Rroxscaffold_7G00188480

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000199
Physical Location & Seq
Reverse (-)
28045423 .. 28048678
3256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188480.1

Sequence Viewer

Length: 312 bp
ATGGTGAAGAAGTCAATCCACAAGGCTATGGGAAAGTCGAAGGGAATGGAAAACAGATCTACTTTCTCATCCGGCAATAAGGATCAAGAGACTATTGCCATTGTTAGCAAGCTAAGAGATTCAAAGAGGATAGCTTGTGATGAAGAAGCCAATGTAAATGAATTTGCAGAGGTTGATGCTGCATTGAAGTCACTCAACAATGCTGACAATGCACAAAACCAGATTACCAATCTGGAGTCATGCATTCAAGACCAAGAAGGACTTGAGCGCCTATTTAGGCAGTTGATCAAAACTACCTTCTCAACATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

103

Amino Acids

11.47

Weight (kDa)

6.58

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 33 - 98 6.5e-12 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 90
AcsI RAATTY 1 cut(s) 161
AgsI TTSAA 3 cut(s) 123, 187, 248
AluBI AGCT 2 cut(s) 112, 134
AluI AGCT 2 cut(s) 112, 134
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 161
AspLEI GCGC 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 16
BbvI GCAGC 1 cut(s) 166
BclI TGATCA 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 83
BfoI RGCGCY 1 cut(s) 271
BglII AGATCT 1 cut(s) 56
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmsI GCATC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 284
BseGI GGATG 2 cut(s) 68, 305
BseXI GCAGC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 243
Bsp143I GATC 3 cut(s) 56, 82, 285
BspPI GGATC 1 cut(s) 90
BssMI GATC 3 cut(s) 56, 82, 285
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 2 cut(s) 68, 305
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 3 cut(s) 59, 85, 288
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 3 cut(s) 56, 82, 285
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BtsCI GGATG 2 cut(s) 68, 305
Cac8I GCNNGC 1 cut(s) 110
CfoI GCGC 1 cut(s) 270
CviAII CATG 1 cut(s) 240
CviJI RGCY 4 cut(s) 26, 112, 134, 149
CviKI_1 RGCY 4 cut(s) 26, 112, 134, 149
DdeI CTNAG 1 cut(s) 113
DpnI GATC 3 cut(s) 58, 84, 287
DpnII GATC 3 cut(s) 56, 82, 285
EcoT22I ATGCAT 1 cut(s) 245
FaeI CATG 1 cut(s) 243
FaiI YATR 2 cut(s) 29, 241
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FatI CATG 1 cut(s) 239
FbaI TGATCA 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 55, 292
Fsp4HI GCNGC 1 cut(s) 180
GlaI GCGC 1 cut(s) 269
GluI GCNGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 271
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 270
Hin1II CATG 1 cut(s) 243
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 2 cut(s) 119, 236
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 4 cut(s) 86, 233, 248, 309
HpyAV CCTTC 3 cut(s) 34, 251, 307
HpyCH4V TGCA 4 cut(s) 167, 182, 212, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 1 cut(s) 243
HspAI GCGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 3 cut(s) 56, 82, 285
LpnPI CCDG 3 cut(s) 85, 218, 233
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 189
MalI GATC 3 cut(s) 58, 84, 287
MboI GATC 3 cut(s) 56, 82, 285
MboII GAAGA 2 cut(s) 19, 155
MflI RGATCY 1 cut(s) 56
MluCI AATT 1 cut(s) 161
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 2 cut(s) 120, 163
Mph1103I ATGCAT 1 cut(s) 245
MspI CCGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 3 cut(s) 56, 82, 285
NlaIII CATG 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 245
PctI GAATGC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PsuI RGATCY 1 cut(s) 56
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 3 cut(s) 56, 82, 285
SchI GAGTC 1 cut(s) 245
SetI ASST 4 cut(s) 114, 136, 174, 299
SfaNI GCATC 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 161
TaqI TCGA 1 cut(s) 38
TasI AATT 1 cut(s) 161
TfiI GAWTC 1 cut(s) 119
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 2 cut(s) 156, 174
XapI RAATTY 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.