FvH4_2g16240

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000199
Physical Location & Seq
Reverse (-)
14193209 .. 14194348
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16240.t1

Sequence Viewer

Length: 915 bp
ATGGCTGCAGCTTCTCCTTCAAACCCTAAAGCCAACTACCATATTCGATCTATCAGCTTGCCTTCGAAACCACACCCGCTATTTCAACAATGTGAAGATCATTTGTTGAGAATCATAGCATCTTCTGATGCCACCTCCTCCTCCTCATCAGCCATAAGCCACAAGTTGAGTGGCCTTCTCGATTTGCACAACTGCATGAATGACTTGTTTCAGTTGCCTCTAACCCAAGAAGCCTTTGTTCGGGAGAGAAATGAAAAATGGGTTGATGAGCTTTTGGACAGTTCTCTCAGGCTCTTGGATGTGTGCACAGCAGCCAAGGATGCCTTAATACACACCAAAGAGTGCGCGAGAGAAATCCAATCCACCATGCGCAGAAGAAGGGGAGGCCAAACCGGGTTCACAAACGAGGTCAAGAAGTATTTTGCCTCAAGGAAAGTGGTAAAGAAAGCAATCTGCAAAGCCCTTGTGACTTTGAAGAGTTGCGAGAAAAAGTCCATGCCCAGCTTCTCTTCCACCAACAAAGACAATGTGGCTGTGGCTCTGGTTAGCGTATTGAGGGAGGTTGAAGCAGTGTCTCTGACTGTGTTCGAGTCCCTATTGTCATTCATCTCCGGATCAAAGGGACAATCGAAGATGAGGGGCTGGTCTTTCGTTTCCAAGCTAATGCTCAACAAGAAAGTTGCTTGTGATGAAGAGAAATCAGAAGTAAACGAATTCGCTGATGTGGATACTGCACTAAGCTGCCTTGTTGGCCAAGAAACAAGCAAATCAGACAACATCTCCTGCAGCGAGAATGTCCAAAGCGATCTGCAACAATTGGAATCATGCAGTCAAGATCTAGAAGAAGGACTCGAGTGTCTGTTCCGGCGATTAATTAAGAATAGAGTTTCCCTTCTCAACACCCTTAGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

305

Amino Acids

33.73

Weight (kDa)

8.24

Isoelectric Point (pI)

61.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 55 - 300 1.2e-85 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 855
Acc16I TGCGCA 1 cut(s) 371
AccII CGCG 1 cut(s) 347
AccIII TCCGGA 1 cut(s) 611
AciI CCGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 622
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 1 cut(s) 713
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 4 cut(s) 21, 86, 475, 566
AluBI AGCT 6 cut(s) 11, 57, 271, 504, 661, 741
AluI AGCT 6 cut(s) 11, 57, 271, 504, 661, 741
Alw21I GWGCWC 1 cut(s) 308
Alw26I GTCTC 1 cut(s) 579
Alw44I GTGCAC 1 cut(s) 304
AlwI GGATC 1 cut(s) 622
Ama87I CYCGRG 1 cut(s) 851
Aor13HI TCCGGA 1 cut(s) 611
AoxI GGCC 3 cut(s) 172, 385, 751
ApaLI GTGCAC 1 cut(s) 304
ApeKI GCWGC 5 cut(s) 5, 8, 311, 741, 786
ApoI RAATTY 1 cut(s) 713
AseI ATTAAT 1 cut(s) 872
AspLEI GCGC 2 cut(s) 347, 372
AsuC2I CCSGG 1 cut(s) 394
AsuII TTCGAA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 851
BaeGI GKGCMC 1 cut(s) 308
BalI TGGCCA 1 cut(s) 753
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 4 cut(s) 20, 323, 728, 798
BciVI GTATCC 1 cut(s) 721
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 579
BfaI CTAG 1 cut(s) 839
BfmI CTRYAG 2 cut(s) 6, 784
BfuI GTATCC 1 cut(s) 721
BglI GCCNNNNNGGC 1 cut(s) 750
BglII AGATCT 1 cut(s) 835
BisI GCNGC 5 cut(s) 6, 9, 312, 742, 787
BlsI GCNGC 5 cut(s) 7, 10, 313, 743, 788
Bme1390I CCNGG 1 cut(s) 394
BmeT110I CYCGRG 1 cut(s) 851
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 3 cut(s) 118, 128, 310
Bpu10I CCTNAGC 1 cut(s) 905
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 412
BpuMI CCSGG 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 611
BsaXI ACNNNNNCTCC 2 cut(s) 764, 794
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 611
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 2 cut(s) 304, 325
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 301
BseRI GAGGAG 3 cut(s) 127, 130, 133
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 4 cut(s) 20, 323, 728, 798
BseYI CCCAGC 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 717
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 3 cut(s) 174, 387, 753
BsiHKAI GWGCWC 1 cut(s) 308
BsiHKCI CYCGRG 1 cut(s) 851
BsiSI CCGG 3 cut(s) 393, 612, 865
BslFI GGGAC 2 cut(s) 577, 636
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 579
BsmFI GGGAC 2 cut(s) 577, 636
BsnI GGCC 3 cut(s) 174, 387, 753
BsoBI CYCGRG 1 cut(s) 851
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 308
Bsp13I TCCGGA 1 cut(s) 611
Bsp143I GATC 5 cut(s) 47, 97, 614, 805, 835
BspACI CCGC 1 cut(s) 77
BspANI GGCC 3 cut(s) 174, 387, 753
BspCNI CTCAG 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 611
BspFNI CGCG 1 cut(s) 347
BspMAI CTGCAG 2 cut(s) 10, 788
BspPI GGATC 1 cut(s) 622
BspT104I TTCGAA 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 5 cut(s) 47, 97, 614, 805, 835
BssT1I CCWWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 281, 583
Bst6I CTCTTC 3 cut(s) 470, 514, 687
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 3 cut(s) 287, 737, 905
BstF5I GGATG 2 cut(s) 304, 325
BstFNI CGCG 1 cut(s) 347
BstHHI GCGC 2 cut(s) 347, 372
BstKTI GATC 5 cut(s) 50, 100, 617, 808, 838
BstMAI GTCTC 1 cut(s) 579
BstMBI GATC 5 cut(s) 47, 97, 614, 805, 835
BstMWI GCNNNNNNNGC 2 cut(s) 320, 750
BstSCI CCNGG 1 cut(s) 392
BstSFI CTRYAG 2 cut(s) 6, 784
BstSLI GKGCMC 1 cut(s) 308
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 4 cut(s) 20, 323, 728, 798
BstX2I RGATCY 1 cut(s) 835
BstYI RGATCY 1 cut(s) 835
BsuI GTATCC 1 cut(s) 721
BsuRI GGCC 3 cut(s) 174, 387, 753
BtsCI GGATG 2 cut(s) 304, 325
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 1 cut(s) 576
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 2 cut(s) 347, 372
CspCI CAANNNNNGTGG 4 cut(s) 151, 186, 417, 452
CviAII CATG 4 cut(s) 196, 367, 496, 825
DdeI CTNAG 3 cut(s) 287, 737, 905
DpnI GATC 5 cut(s) 49, 99, 616, 807, 837
DpnII GATC 5 cut(s) 47, 97, 614, 805, 835
DrdI GACNNNNNNGTC 1 cut(s) 855
DseDI GACNNNNNNGTC 1 cut(s) 855
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 3 cut(s) 470, 514, 687
EarI CTCTTC 3 cut(s) 470, 514, 687
Eco130I CCWWGG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 851
EcoRI GAATTC 1 cut(s) 713
EcoT14I CCWWGG 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 4 cut(s) 199, 370, 499, 828
FaiI YATR 7 cut(s) 42, 116, 155, 197, 368, 497, 826
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FaqI GGGAC 2 cut(s) 577, 636
FatI CATG 4 cut(s) 195, 366, 495, 824
FauI CCCGC 1 cut(s) 84
Fnu4HI GCNGC 5 cut(s) 6, 9, 312, 742, 787
FokI GGATG 2 cut(s) 311, 332
Fsp4HI GCNGC 5 cut(s) 6, 9, 312, 742, 787
FspBI CTAG 1 cut(s) 839
FspI TGCGCA 1 cut(s) 371
GlaI GCGC 2 cut(s) 346, 371
GluI GCNGC 5 cut(s) 6, 9, 312, 742, 787
GsaI CCCAGC 1 cut(s) 504
HaeIII GGCC 3 cut(s) 174, 387, 753
HapII CCGG 3 cut(s) 393, 612, 865
HhaI GCGC 2 cut(s) 347, 372
Hin1II CATG 4 cut(s) 199, 370, 499, 828
Hin6I GCGC 2 cut(s) 345, 370
HinP1I GCGC 2 cut(s) 345, 370
HinfI GANTC 4 cut(s) 111, 590, 821, 849
HpaII CCGG 3 cut(s) 393, 612, 865
Hpy166II GTNNAC 3 cut(s) 306, 399, 709
Hpy188I TCNGA 4 cut(s) 127, 579, 703, 772
Hpy188III TCNNGA 6 cut(s) 179, 242, 412, 612, 833, 839
Hpy8I GTNNAC 3 cut(s) 306, 399, 709
HpyAV CCTTC 6 cut(s) 27, 72, 185, 372, 839, 902
HpyCH4III ACNGT 2 cut(s) 281, 583
HpyCH4V TGCA 9 cut(s) 8, 187, 195, 306, 456, 734, 786, 811, 828
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 750
HpyF3I CTNAG 3 cut(s) 287, 737, 905
Hsp92II CATG 4 cut(s) 199, 370, 499, 828
HspAI GCGC 2 cut(s) 345, 370
Kpn2I TCCGGA 1 cut(s) 611
Kzo9I GATC 5 cut(s) 47, 97, 614, 805, 835
LpnPI CCDG 8 cut(s) 274, 406, 514, 527, 625, 628, 796, 878
Lsp1109I GCAGC 4 cut(s) 20, 323, 728, 798
LweI GCATC 3 cut(s) 118, 128, 310
MaeI CTAG 1 cut(s) 839
MaeIII GTNAC 1 cut(s) 466
MalI GATC 5 cut(s) 49, 99, 616, 807, 837
MboI GATC 5 cut(s) 47, 97, 614, 805, 835
MboII GAAGA 8 cut(s) 107, 114, 387, 487, 501, 643, 704, 854
MfeI CAATTG 1 cut(s) 815
MflI RGATCY 1 cut(s) 835
MhlI GDGCHC 1 cut(s) 308
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 4 cut(s) 713, 815, 873, 910
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 2 cut(s) 599, 843
Mox20I TGGCCA 1 cut(s) 753
MroI TCCGGA 1 cut(s) 611
MscI TGGCCA 1 cut(s) 753
MseI TTAA 4 cut(s) 326, 872, 876, 913
Msp20I TGGCCA 1 cut(s) 753
MspI CCGG 3 cut(s) 393, 612, 865
MspR9I CCNGG 1 cut(s) 394
MunI CAATTG 1 cut(s) 815
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 2 cut(s) 320, 750
NciI CCSGG 1 cut(s) 394
NdeII GATC 5 cut(s) 47, 97, 614, 805, 835
NlaIII CATG 4 cut(s) 199, 370, 499, 828
NmuCI GTSAC 1 cut(s) 466
NsbI TGCGCA 1 cut(s) 371
NspV TTCGAA 1 cut(s) 65
PacI TTAATTAA 1 cut(s) 876
PaeR7I CTCGAG 1 cut(s) 851
PfeI GAWTC 2 cut(s) 111, 821
PkrI GCNGC 5 cut(s) 7, 10, 313, 743, 788
PleI GAGTC 2 cut(s) 598, 843
PpsI GAGTC 2 cut(s) 598, 843
PshBI ATTAAT 1 cut(s) 872
PspFI CCCAGC 1 cut(s) 500
PspXI VCTCGAGB 1 cut(s) 851
PstI CTGCAG 2 cut(s) 10, 788
PsuI RGATCY 1 cut(s) 835
SaqAI TTAA 4 cut(s) 326, 872, 876, 913
SatI GCNGC 5 cut(s) 6, 9, 312, 742, 787
Sau3AI GATC 5 cut(s) 47, 97, 614, 805, 835
SchI GAGTC 2 cut(s) 599, 843
ScrFI CCNGG 1 cut(s) 394
SduI GDGCHC 1 cut(s) 308
SetI ASST 9 cut(s) 13, 59, 137, 273, 411, 506, 564, 663, 743
SfaNI GCATC 3 cut(s) 118, 128, 310
SfcI CTRYAG 2 cut(s) 6, 784
Sfr274I CTCGAG 1 cut(s) 851
SfuI TTCGAA 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 851
SmlI CTYRAG 2 cut(s) 427, 851
SmoI CTYRAG 2 cut(s) 427, 851
Sse9I AATT 4 cut(s) 713, 815, 873, 910
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 839
StyD4I CCNGG 1 cut(s) 392
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 2 cut(s) 281, 583
TaqI TCGA 6 cut(s) 46, 65, 180, 588, 629, 852
TasI AATT 4 cut(s) 713, 815, 873, 910
TfiI GAWTC 2 cut(s) 111, 821
Tru1I TTAA 4 cut(s) 326, 872, 876, 913
Tru9I TTAA 4 cut(s) 326, 872, 876, 913
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 5 cut(s) 5, 8, 311, 741, 786
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 4 cut(s) 212, 267, 595, 705
TspRI CASTG 1 cut(s) 576
VneI GTGCAC 1 cut(s) 304
VspI ATTAAT 1 cut(s) 872
XapI RAATTY 1 cut(s) 713
XbaI TCTAGA 1 cut(s) 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XhoI CTCGAG 1 cut(s) 851
XspI CTAG 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.