Rh6DG236000

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000199
Physical Location & Seq
Forward (+)
42047909 .. 42048730
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG236000.1

Sequence Viewer

Length: 822 bp
ATGGCTTACCATACTCGCTCTAACAGCTTCCCCTCTCGGCCACACCCCATCATTCAAGAAGTTGATGACCATTTGTGCAGATTGAGGTCTTCCGAAGCCACATCCACATCTTCATCATCAGTAAGCCACAAATTAAGTGATCTCCATGACTTGCATGATTGCGTTGATAGGTTGCTTCAATTGCCTCTCACCCAACAAGCCTTAGCACAAGAGCAACATCAGAAATGGGCTAATGAGCTATTAGATGGCTCTATCCGCCTCTTGGATGTCTGCAGTGTTGCCAAGGATGCCCTATCGCAAGCCAAGGAGTGCATACAAGACCTTCAATCAATCATTCGAAGAAGGCATGGAGATGAATCTGCAGTGCTCACAAGTGAGGCTAGGAAATACTTGACCTCCAGGAAAACGGTTAAAAAGGTACTCCACAAGGCTTTGGAGAACATGAAGTCAACAGCAAACAGATCCACTTTCTCTTCCGTCCACAAGGAAGAAGTCACCATTGTTAGCAAGCTCAGAGATGTTGAAGCAATCACTGTCTCCGTGTTTGAATCAGTGCTGTCCTTCATATCTGGGCCAAAGTCCAGGCCTAGCAGCTGGTCATTGGTTTCAAAGATAGTGCAATCAAAGAAAGTAGCTTGTGAGTTAGAAGCAAACGTAAACGAATTTGCAGAGGTGGATGCTGCATTAAAGTCCCTCAAGAGTGCACACAACCAGCTTAACAATCTGGAGTCATGCATTCAAGACCAAGAAGAAGGACTTGAAAGCCTATTTAGGCAATTGATCAAGACTAGAGTCTCCCTTCTCAACATCCTAAACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

273

Amino Acids

30.6

Weight (kDa)

7.71

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 270 3.3e-82 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 256
AclWI GGATC 1 cut(s) 456
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 662
AfaI GTAC 1 cut(s) 420
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 8 cut(s) 56, 179, 326, 524, 548, 609, 740, 761
AjnI CCWGG 2 cut(s) 398, 581
AluBI AGCT 6 cut(s) 27, 238, 511, 594, 635, 715
AluI AGCT 6 cut(s) 27, 238, 511, 594, 635, 715
Alw21I GWGCWC 2 cut(s) 369, 706
Alw26I GTCTC 2 cut(s) 541, 799
Alw44I GTGCAC 1 cut(s) 702
AlwI GGATC 1 cut(s) 456
AoxI GGCC 3 cut(s) 38, 572, 584
ApaLI GTGCAC 1 cut(s) 702
ApeKI GCWGC 2 cut(s) 591, 680
ApoI RAATTY 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 181, 487
AsuII TTCGAA 1 cut(s) 337
BaeGI GKGCMC 1 cut(s) 706
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 2 cut(s) 369, 706
BbvI GCAGC 2 cut(s) 603, 667
BccI CCATC 2 cut(s) 56, 239
BciT130I CCWGG 2 cut(s) 400, 583
BclI TGATCA 1 cut(s) 780
BcoDI GTCTC 2 cut(s) 541, 799
BfaI CTAG 3 cut(s) 381, 588, 789
BfmI CTRYAG 2 cut(s) 271, 360
BisI GCNGC 2 cut(s) 592, 681
BlsI GCNGC 2 cut(s) 593, 682
Bme1390I CCNGG 2 cut(s) 400, 583
BmgT120I GGNCC 1 cut(s) 572
BmrFI CCNGG 2 cut(s) 400, 583
BmsI GCATC 2 cut(s) 277, 667
BoxI GACNNNNGTC 1 cut(s) 791
BpiI GAAGAC 1 cut(s) 81
BpmI CTGGAG 2 cut(s) 382, 746
Bpu10I CCTNAGC 1 cut(s) 202
Bpu14I TTCGAA 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 680
BsaJI CCNNGG 2 cut(s) 282, 303
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 1 cut(s) 262
BseBI CCWGG 2 cut(s) 400, 583
BseDI CCNNGG 2 cut(s) 282, 303
BseGI GGATG 5 cut(s) 101, 271, 292, 682, 807
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 526
BseSI GKGCMC 1 cut(s) 706
BseXI GCAGC 2 cut(s) 603, 667
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 3 cut(s) 40, 574, 586
BsiHKAI GWGCWC 2 cut(s) 369, 706
BslFI GGGAC 1 cut(s) 676
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 2 cut(s) 541, 799
BsmFI GGGAC 1 cut(s) 676
BsmI GAATGC 1 cut(s) 735
BsnI GGCC 3 cut(s) 40, 574, 586
Bsp119I TTCGAA 1 cut(s) 337
Bsp1286I GDGCHC 2 cut(s) 369, 706
Bsp143I GATC 3 cut(s) 139, 461, 780
BspACI CCGC 1 cut(s) 256
BspANI GGCC 3 cut(s) 40, 574, 586
BspCNI CTCAG 1 cut(s) 525
BspMAI CTGCAG 2 cut(s) 275, 364
BspPI GGATC 1 cut(s) 456
BspT104I TTCGAA 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 282, 303
BssMI GATC 3 cut(s) 139, 461, 780
BssT1I CCWWGG 2 cut(s) 282, 303
Bst2UI CCWGG 2 cut(s) 400, 583
Bst4CI ACNGT 2 cut(s) 409, 535
Bst6I CTCTTC 1 cut(s) 478
BstBI TTCGAA 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 300, 509
BstDEI CTNAG 2 cut(s) 202, 512
BstF5I GGATG 5 cut(s) 101, 271, 292, 682, 807
BstKTI GATC 3 cut(s) 142, 464, 783
BstMAI GTCTC 2 cut(s) 541, 799
BstMBI GATC 3 cut(s) 139, 461, 780
BstMWI GCNNNNNNNGC 4 cut(s) 24, 181, 255, 287
BstNI CCWGG 2 cut(s) 400, 583
BstPAI GACNNNNGTC 1 cut(s) 791
BstSCI CCNGG 2 cut(s) 398, 581
BstSFI CTRYAG 2 cut(s) 271, 360
BstSLI GKGCMC 1 cut(s) 706
BstV1I GCAGC 2 cut(s) 603, 667
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuRI GGCC 3 cut(s) 40, 574, 586
BtsCI GGATG 5 cut(s) 101, 271, 292, 682, 807
BtsI GCAGTG 2 cut(s) 280, 369
BtsIMutI CAGTG 4 cut(s) 280, 369, 531, 558
Cac8I GCNNGC 2 cut(s) 300, 509
Cfr13I GGNCC 1 cut(s) 572
Csp6I GTAC 1 cut(s) 419
CviAII CATG 5 cut(s) 146, 155, 347, 442, 732
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 2 cut(s) 202, 512
DpnI GATC 3 cut(s) 141, 463, 782
DpnII GATC 3 cut(s) 139, 461, 780
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 478
EarI CTCTTC 1 cut(s) 478
EciI GGCGGA 1 cut(s) 245
Eco130I CCWWGG 2 cut(s) 282, 303
Eco147I AGGCCT 1 cut(s) 586
EcoRII CCWGG 2 cut(s) 398, 581
EcoT14I CCWWGG 2 cut(s) 282, 303
EcoT22I ATGCAT 1 cut(s) 737
ErhI CCWWGG 2 cut(s) 282, 303
FaeI CATG 5 cut(s) 149, 158, 350, 445, 735
FaiI YATR 8 cut(s) 12, 147, 156, 314, 348, 443, 566, 733
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FaqI GGGAC 1 cut(s) 676
FatI CATG 5 cut(s) 145, 154, 346, 441, 731
FbaI TGATCA 1 cut(s) 780
Fnu4HI GCNGC 2 cut(s) 592, 681
FokI GGATG 5 cut(s) 88, 278, 299, 689, 794
Fsp4HI GCNGC 2 cut(s) 592, 681
FspBI CTAG 3 cut(s) 381, 588, 789
GluI GCNGC 2 cut(s) 592, 681
GsuI CTGGAG 2 cut(s) 382, 746
HaeIII GGCC 3 cut(s) 40, 574, 586
Hin1II CATG 5 cut(s) 149, 158, 350, 445, 735
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 4 cut(s) 356, 548, 728, 792
HphI GGTGA 2 cut(s) 181, 487
Hpy166II GTNNAC 4 cut(s) 450, 481, 658, 704
Hpy188I TCNGA 3 cut(s) 94, 222, 515
Hpy188III TCNNGA 5 cut(s) 56, 697, 725, 740, 784
Hpy8I GTNNAC 4 cut(s) 450, 481, 658, 704
HpyAV CCTTC 5 cut(s) 332, 336, 571, 746, 809
HpyCH4III ACNGT 2 cut(s) 409, 535
HpyCH4IV ACGT 1 cut(s) 654
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 181, 255, 287
HpyF3I CTNAG 2 cut(s) 202, 512
HpySE526I ACGT 1 cut(s) 654
Hsp92II CATG 5 cut(s) 149, 158, 350, 445, 735
Ksp22I TGATCA 1 cut(s) 780
Kzo9I GATC 3 cut(s) 139, 461, 780
LpnPI CCDG 8 cut(s) 385, 412, 555, 568, 580, 595, 710, 725
Lsp1109I GCAGC 2 cut(s) 603, 667
LweI GCATC 2 cut(s) 277, 667
MaeI CTAG 3 cut(s) 381, 588, 789
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 1 cut(s) 493
MalI GATC 3 cut(s) 141, 463, 782
MboI GATC 3 cut(s) 139, 461, 780
MboII GAAGA 6 cut(s) 81, 102, 351, 465, 500, 761
MfeI CAATTG 2 cut(s) 179, 776
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 2 cut(s) 369, 706
MluCI AATT 4 cut(s) 131, 179, 662, 776
MlyI GAGTC 2 cut(s) 737, 801
MnlI CCTC 8 cut(s) 43, 78, 195, 269, 370, 406, 664, 704
Mph1103I ATGCAT 1 cut(s) 737
MseI TTAA 4 cut(s) 134, 411, 686, 717
MslI CAYNNNNRTG 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 594
MspR9I CCNGG 2 cut(s) 400, 583
MunI CAATTG 2 cut(s) 179, 776
Mva1269I GAATGC 1 cut(s) 735
MvaI CCWGG 2 cut(s) 400, 583
MwoI GCNNNNNNNGC 4 cut(s) 24, 181, 255, 287
NdeII GATC 3 cut(s) 139, 461, 780
NlaIII CATG 5 cut(s) 149, 158, 350, 445, 735
NmeAIII GCCGAG 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 493
NsiI ATGCAT 1 cut(s) 737
NspV TTCGAA 1 cut(s) 337
PceI AGGCCT 1 cut(s) 586
PctI GAATGC 1 cut(s) 735
PfeI GAWTC 2 cut(s) 356, 548
PfoI TCCNGGA 1 cut(s) 398
PkrI GCNGC 2 cut(s) 593, 682
PleI GAGTC 2 cut(s) 736, 800
PpsI GAGTC 2 cut(s) 736, 800
PshAI GACNNNNGTC 1 cut(s) 791
Psp6I CCWGG 2 cut(s) 398, 581
PspGI CCWGG 2 cut(s) 398, 581
PspPI GGNCC 1 cut(s) 572
PstI CTGCAG 2 cut(s) 275, 364
PsuI RGATCY 1 cut(s) 461
PvuII CAGCTG 1 cut(s) 594
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 4 cut(s) 134, 411, 686, 717
SatI GCNGC 2 cut(s) 592, 681
Sau3AI GATC 3 cut(s) 139, 461, 780
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 2 cut(s) 737, 801
ScrFI CCNGG 2 cut(s) 400, 583
SduI GDGCHC 2 cut(s) 369, 706
SfaNI GCATC 2 cut(s) 277, 667
SfcI CTRYAG 2 cut(s) 271, 360
SfuI TTCGAA 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 4 cut(s) 131, 179, 662, 776
SseBI AGGCCT 1 cut(s) 586
SsiI CCGC 1 cut(s) 256
SspMI CTAG 3 cut(s) 381, 588, 789
StuI AGGCCT 1 cut(s) 586
StyD4I CCNGG 2 cut(s) 398, 581
StyI CCWWGG 2 cut(s) 282, 303
TaaI ACNGT 2 cut(s) 409, 535
TaiI ACGT 1 cut(s) 657
TaqI TCGA 1 cut(s) 337
TasI AATT 4 cut(s) 131, 179, 662, 776
TfiI GAWTC 2 cut(s) 356, 548
Tru1I TTAA 4 cut(s) 134, 411, 686, 717
Tru9I TTAA 4 cut(s) 134, 411, 686, 717
TscAI CASTG 4 cut(s) 280, 369, 538, 558
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 2 cut(s) 591, 680
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 4 cut(s) 102, 369, 458, 553
TspGWI ACGGA 2 cut(s) 466, 529
TspRI CASTG 4 cut(s) 280, 369, 538, 558
VneI GTGCAC 1 cut(s) 702
XapI RAATTY 1 cut(s) 662
XspI CTAG 3 cut(s) 381, 588, 789
Zsp2I ATGCAT 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.