Rmu_sc0002340.1_g000003

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002340.1
OG0000199
Physical Location & Seq
Forward (+)
11297 .. 12130
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002340.1_g000003.1.cds

Sequence Viewer

Length: 834 bp
atggctttccacactcgctccaacagctttccctcaaggccacacccactgtttcaagaaattgatgagcatttgtacagattgaagtcttctgaggccacctccacatcttcatcatcaataagccacaaactaagcggtctccaagacttgcatgattgtgtcgataggttgcttcaattgcctctcacccaaaaggccttggcacaagagcagcatcagaaatgggctaatgagctattagatggatctctcaggatcttggatgtttgtagcacttccaaagatgccctgatgaaaaccaaggaaaacgtacaagatcttcaatcaatcattcgaagaaagcgtgcagatgaatctgcagtactcaagagtgaagcaaggaaatacttgatatccaggaagactgtgaaaaaggctctccacaaagctttggggaacatgaagggaatggcaaacagatcttcgtcttcctgcaacaaggatcaagagactataaccatcgtgagcaagctgagagatgtggaagcagtcactctcgccatgtttgaatcagttctatccttcatctcagggccaaagtcaaagccttacagctggtctttggtttccaagatgttgcagtcaaatagaatagcttgcgaggaagaaacaaaagtaaatgaatttacagaagtggatggtgcattgaagtcattcaagagtggtgacaacacgcacaaccagcttaacaatctggaatcatgcattcaaaaccaagaagaagcacttgattgtctatataggcaattgatcaaaacaagagtctcccttctcaacatcctcaaccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

277

Amino Acids

31.29

Weight (kDa)

8.94

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AclWI GGATC 3 cut(s) 256, 266, 492
AcsI RAATTY 1 cut(s) 665
AfaI GTAC 3 cut(s) 77, 315, 366
AgsI TTSAA 8 cut(s) 56, 85, 179, 326, 551, 691, 700, 752
AjnI CCWGG 1 cut(s) 398
AluBI AGCT 7 cut(s) 27, 238, 431, 514, 597, 638, 727
AluI AGCT 7 cut(s) 27, 238, 431, 514, 597, 638, 727
Alw26I GTCTC 3 cut(s) 146, 485, 811
AlwI GGATC 3 cut(s) 256, 266, 492
AoxI GGCC 4 cut(s) 38, 96, 198, 575
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 665
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
Asp700I GAANNNNTTC 2 cut(s) 555, 695
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 2 cut(s) 181, 719
AsuII TTCGAA 1 cut(s) 337
BarI GAAGNNNNNNTAC 2 cut(s) 306, 338
BbsI GAAGAC 3 cut(s) 81, 410, 462
BbvI GCAGC 1 cut(s) 226
BccI CCATC 3 cut(s) 239, 509, 674
BciT130I CCWGG 1 cut(s) 400
BclI TGATCA 1 cut(s) 792
BcoDI GTCTC 3 cut(s) 146, 485, 811
BfaI CTAG 1 cut(s) 832
BfmI CTRYAG 1 cut(s) 360
BglII AGATCT 2 cut(s) 319, 461
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
BmcAI AGTACT 1 cut(s) 366
Bme1390I CCNGG 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 575
BmrFI CCNGG 1 cut(s) 400
BmsI GCATC 2 cut(s) 226, 277
BpiI GAAGAC 3 cut(s) 81, 410, 462
BplI GAGNNNNNCTC 2 cut(s) 86, 118
Bpu14I TTCGAA 1 cut(s) 337
BpuEI CTTGAG 2 cut(s) 19, 353
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 201, 303
BsaXI ACNNNNNCTCC 1 cut(s) 32
BseBI CCWGG 1 cut(s) 400
BseDI CCNNGG 2 cut(s) 201, 303
BseGI GGATG 3 cut(s) 271, 685, 819
BseMII CTCAG 4 cut(s) 84, 268, 506, 585
BseXI GCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 4 cut(s) 40, 98, 200, 577
BsmAI GTCTC 3 cut(s) 146, 485, 811
BsmI GAATGC 1 cut(s) 747
BsnI GGCC 4 cut(s) 40, 98, 200, 577
Bso31I GGTCTC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 337
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 6 cut(s) 248, 258, 319, 461, 484, 792
BspACI CCGC 1 cut(s) 138
BspANI GGCC 4 cut(s) 40, 98, 200, 577
BspCNI CTCAG 4 cut(s) 85, 267, 507, 584
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 3 cut(s) 256, 266, 492
BspT104I TTCGAA 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 146
BsrGI TGTACA 1 cut(s) 75
BssECI CCNNGG 2 cut(s) 201, 303
BssMI GATC 6 cut(s) 248, 258, 319, 461, 484, 792
BssT1I CCWWGG 2 cut(s) 201, 303
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 2 cut(s) 51, 409
BstAUI TGTACA 1 cut(s) 75
BstBI TTCGAA 1 cut(s) 337
BstC8I GCNNGC 3 cut(s) 348, 512, 640
BstDEI CTNAG 5 cut(s) 93, 134, 254, 515, 571
BstF5I GGATG 3 cut(s) 271, 685, 819
BstKTI GATC 6 cut(s) 251, 261, 322, 464, 487, 795
BstMAI GTCTC 3 cut(s) 146, 485, 811
BstMBI GATC 6 cut(s) 248, 258, 319, 461, 484, 792
BstMWI GCNNNNNNNGC 3 cut(s) 24, 181, 724
BstNI CCWGG 1 cut(s) 400
BstSCI CCNGG 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 3 cut(s) 81, 410, 462
BstX2I RGATCY 4 cut(s) 248, 258, 319, 461
BstYI RGATCY 4 cut(s) 248, 258, 319, 461
BsuRI GGCC 4 cut(s) 40, 98, 200, 577
BtsCI GGATG 3 cut(s) 271, 685, 819
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 3 cut(s) 348, 512, 640
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 3 cut(s) 76, 314, 365
CviAII CATG 4 cut(s) 155, 442, 544, 744
CviQI GTAC 3 cut(s) 76, 314, 365
DdeI CTNAG 5 cut(s) 93, 134, 254, 515, 571
DpnI GATC 6 cut(s) 250, 260, 321, 463, 486, 794
DpnII GATC 6 cut(s) 248, 258, 319, 461, 484, 792
Eco130I CCWWGG 2 cut(s) 201, 303
Eco147I AGGCCT 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 398
EcoRV GATATC 1 cut(s) 396
EcoT14I CCWWGG 2 cut(s) 201, 303
EcoT22I ATGCAT 1 cut(s) 749
ErhI CCWWGG 2 cut(s) 201, 303
FaeI CATG 4 cut(s) 158, 445, 547, 747
FaiI YATR 7 cut(s) 156, 443, 497, 545, 745, 781, 783
FalI AAGNNNNNCTT 2 cut(s) 753, 785
FatI CATG 4 cut(s) 154, 441, 543, 743
FbaI TGATCA 1 cut(s) 792
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 3 cut(s) 278, 692, 806
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 1 cut(s) 832
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 4 cut(s) 40, 98, 200, 577
Hin1II CATG 4 cut(s) 158, 445, 547, 747
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 4 cut(s) 356, 551, 740, 804
HphI GGTGA 2 cut(s) 181, 719
Hpy188I TCNGA 2 cut(s) 94, 222
Hpy188III TCNNGA 7 cut(s) 56, 256, 370, 488, 505, 700, 737
HpyAV CCTTC 3 cut(s) 439, 574, 821
HpyCH4III ACNGT 2 cut(s) 51, 409
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 7 cut(s) 154, 350, 362, 477, 622, 686, 747
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 181, 724
HpyF3I CTNAG 5 cut(s) 93, 134, 254, 515, 571
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 4 cut(s) 158, 445, 547, 747
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 6 cut(s) 248, 258, 319, 461, 484, 792
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 9 cut(s) 241, 305, 385, 412, 487, 558, 583, 722, 737
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 2 cut(s) 226, 277
MaeI CTAG 1 cut(s) 832
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 2 cut(s) 532, 707
MalI GATC 6 cut(s) 250, 260, 321, 463, 486, 794
MboI GATC 6 cut(s) 248, 258, 319, 461, 484, 792
MboII GAAGA 9 cut(s) 81, 102, 314, 351, 415, 456, 462, 659, 773
MfeI CAATTG 2 cut(s) 179, 788
MflI RGATCY 4 cut(s) 248, 258, 319, 461
MluCI AATT 4 cut(s) 60, 179, 665, 788
MlyI GAGTC 1 cut(s) 813
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 6 cut(s) 43, 88, 112, 195, 637, 833
Mph1103I ATGCAT 1 cut(s) 749
MroXI GAANNNNTTC 2 cut(s) 555, 695
MseI TTAA 1 cut(s) 729
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 597
MspR9I CCNGG 1 cut(s) 400
MunI CAATTG 2 cut(s) 179, 788
Mva1269I GAATGC 1 cut(s) 747
MvaI CCWGG 1 cut(s) 400
MwoI GCNNNNNNNGC 3 cut(s) 24, 181, 724
NdeII GATC 6 cut(s) 248, 258, 319, 461, 484, 792
NlaIII CATG 4 cut(s) 158, 445, 547, 747
NmuCI GTSAC 2 cut(s) 532, 707
NsiI ATGCAT 1 cut(s) 749
NspV TTCGAA 1 cut(s) 337
PceI AGGCCT 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PctI GAATGC 1 cut(s) 747
PdmI GAANNNNTTC 2 cut(s) 555, 695
PfeI GAWTC 3 cut(s) 356, 551, 740
PfoI TCCNGGA 1 cut(s) 398
PkrI GCNGC 1 cut(s) 216
PleI GAGTC 1 cut(s) 812
PpsI GAGTC 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 398
PspGI CCWGG 1 cut(s) 398
PspPI GGNCC 1 cut(s) 575
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 4 cut(s) 248, 258, 319, 461
PvuII CAGCTG 1 cut(s) 597
RsaI GTAC 3 cut(s) 77, 315, 366
RsaNI GTAC 3 cut(s) 76, 314, 365
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 6 cut(s) 248, 258, 319, 461, 484, 792
Sau96I GGNCC 1 cut(s) 575
ScaI AGTACT 1 cut(s) 366
SchI GAGTC 1 cut(s) 813
ScrFI CCNGG 1 cut(s) 400
SfaNI GCATC 2 cut(s) 226, 277
SfcI CTRYAG 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 34, 368
SmoI CTYRAG 2 cut(s) 34, 368
Sse9I AATT 4 cut(s) 60, 179, 665, 788
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 1 cut(s) 138
SspMI CTAG 1 cut(s) 832
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 398
StyI CCWWGG 2 cut(s) 201, 303
TaaI ACNGT 2 cut(s) 51, 409
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 165, 337
TasI AATT 4 cut(s) 60, 179, 665, 788
TatI WGTACW 2 cut(s) 75, 364
TfiI GAWTC 3 cut(s) 356, 551, 740
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 2 cut(s) 532, 707
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 2 cut(s) 532, 707
TspDTI ATGAA 6 cut(s) 102, 311, 369, 458, 556, 678
TspRI CASTG 1 cut(s) 54
XapI RAATTY 1 cut(s) 665
XmnI GAANNNNTTC 2 cut(s) 555, 695
XspI CTAG 1 cut(s) 832
ZrmI AGTACT 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.