GCNGC 2 cut(s) 610, 699
GsuI CTGGAG 2 cut(s) 19, 773
HaeIII GGCC 2 cut(s) 40, 592
HapII CCGG 2 cut(s) 363, 403
Hin1II CATG 2 cut(s) 157, 224
HinfI GANTC 5 cut(s) 290, 359, 566, 755, 819
HpaII CCGG 2 cut(s) 363, 403
HphI GGTGA 2 cut(s) 184, 547
Hpy166II GTNNAC 2 cut(s) 688, 731
Hpy188I TCNGA 2 cut(s) 97, 507
Hpy188III TCNNGA 6 cut(s) 56, 363, 385, 715, 752, 767
Hpy8I GTNNAC 2 cut(s) 688, 731
HpyAV CCTTC 4 cut(s) 305, 339, 442, 773
HpyCH4III ACNGT 5 cut(s) 412, 553, 559, 728, 735
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 8 cut(s) 148, 315, 353, 637, 701, 722, 731, 762
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 184, 728
HpyF3I CTNAG 4 cut(s) 237, 257, 378, 772
HpySE526I ACGT 1 cut(s) 537
Hsp92II CATG 2 cut(s) 157, 224
Kpn2I TCCGGA 1 cut(s) 362
Kzo9I GATC 4 cut(s) 86, 251, 322, 464
Lsp1109I GCAGC 2 cut(s) 621, 685
LweI GCATC 1 cut(s) 685
MaeI CTAG 3 cut(s) 206, 606, 844
MaeII ACGT 1 cut(s) 537
MaeIII GTNAC 4 cut(s) 232, 547, 553, 656
MalI GATC 4 cut(s) 88, 253, 324, 466
MboI GATC 4 cut(s) 86, 251, 322, 464
MfeI CAATTG 1 cut(s) 182
MflI RGATCY 4 cut(s) 86, 251, 322, 464
MhlI GDGCHC 1 cut(s) 733
MluCI AATT 3 cut(s) 182, 680, 803
MlyI GAGTC 2 cut(s) 764, 828
MnlI CCTC 4 cut(s) 43, 57, 373, 409
MroI TCCGGA 1 cut(s) 362
MseI TTAA 5 cut(s) 395, 522, 530, 744, 806
MspA1I CMGCKG 1 cut(s) 612
MspI CCGG 2 cut(s) 363, 403
MspR9I CCNGG 3 cut(s) 37, 403, 692
MunI CAATTG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 762
MvaI CCWGG 2 cut(s) 37, 692
MwoI GCNNNNNNNGC 3 cut(s) 24, 184, 728
NciI CCSGG 1 cut(s) 403
NdeII GATC 4 cut(s) 86, 251, 322, 464
NlaIII CATG 2 cut(s) 157, 224
NmuCI GTSAC 3 cut(s) 547, 553, 656
NspI RCATGY 1 cut(s) 157
NspV TTCGAA 1 cut(s) 340
PciI ACATGT 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 346
PctI GAATGC 1 cut(s) 762
PfeI GAWTC 3 cut(s) 290, 359, 566
PfoI TCCNGGA 1 cut(s) 401
PkrI GCNGC 2 cut(s) 611, 700
PleI GAGTC 2 cut(s) 763, 827
PpsI GAGTC 2 cut(s) 763, 827
PscI ACATGT 1 cut(s) 153
PshBI ATTAAT 1 cut(s) 806
Psp6I CCWGG 2 cut(s) 35, 690
PspGI CCWGG 2 cut(s) 35, 690
PspPI GGNCC 1 cut(s) 590
PsuI RGATCY 4 cut(s) 86, 251, 322, 464
PvuII CAGCTG 1 cut(s) 612
RsaI GTAC 2 cut(s) 369, 423
RsaNI GTAC 2 cut(s) 368, 422
SaqAI TTAA 5 cut(s) 395, 522, 530, 744, 806
SatI GCNGC 2 cut(s) 610, 699
Sau3AI GATC 4 cut(s) 86, 251, 322, 464
Sau96I GGNCC 1 cut(s) 590
ScaI AGTACT 1 cut(s) 369
SchI GAGTC 2 cut(s) 764, 828
ScrFI CCNGG 3 cut(s) 37, 403, 692
SduI GDGCHC 1 cut(s) 733
SfaNI GCATC 1 cut(s) 685
SfuI TTCGAA 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 3 cut(s) 182, 680, 803
SspMI CTAG 3 cut(s) 206, 606, 844
StyD4I CCNGG 3 cut(s) 35, 401, 690
StyI CCWWGG 2 cut(s) 285, 306
TaaI ACNGT 5 cut(s) 412, 553, 559, 728, 735
TaiI ACGT 1 cut(s) 540
TaqI TCGA 2 cut(s) 340, 641
TasI AATT 3 cut(s) 182, 680, 803
TatI WGTACW 1 cut(s) 367
TfiI GAWTC 3 cut(s) 290, 359, 566
Tru1I TTAA 5 cut(s) 395, 522, 530, 744, 806
Tru9I TTAA 5 cut(s) 395, 522, 530, 744, 806
TscAI CASTG 4 cut(s) 417, 576, 733, 740
TseFI GTSAC 3 cut(s) 547, 553, 656
TseI GCWGC 2 cut(s) 609, 698
Tsp45I GTSAC 3 cut(s) 547, 553, 656
TspDTI ATGAA 4 cut(s) 81, 105, 237, 693
TspRI CASTG 4 cut(s) 417, 576, 733, 740
VneI GTGCAC 1 cut(s) 729
VspI ATTAAT 1 cut(s) 806
XapI RAATTY 1 cut(s) 680
XceI RCATGY 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 687
XspI CTAG 3 cut(s) 206, 606, 844
ZrmI AGTACT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.