Rroxscaffold_6G00396480

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000199
Physical Location & Seq
Forward (+)
18011599 .. 18013854
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396480.1

Sequence Viewer

Length: 207 bp
ATGCCGGTCAAGGCCACTAAGCCGAATTTCCTTAAGGCTTCAAAGCTGGTGCAGCCAGGAAAAGTAGCATGTGAAGGTGAAGAAGTCACAGAAACGAATGAGCTTGAGAAGGTGGATGTTGCATTACACTTCATGTGTCATAAGACAAAAACATCAGTAACACCTTCATTATTGAAGAACGACTTATATGCCGCTTTAGGCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

68

Amino Acids

7.37

Weight (kDa)

7.78

Isoelectric Point (pI)

28.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 25
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 42, 175
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 2 cut(s) 46, 103
AluI AGCT 2 cut(s) 46, 103
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 25
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 89
BbvI GCAGC 1 cut(s) 64
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 204
BfrI CTTAAG 1 cut(s) 32
BisI GCNGC 2 cut(s) 53, 192
BlsI GCNGC 2 cut(s) 54, 193
Bme1390I CCNGG 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 4
BseBI CCWGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 71
BshFI GGCC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 5
BsnI GGCC 1 cut(s) 14
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 14
BspTI CTTAAG 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 57
BstAFI CTTAAG 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstMWI GCNNNNNNNGC 2 cut(s) 52, 200
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 121
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 4
CviAII CATG 2 cut(s) 69, 133
CviJI RGCY 6 cut(s) 14, 22, 38, 46, 55, 103
CviKI_1 RGCY 6 cut(s) 14, 22, 38, 46, 55, 103
DdeI CTNAG 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 2 cut(s) 72, 136
FaiI YATR 5 cut(s) 70, 134, 141, 187, 189
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 2 cut(s) 68, 132
Fnu4HI GCNGC 2 cut(s) 53, 192
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 53, 192
GlaI GCGC 1 cut(s) 202
GluI GCNGC 2 cut(s) 53, 192
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 203
Hin1II CATG 2 cut(s) 72, 136
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 68, 103, 174
HpyCH4V TGCA 2 cut(s) 52, 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 200
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 2 cut(s) 72, 136
HspAI GCGC 1 cut(s) 201
LpnPI CCDG 4 cut(s) 18, 32, 42, 69
Lsp1109I GCAGC 1 cut(s) 64
MaeIII GTNAC 2 cut(s) 85, 157
MboII GAAGA 2 cut(s) 92, 187
MluCI AATT 1 cut(s) 25
MseI TTAA 2 cut(s) 33, 205
MspCI CTTAAG 1 cut(s) 32
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 52, 200
NlaIII CATG 2 cut(s) 72, 136
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 72
PkrI GCNGC 2 cut(s) 54, 193
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
SaqAI TTAA 2 cut(s) 33, 205
SatI GCNGC 2 cut(s) 53, 192
ScrFI CCNGG 1 cut(s) 57
SetI ASST 5 cut(s) 48, 79, 105, 114, 166
SgeI CNNG 8 cut(s) 17, 22, 59, 68, 69, 81, 116, 145
SmlI CTYRAG 2 cut(s) 32, 104
SmoI CTYRAG 2 cut(s) 32, 104
Sse9I AATT 1 cut(s) 25
SsiI CCGC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 55
TasI AATT 1 cut(s) 25
TauI GCSGC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 33, 205
Tru9I TTAA 2 cut(s) 33, 205
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 121, 156
Vha464I CTTAAG 1 cut(s) 32
XapI RAATTY 1 cut(s) 25
XceI RCATGY 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.