Rmu_sc0002504.1_g000006

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002504.1
OG0000199
Physical Location & Seq
Reverse (-)
21643 .. 22026
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002504.1_g000006.1.cds

Sequence Viewer

Length: 384 bp
atgaagtcaacagcaaacagatccactttctcttccgtccacaaggaagaagtcaccattgttagcaagctcagagatgttgaagcagtcactgtctccgtgtttgaatcagtgctgtccttcatatctgggccaaagtccaagcctagcagctggtcatcattggtttcaaagatagtgcaatcaaataaagtagcttgtgaattagaagcaaaagtaaacgaatttgcagaggtggatgctgcattaaagtcccccaagagtgcacacaaccagcttatcaatctggagtcatgcattcaagaccaagaagaaggacttgaaagcctatttaggcaattgatcaagactagagtctcccttctcaacatcctaaaccattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

127

Amino Acids

14.02

Weight (kDa)

6.83

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 224
AgsI TTSAA 5 cut(s) 83, 107, 171, 302, 323
AluBI AGCT 4 cut(s) 70, 153, 197, 277
AluI AGCT 4 cut(s) 70, 153, 197, 277
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 2 cut(s) 100, 361
Alw44I GTGCAC 1 cut(s) 264
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 92
AoxI GGCC 1 cut(s) 131
ApaLI GTGCAC 1 cut(s) 264
ApeKI GCWGC 2 cut(s) 150, 242
ApoI RAATTY 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 162, 229
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 100, 361
BfaI CTAG 2 cut(s) 147, 351
BisI GCNGC 2 cut(s) 151, 243
BlsI GCNGC 2 cut(s) 152, 244
BmgT120I GGNCC 1 cut(s) 131
BmsI GCATC 1 cut(s) 229
BoxI GACNNNNGTC 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 308
BseGI GGATG 2 cut(s) 244, 369
BseMII CTCAG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 2 cut(s) 162, 229
BshFI GGCC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 268
BslFI GGGAC 1 cut(s) 238
BsmAI GTCTC 2 cut(s) 100, 361
BsmFI GGGAC 1 cut(s) 238
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 2 cut(s) 20, 342
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 84
BspPI GGATC 1 cut(s) 15
BssMI GATC 2 cut(s) 20, 342
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 244, 369
BstKTI GATC 2 cut(s) 23, 345
BstMAI GTCTC 2 cut(s) 100, 361
BstMBI GATC 2 cut(s) 20, 342
BstPAI GACNNNNGTC 1 cut(s) 353
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 162, 229
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 244, 369
BtsIMutI CAGTG 2 cut(s) 90, 117
Cac8I GCNNGC 1 cut(s) 68
CaiI CAGNNNCTG 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 131
CviAII CATG 1 cut(s) 294
CviJI RGCY 7 cut(s) 70, 133, 145, 153, 197, 277, 327
CviKI_1 RGCY 7 cut(s) 70, 133, 145, 153, 197, 277, 327
DdeI CTNAG 1 cut(s) 71
DpnI GATC 2 cut(s) 22, 344
DpnII GATC 2 cut(s) 20, 342
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 299
FaeI CATG 1 cut(s) 297
FaiI YATR 2 cut(s) 125, 295
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 293
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 151, 243
FokI GGATG 2 cut(s) 251, 356
Fsp4HI GCNGC 2 cut(s) 151, 243
FspBI CTAG 2 cut(s) 147, 351
GluI GCNGC 2 cut(s) 151, 243
GsuI CTGGAG 1 cut(s) 308
HaeIII GGCC 1 cut(s) 133
Hin1II CATG 1 cut(s) 297
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 3 cut(s) 107, 290, 354
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 4 cut(s) 9, 40, 220, 266
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 3 cut(s) 287, 302, 346
Hpy8I GTNNAC 4 cut(s) 9, 40, 220, 266
HpyAV CCTTC 3 cut(s) 130, 308, 371
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 5 cut(s) 181, 230, 245, 266, 297
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 2 cut(s) 20, 342
LpnPI CCDG 4 cut(s) 114, 139, 272, 287
Lsp1109I GCAGC 2 cut(s) 162, 229
LweI GCATC 1 cut(s) 229
MaeI CTAG 2 cut(s) 147, 351
MaeIII GTNAC 2 cut(s) 52, 88
MalI GATC 2 cut(s) 22, 344
MboI GATC 2 cut(s) 20, 342
MboII GAAGA 3 cut(s) 24, 59, 323
MfeI CAATTG 1 cut(s) 338
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 3 cut(s) 203, 224, 338
MlyI GAGTC 2 cut(s) 299, 363
MnlI CCTC 1 cut(s) 226
Mph1103I ATGCAT 1 cut(s) 299
MseI TTAA 1 cut(s) 248
MspA1I CMGCKG 1 cut(s) 153
MunI CAATTG 1 cut(s) 338
Mva1269I GAATGC 1 cut(s) 297
NdeII GATC 2 cut(s) 20, 342
NlaIII CATG 1 cut(s) 297
NmuCI GTSAC 2 cut(s) 52, 88
NsiI ATGCAT 1 cut(s) 299
PctI GAATGC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 152, 244
PleI GAGTC 2 cut(s) 298, 362
PpsI GAGTC 2 cut(s) 298, 362
PshAI GACNNNNGTC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 2 cut(s) 151, 243
Sau3AI GATC 2 cut(s) 20, 342
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 2 cut(s) 299, 363
SduI GDGCHC 1 cut(s) 268
SetI ASST 5 cut(s) 72, 155, 199, 237, 279
SfaNI GCATC 1 cut(s) 229
Sse9I AATT 3 cut(s) 203, 224, 338
SspMI CTAG 2 cut(s) 147, 351
TaaI ACNGT 1 cut(s) 94
TasI AATT 3 cut(s) 203, 224, 338
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 2 cut(s) 97, 117
TseFI GTSAC 2 cut(s) 52, 88
TseI GCWGC 2 cut(s) 150, 242
Tsp45I GTSAC 2 cut(s) 52, 88
TspDTI ATGAA 2 cut(s) 17, 112
TspGWI ACGGA 2 cut(s) 25, 88
TspRI CASTG 2 cut(s) 97, 117
VneI GTGCAC 1 cut(s) 264
XapI RAATTY 1 cut(s) 224
XspI CTAG 2 cut(s) 147, 351
Zsp2I ATGCAT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.