Rh6CG245400

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000199
Physical Location & Seq
Forward (+)
41283110 .. 41284231
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG245400.1

Sequence Viewer

Length: 834 bp
ATGGCTTACCACACTCGCTCTAACAGCTTCCCATCAAGGCCACACCCCATCATTCAAGAAGTTGATGAACATTTGTGCAGATTGAGTTCATCCGAGTCCACATCCACATCTTCATCATCAATAAGCAACAAACTAAATGGCCTGCAAGACCTACTTTATTGTGTTGATAGGTTGCTTCAGTTGCAAGGCACCCAACAAGCATTAGCACAAGAGCAACAACAGAAATGGGCTAATGAGCTATTAGACAGCTGTCTCCGGCTCTTGGATATTTGTAGCACTGCAAAGGATGCCCTCTCGCAGACCAAGGAGTGCATACAAGACCTTCAATCAATCATTAGAAGAAAACGGGGAGGTGAAACTGGGCTCACTAATGAGGTCAGGAAATACTTGAGCTCTCGGAAGATGGTGAAGAAGTCAATTCACAAGGCTATGGGAAATCTGAAGGGAATGAAAAACAGATCCACGTTCTCATCCGCCAACAAGGACCAAGAAACTATCGCCATTGTTAGCAAGCTGAGAGATGTTGAAGCAGTCTCTCTCACTATCTTCGAATCAGTGCTGTCCTTCATCTCTGGACCAAAGTCAAAGCCTAGCAGCTGGTCTTTGGTTTCCAAGATGGTGCAGTCCAAAAGAATAGCTTGTGATGAGGAAGCAAAAGTGAATGAGTTTGCAGAGGTGGATGCTGCATTGAAGTCACTCAAGAGTGCAGACAATGCACAAAACCAGCTTAGCAATCTGGAGTCATGCATTCAAGACCAAGAAGAAGGACTTGAGAGCCTATTTAGGCAATTGATCAAAACAAGGGTCTCCCTTCTCAACATCCTAAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

277

Amino Acids

30.95

Weight (kDa)

8.77

Isoelectric Point (pI)

58.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 274 2e-85 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 1 cut(s) 474
AclWI GGATC 1 cut(s) 453
AcuI CTGAAG 2 cut(s) 161, 461
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 5 cut(s) 56, 326, 527, 691, 752
AluBI AGCT 8 cut(s) 27, 238, 249, 393, 514, 597, 638, 727
AluI AGCT 8 cut(s) 27, 238, 249, 393, 514, 597, 638, 727
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 3 cut(s) 257, 538, 811
AlwI GGATC 1 cut(s) 453
AoxI GGCC 2 cut(s) 38, 139
ApeKI GCWGC 2 cut(s) 594, 683
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
AspS9I GGNCC 2 cut(s) 484, 575
AsuHPI GGTGA 2 cut(s) 365, 418
AsuII TTCGAA 1 cut(s) 549
AvaII GGWCC 2 cut(s) 484, 575
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 2 cut(s) 366, 395
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 2 cut(s) 606, 670
BccI CCATC 4 cut(s) 40, 56, 397, 610
BclI TGATCA 1 cut(s) 792
BcoDI GTCTC 3 cut(s) 257, 538, 811
BfaI CTAG 2 cut(s) 591, 832
BisI GCNGC 2 cut(s) 595, 684
BlpI GCTNAGC 1 cut(s) 728
BlsI GCNGC 2 cut(s) 596, 685
Bme18I GGWCC 2 cut(s) 484, 575
BmgT120I GGNCC 2 cut(s) 484, 575
BmiI GGNNCC 1 cut(s) 190
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 2 cut(s) 277, 670
BmuI ACTGGG 1 cut(s) 369
BoxI GACNNNNGTC 2 cut(s) 249, 580
BpmI CTGGAG 1 cut(s) 758
Bpu1102I GCTNAGC 1 cut(s) 728
Bpu14I TTCGAA 1 cut(s) 549
BpuEI CTTGAG 3 cut(s) 409, 683, 791
BsaI GGTCTC 1 cut(s) 811
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 6 cut(s) 89, 101, 292, 470, 685, 819
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 364
BseXI GCAGC 2 cut(s) 606, 670
BsgI GTGCAG 3 cut(s) 97, 641, 726
BshFI GGCC 2 cut(s) 40, 141
BshNI GGYRCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 395
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 3 cut(s) 257, 538, 811
BsmI GAATGC 1 cut(s) 747
BsnI GGCC 2 cut(s) 40, 141
Bso31I GGTCTC 1 cut(s) 811
Bsp119I TTCGAA 1 cut(s) 549
Bsp1286I GDGCHC 2 cut(s) 366, 395
Bsp143I GATC 2 cut(s) 458, 792
Bsp1720I GCTNAGC 1 cut(s) 728
BspACI CCGC 1 cut(s) 474
BspANI GGCC 2 cut(s) 40, 141
BspCNI CTCAG 1 cut(s) 507
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 1 cut(s) 453
BspT104I TTCGAA 1 cut(s) 549
BspT107I GGYRCC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 811
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 2 cut(s) 458, 792
BssT1I CCWWGG 1 cut(s) 303
BstAPI GCANNNNNTGC 2 cut(s) 287, 713
BstBI TTCGAA 1 cut(s) 549
BstC8I GCNNGC 2 cut(s) 143, 512
BstDEI CTNAG 2 cut(s) 515, 728
BstF5I GGATG 6 cut(s) 89, 101, 292, 470, 685, 819
BstKTI GATC 2 cut(s) 461, 795
BstMAI GTCTC 3 cut(s) 257, 538, 811
BstMBI GATC 2 cut(s) 458, 792
BstMWI GCNNNNNNNGC 4 cut(s) 24, 181, 287, 713
BstPAI GACNNNNGTC 2 cut(s) 249, 580
BstV1I GCAGC 2 cut(s) 606, 670
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BsuRI GGCC 2 cut(s) 40, 141
BtsCI GGATG 6 cut(s) 89, 101, 292, 470, 685, 819
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 276, 561
Cac8I GCNNGC 2 cut(s) 143, 512
Cfr13I GGNCC 2 cut(s) 484, 575
CviAII CATG 1 cut(s) 744
DdeI CTNAG 2 cut(s) 515, 728
DpnI GATC 2 cut(s) 460, 794
DpnII GATC 2 cut(s) 458, 792
EciI GGCGGA 1 cut(s) 463
Ecl136II GAGCTC 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 2 cut(s) 366, 395
Eco31I GGTCTC 1 cut(s) 811
Eco47I GGWCC 2 cut(s) 484, 575
Eco53kI GAGCTC 1 cut(s) 393
Eco57I CTGAAG 2 cut(s) 161, 461
EcoICRI GAGCTC 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 749
EcoT38I GRGCYC 2 cut(s) 366, 395
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 1 cut(s) 747
FaiI YATR 3 cut(s) 314, 431, 745
FalI AAGNNNNNCTT 6 cut(s) 138, 170, 622, 654, 753, 785
FatI CATG 1 cut(s) 743
FbaI TGATCA 1 cut(s) 792
Fnu4HI GCNGC 2 cut(s) 595, 684
FokI GGATG 6 cut(s) 76, 88, 299, 457, 692, 806
FriOI GRGCYC 2 cut(s) 366, 395
Fsp4HI GCNGC 2 cut(s) 595, 684
FspBI CTAG 2 cut(s) 591, 832
GluI GCNGC 2 cut(s) 595, 684
GsuI CTGGAG 1 cut(s) 758
HaeIII GGCC 2 cut(s) 40, 141
HapII CCGG 1 cut(s) 256
Hin1II CATG 1 cut(s) 747
HinfI GANTC 3 cut(s) 95, 551, 740
HpaII CCGG 1 cut(s) 256
HphI GGTGA 2 cut(s) 365, 418
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 3 cut(s) 94, 399, 441
Hpy188III TCNNGA 6 cut(s) 56, 379, 573, 700, 737, 752
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 5 cut(s) 332, 436, 574, 758, 821
HpyCH4IV ACGT 1 cut(s) 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 181, 287, 713
HpyF3I CTNAG 2 cut(s) 515, 728
HpySE526I ACGT 1 cut(s) 464
Hsp92II CATG 1 cut(s) 747
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 2 cut(s) 458, 792
LpnPI CCDG 8 cut(s) 155, 269, 345, 364, 558, 583, 722, 737
Lsp1109I GCAGC 2 cut(s) 606, 670
LweI GCATC 2 cut(s) 277, 670
MaeI CTAG 2 cut(s) 591, 832
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 1 cut(s) 693
MalI GATC 2 cut(s) 460, 794
MboI GATC 2 cut(s) 458, 792
MboII GAAGA 6 cut(s) 102, 351, 412, 421, 538, 773
MfeI CAATTG 1 cut(s) 788
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 2 cut(s) 366, 395
MluCI AATT 2 cut(s) 417, 788
MlyI GAGTC 2 cut(s) 104, 749
MnlI CCTC 5 cut(s) 302, 344, 367, 640, 667
Mph1103I ATGCAT 1 cut(s) 749
MspA1I CMGCKG 2 cut(s) 249, 597
MspI CCGG 1 cut(s) 256
MunI CAATTG 1 cut(s) 788
Mva1269I GAATGC 1 cut(s) 747
MwoI GCNNNNNNNGC 4 cut(s) 24, 181, 287, 713
NdeII GATC 2 cut(s) 458, 792
NlaIII CATG 1 cut(s) 747
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 693
NsiI ATGCAT 1 cut(s) 749
NspV TTCGAA 1 cut(s) 549
PctI GAATGC 1 cut(s) 747
PfeI GAWTC 1 cut(s) 551
PkrI GCNGC 2 cut(s) 596, 685
PleI GAGTC 2 cut(s) 103, 748
PpsI GAGTC 2 cut(s) 103, 748
PshAI GACNNNNGTC 2 cut(s) 249, 580
Psp124BI GAGCTC 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 484, 575
PsuI RGATCY 1 cut(s) 458
PvuII CAGCTG 2 cut(s) 249, 597
SacI GAGCTC 1 cut(s) 395
SatI GCNGC 2 cut(s) 595, 684
Sau3AI GATC 2 cut(s) 458, 792
Sau96I GGNCC 2 cut(s) 484, 575
SchI GAGTC 2 cut(s) 104, 749
SduI GDGCHC 2 cut(s) 366, 395
SfaNI GCATC 2 cut(s) 277, 670
SfuI TTCGAA 1 cut(s) 549
SinI GGWCC 2 cut(s) 484, 575
SmlI CTYRAG 3 cut(s) 388, 698, 770
SmoI CTYRAG 3 cut(s) 388, 698, 770
Sse9I AATT 2 cut(s) 417, 788
SsiI CCGC 1 cut(s) 474
SspMI CTAG 2 cut(s) 591, 832
SstI GAGCTC 1 cut(s) 395
StyI CCWWGG 1 cut(s) 303
TaiI ACGT 1 cut(s) 467
TaqI TCGA 1 cut(s) 549
TasI AATT 2 cut(s) 417, 788
TfiI GAWTC 1 cut(s) 551
TscAI CASTG 2 cut(s) 283, 561
TseFI GTSAC 1 cut(s) 693
TseI GCWGC 2 cut(s) 594, 683
Tsp45I GTSAC 1 cut(s) 693
TspDTI ATGAA 5 cut(s) 78, 81, 102, 464, 556
TspRI CASTG 2 cut(s) 283, 561
VpaK11BI GGWCC 2 cut(s) 484, 575
XspI CTAG 2 cut(s) 591, 832
Zsp2I ATGCAT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.