RLG00000013094

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000199
Physical Location & Seq
Reverse (-)
26154330 .. 26155157
828 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013094

Sequence Viewer

Length: 828 bp
ATGGCTTACCACACTCGCTCTAACAGCTTTCCATCAAGGCCACACCCCATCATTCAAGAAGTTGATGAACATTTGTGCAGATTGAGTTCATCCGAGTCCACATCCACATCTTCATCATCAATAAGCAACAAACTAAATGGCCTGCAAGGCTTACTTTATTGTGTTGATAGGTTGCTTCAATTGCAAGGCACCCAACAAGCATTAGCGCAACAACAGAAATGGGCTAGTGAGCTATTAGACGGCTCTCTCCGGCTCTTGGATATTTGTAGCACTGCAAAGGATGCCCTCTCGCAAACCAAGGAGTGCATACAGGACCTTCAATCCATCTTTAGAAGGAAACGGGGAGGTGAAACTGGACTCACTAATGAGGTCAGGAAATACTTGAGCTCTCGGAAGATGGTGAAGAAGTCAAGTCACAAGGCTATGGGAAATCTGAAGGGAATGAAAAACAGATCGACTTTCTCATCCACCAACAAGGACCAAGAAACTATCGCCATTTTCAGCAAGCTGAGAGATGTTGAAGCAATCACTCTCACAGTCTTTGAATCAGTGCTGTCCTTCATCTCTGGGCCGAAGTCTAAGCCTAGCGGCTGGTCTTTCGTTTCCAACATTGTGCAGTCTAAAAGAATAGCTTGTGATGAAGAAGCGTATGTAAATGAATTTGCAGAGGTTGATGCTGCATTGAAGTCATTAAAGACTGCAGAAAATGCACAGAACCAGCTTAACGATCTGGAATCATGCATTCAAGACCAAGAAGAAGGACTTGAGTGCCTATTTAGGCAATTGATCAAAACTAGAGTCTCCCTTCTCAACATCCTGAGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

276

Amino Acids

30.71

Weight (kDa)

8.62

Isoelectric Point (pI)

56.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 272 1.2e-84 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 1 cut(s) 588
AcsI RAATTY 1 cut(s) 659
AcuI CTGAAG 1 cut(s) 455
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 7 cut(s) 56, 179, 320, 521, 545, 685, 746
AluBI AGCT 6 cut(s) 27, 232, 387, 508, 632, 721
AluI AGCT 6 cut(s) 27, 232, 387, 508, 632, 721
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 805
AoxI GGCC 3 cut(s) 38, 139, 569
ApeKI GCWGC 1 cut(s) 677
ApoI RAATTY 1 cut(s) 659
ArsI GACNNNNNNTTYG 2 cut(s) 783, 815
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 3 cut(s) 313, 478, 569
AsuHPI GGTGA 2 cut(s) 359, 412
AvaII GGWCC 2 cut(s) 313, 478
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 664
BccI CCATC 4 cut(s) 40, 56, 332, 391
BceAI ACGGC 1 cut(s) 256
BclI TGATCA 1 cut(s) 786
BcoDI GTCTC 1 cut(s) 805
BfaI CTAG 4 cut(s) 225, 585, 795, 826
BfmI CTRYAG 1 cut(s) 699
BglI GCCNNNNNGGC 1 cut(s) 147
BisI GCNGC 2 cut(s) 589, 678
BlsI GCNGC 2 cut(s) 590, 679
Bme18I GGWCC 2 cut(s) 313, 478
BmgT120I GGNCC 3 cut(s) 313, 478, 569
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 2 cut(s) 271, 664
Bpu10I CCTNAGC 1 cut(s) 818
BpuEI CTTGAG 2 cut(s) 403, 785
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 358
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 5 cut(s) 89, 101, 286, 464, 813
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMII CTCAG 2 cut(s) 500, 809
BseNI ACTGG 1 cut(s) 358
BseXI GCAGC 1 cut(s) 664
BsgI GTGCAG 2 cut(s) 97, 635
BshFI GGCC 3 cut(s) 40, 141, 571
BshNI GGYRCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 389
BsiSI CCGG 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 805
BsmI GAATGC 1 cut(s) 741
BsnI GGCC 3 cut(s) 40, 141, 571
Bsp1286I GDGCHC 1 cut(s) 389
Bsp143I GATC 3 cut(s) 452, 727, 786
BspACI CCGC 1 cut(s) 588
BspANI GGCC 3 cut(s) 40, 141, 571
BspCNI CTCAG 2 cut(s) 501, 810
BspLI GGNNCC 1 cut(s) 190
BspMAI CTGCAG 1 cut(s) 703
BspT107I GGYRCC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 452, 727, 786
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 538
BstAPI GCANNNNNTGC 2 cut(s) 281, 707
BstC8I GCNNGC 2 cut(s) 143, 506
BstDEI CTNAG 3 cut(s) 509, 579, 818
BstF5I GGATG 5 cut(s) 89, 101, 286, 464, 813
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 455, 730, 789
BstMAI GTCTC 1 cut(s) 805
BstMBI GATC 3 cut(s) 452, 727, 786
BstMWI GCNNNNNNNGC 5 cut(s) 24, 147, 181, 281, 707
BstSFI CTRYAG 1 cut(s) 699
BstV1I GCAGC 1 cut(s) 664
BsuRI GGCC 3 cut(s) 40, 141, 571
BtsCI GGATG 5 cut(s) 89, 101, 286, 464, 813
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 270, 555
Cac8I GCNNGC 2 cut(s) 143, 506
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 3 cut(s) 313, 478, 569
CviAII CATG 1 cut(s) 738
DdeI CTNAG 3 cut(s) 509, 579, 818
DpnI GATC 3 cut(s) 454, 729, 788
DpnII GATC 3 cut(s) 452, 727, 786
Ecl136II GAGCTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 389
Eco47I GGWCC 2 cut(s) 313, 478
Eco53kI GAGCTC 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 387
EcoO109I RGGNCCY 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 743
EcoT38I GRGCYC 1 cut(s) 389
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 741
FaiI YATR 4 cut(s) 308, 425, 651, 739
FalI AAGNNNNNCTT 6 cut(s) 138, 170, 616, 648, 747, 779
FatI CATG 1 cut(s) 737
FbaI TGATCA 1 cut(s) 786
Fnu4HI GCNGC 2 cut(s) 589, 678
FokI GGATG 5 cut(s) 76, 88, 293, 451, 800
FriOI GRGCYC 1 cut(s) 389
Fsp4HI GCNGC 2 cut(s) 589, 678
FspBI CTAG 4 cut(s) 225, 585, 795, 826
GlaI GCGC 1 cut(s) 207
GluI GCNGC 2 cut(s) 589, 678
HaeIII GGCC 3 cut(s) 40, 141, 571
HapII CCGG 1 cut(s) 250
HhaI GCGC 1 cut(s) 208
Hin1II CATG 1 cut(s) 741
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 5 cut(s) 95, 357, 545, 734, 798
HpaII CCGG 1 cut(s) 250
HphI GGTGA 2 cut(s) 359, 412
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 3 cut(s) 94, 393, 435
Hpy188III TCNNGA 5 cut(s) 56, 373, 731, 746, 817
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 6 cut(s) 326, 327, 430, 568, 752, 815
HpyCH4III ACNGT 1 cut(s) 538
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 147, 181, 281, 707
HpyF3I CTNAG 3 cut(s) 509, 579, 818
Hsp92II CATG 1 cut(s) 741
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 786
Kzo9I GATC 3 cut(s) 452, 727, 786
LpnPI CCDG 9 cut(s) 155, 263, 296, 339, 358, 552, 577, 716, 731
Lsp1109I GCAGC 1 cut(s) 664
LweI GCATC 2 cut(s) 271, 664
MaeI CTAG 4 cut(s) 225, 585, 795, 826
MaeIII GTNAC 1 cut(s) 413
MalI GATC 3 cut(s) 454, 729, 788
MboI GATC 3 cut(s) 452, 727, 786
MboII GAAGA 5 cut(s) 102, 406, 415, 653, 767
MfeI CAATTG 2 cut(s) 179, 782
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 3 cut(s) 179, 659, 782
MlyI GAGTC 3 cut(s) 104, 351, 807
MmeI TCCRAC 1 cut(s) 630
MnlI CCTC 4 cut(s) 296, 338, 361, 661
Mph1103I ATGCAT 1 cut(s) 743
MseI TTAA 2 cut(s) 692, 723
MspI CCGG 1 cut(s) 250
MunI CAATTG 2 cut(s) 179, 782
Mva1269I GAATGC 1 cut(s) 741
MwoI GCNNNNNNNGC 5 cut(s) 24, 147, 181, 281, 707
NdeII GATC 3 cut(s) 452, 727, 786
NlaIII CATG 1 cut(s) 741
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 413
NsiI ATGCAT 1 cut(s) 743
PctI GAATGC 1 cut(s) 741
PfeI GAWTC 2 cut(s) 545, 734
PkrI GCNGC 2 cut(s) 590, 679
PleI GAGTC 3 cut(s) 103, 351, 806
PpsI GAGTC 3 cut(s) 103, 351, 806
PpuMI RGGWCCY 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 389
Psp5II RGGWCCY 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 3 cut(s) 313, 478, 569
PspPPI RGGWCCY 1 cut(s) 313
PstI CTGCAG 1 cut(s) 703
SacI GAGCTC 1 cut(s) 389
SaqAI TTAA 2 cut(s) 692, 723
SatI GCNGC 2 cut(s) 589, 678
Sau3AI GATC 3 cut(s) 452, 727, 786
Sau96I GGNCC 3 cut(s) 313, 478, 569
SchI GAGTC 3 cut(s) 104, 351, 807
SduI GDGCHC 1 cut(s) 389
SfaNI GCATC 2 cut(s) 271, 664
SfcI CTRYAG 1 cut(s) 699
SinI GGWCC 2 cut(s) 313, 478
SmlI CTYRAG 2 cut(s) 382, 764
SmoI CTYRAG 2 cut(s) 382, 764
Sse9I AATT 3 cut(s) 179, 659, 782
SsiI CCGC 1 cut(s) 588
SspMI CTAG 4 cut(s) 225, 585, 795, 826
SstI GAGCTC 1 cut(s) 389
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 538
TaqI TCGA 1 cut(s) 455
TasI AATT 3 cut(s) 179, 659, 782
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 2 cut(s) 545, 734
Tru1I TTAA 2 cut(s) 692, 723
Tru9I TTAA 2 cut(s) 692, 723
TscAI CASTG 2 cut(s) 277, 555
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 1 cut(s) 677
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 7 cut(s) 78, 81, 102, 458, 550, 654, 672
TspRI CASTG 2 cut(s) 277, 555
VpaK11BI GGWCC 2 cut(s) 313, 478
XapI RAATTY 1 cut(s) 659
XspI CTAG 4 cut(s) 225, 585, 795, 826
Zsp2I ATGCAT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.