FvH4_2g16204

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000199
Physical Location & Seq
Reverse (-)
14174323 .. 14176452
2130 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16204.t1

Sequence Viewer

Length: 585 bp
ATGGGACTTGTTCAAATTCAAATGTCATGGTTGTCAAGATTCCAATTGTCTCTAGGAGCTACTCCCAAACCTTGGAATTCCAAGGACTTGATTGATTCCCACACGTTTCAAGGAGTAAACATAAGAAGGTTGCTTCAATTGCCACCTACCCAACAATACTTGGCACAAGAGAAGCATCAGAAATGGGCCGATGAGCTACTAGACGGATCTCTGAGGATCTTGGATGTTTGTAGCGCTGCCAAGGATGCAGTGTTGCAATCCAAGGAGTGCATACAAGACCTTCAATCAATCATCAGAAGAAGGCGTAAAGATGACTCTGGAGTGCTCACAAGTGAGGCAAACAGATCACCTTTCTCTTCACTCGACAACGACCAAGAGACTATCGCCATTGTTAGCAAGTTGAGAGATGTTGAAGCAGTCACCCTCACAGTGTTGGAATCAGTTTTGTCCTTCATCTCTGGGCCAAAGTCAAAGCCTTGCAGCTGGTCTTTGGTTTCTAAGATGGTGCAGTCTAAAAGAATAGCTTGCGAGGAAGAAATGGAAGTAAACGAATTTGCACAAGTGGATGCTGCATTGAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

195

Amino Acids

21.77

Weight (kDa)

6.16

Isoelectric Point (pI)

64.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 42 - 108 8.5e-26 Protein BPS1
BPS1 PF03087 111 - 193 8.6e-18 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 72
AclWI GGATC 2 cut(s) 214, 224
AcsI RAATTY 3 cut(s) 15, 76, 551
AfeI AGCGCT 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 72
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 7 cut(s) 14, 20, 110, 137, 284, 413, 577
AluBI AGCT 4 cut(s) 59, 196, 483, 524
AluI AGCT 4 cut(s) 59, 196, 483, 524
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 2 cut(s) 54, 371
AlwI GGATC 2 cut(s) 214, 224
Aor51HI AGCGCT 1 cut(s) 235
AoxI GGCC 2 cut(s) 186, 461
ApeKI GCWGC 3 cut(s) 236, 480, 569
ApoI RAATTY 3 cut(s) 15, 76, 551
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 186, 461
AsuHPI GGTGA 2 cut(s) 339, 412
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 3 cut(s) 223, 492, 556
BccI CCATC 1 cut(s) 496
BcoDI GTCTC 2 cut(s) 54, 371
BfaI CTAG 2 cut(s) 53, 200
BfoI RGCGCY 1 cut(s) 237
BisI GCNGC 3 cut(s) 237, 481, 570
BlsI GCNGC 3 cut(s) 238, 482, 571
BmgT120I GGNCC 2 cut(s) 186, 461
BmsI GCATC 3 cut(s) 184, 235, 556
BpmI CTGGAG 1 cut(s) 339
BsaJI CCNNGG 4 cut(s) 71, 81, 240, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 72
BseDI CCNNGG 4 cut(s) 71, 81, 240, 261
BseGI GGATG 3 cut(s) 229, 250, 571
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 203
BseXI GCAGC 3 cut(s) 223, 492, 556
BsgI GTGCAG 1 cut(s) 527
BshFI GGCC 2 cut(s) 188, 463
BsiHKAI GWGCWC 1 cut(s) 327
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 2 cut(s) 54, 371
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 188, 463
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 3 cut(s) 206, 216, 344
BspANI GGCC 2 cut(s) 188, 463
BspCNI CTCAG 1 cut(s) 204
BspPI GGATC 2 cut(s) 214, 224
BssECI CCNNGG 4 cut(s) 71, 81, 240, 261
BssMI GATC 3 cut(s) 206, 216, 344
BssT1I CCWWGG 4 cut(s) 71, 81, 240, 261
Bst4CI ACNGT 1 cut(s) 430
Bst6I CTCTTC 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 526
BstDEI CTNAG 2 cut(s) 212, 498
BstF5I GGATG 3 cut(s) 229, 250, 571
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 3 cut(s) 209, 219, 347
BstMAI GTCTC 2 cut(s) 54, 371
BstMBI GATC 3 cut(s) 206, 216, 344
BstMWI GCNNNNNNNGC 2 cut(s) 139, 245
BstV1I GCAGC 3 cut(s) 223, 492, 556
BstX2I RGATCY 2 cut(s) 206, 216
BstYI RGATCY 2 cut(s) 206, 216
BsuRI GGCC 2 cut(s) 188, 463
BtsCI GGATG 3 cut(s) 229, 250, 571
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 435
Cac8I GCNNGC 1 cut(s) 526
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 186, 461
CviAII CATG 1 cut(s) 27
CviJI RGCY 7 cut(s) 59, 188, 196, 463, 475, 483, 524
CviKI_1 RGCY 7 cut(s) 59, 188, 196, 463, 475, 483, 524
DdeI CTNAG 2 cut(s) 212, 498
DpnI GATC 3 cut(s) 208, 218, 346
DpnII GATC 3 cut(s) 206, 216, 344
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Eco130I CCWWGG 4 cut(s) 71, 81, 240, 261
Eco47III AGCGCT 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 76
EcoT14I CCWWGG 4 cut(s) 71, 81, 240, 261
ErhI CCWWGG 4 cut(s) 71, 81, 240, 261
FaeI CATG 1 cut(s) 30
FaiI YATR 4 cut(s) 28, 122, 272, 583
FalI AAGNNNNNCTT 2 cut(s) 508, 540
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 26
Fnu4HI GCNGC 3 cut(s) 237, 481, 570
FokI GGATG 3 cut(s) 236, 257, 578
Fsp4HI GCNGC 3 cut(s) 237, 481, 570
FspBI CTAG 2 cut(s) 53, 200
GlaI GCGC 1 cut(s) 235
GluI GCNGC 3 cut(s) 237, 481, 570
GsuI CTGGAG 1 cut(s) 339
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 2 cut(s) 188, 463
HhaI GCGC 1 cut(s) 236
Hin1II CATG 1 cut(s) 30
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 4 cut(s) 39, 95, 314, 437
HphI GGTGA 2 cut(s) 339, 412
Hpy166II GTNNAC 2 cut(s) 118, 547
Hpy188I TCNGA 3 cut(s) 180, 213, 296
Hpy188III TCNNGA 2 cut(s) 36, 318
Hpy8I GTNNAC 2 cut(s) 118, 547
HpyAV CCTTC 4 cut(s) 120, 290, 294, 460
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 7 cut(s) 248, 256, 270, 480, 508, 557, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 245
HpyF3I CTNAG 2 cut(s) 212, 498
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 1 cut(s) 30
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 206, 216, 344
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 3 cut(s) 303, 444, 469
Lsp1109I GCAGC 3 cut(s) 223, 492, 556
LweI GCATC 3 cut(s) 184, 235, 556
MaeI CTAG 2 cut(s) 53, 200
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 418
MalI GATC 3 cut(s) 208, 218, 346
MboI GATC 3 cut(s) 206, 216, 344
MboII GAAGA 3 cut(s) 309, 348, 545
MfeI CAATTG 2 cut(s) 44, 137
MflI RGATCY 2 cut(s) 206, 216
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 5 cut(s) 15, 44, 76, 137, 551
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 4 cut(s) 207, 328, 434, 523
MspA1I CMGCKG 1 cut(s) 483
MunI CAATTG 2 cut(s) 44, 137
MwoI GCNNNNNNNGC 2 cut(s) 139, 245
NdeII GATC 3 cut(s) 206, 216, 344
NlaIII CATG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 418
PfeI GAWTC 3 cut(s) 39, 95, 437
PflMI CCANNNNNTGG 1 cut(s) 72
PkrI GCNGC 3 cut(s) 238, 482, 571
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PspPI GGNCC 2 cut(s) 186, 461
PsuI RGATCY 2 cut(s) 206, 216
PvuII CAGCTG 1 cut(s) 483
SatI GCNGC 3 cut(s) 237, 481, 570
Sau3AI GATC 3 cut(s) 206, 216, 344
Sau96I GGNCC 2 cut(s) 186, 461
SchI GAGTC 1 cut(s) 308
SduI GDGCHC 1 cut(s) 327
SfaNI GCATC 3 cut(s) 184, 235, 556
Sse9I AATT 5 cut(s) 15, 44, 76, 137, 551
SspMI CTAG 2 cut(s) 53, 200
StyI CCWWGG 4 cut(s) 71, 81, 240, 261
TaaI ACNGT 1 cut(s) 430
TaiI ACGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 363
TasI AATT 5 cut(s) 15, 44, 76, 137, 551
TfiI GAWTC 3 cut(s) 39, 95, 437
TscAI CASTG 2 cut(s) 255, 435
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 3 cut(s) 236, 480, 569
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 442
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 2 cut(s) 255, 435
Van91I CCANNNNNTGG 1 cut(s) 72
XapI RAATTY 3 cut(s) 15, 76, 551
XspI CTAG 2 cut(s) 53, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.