Rmu_sc0002504.1_g000017

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002504.1
OG0000199
Physical Location & Seq
Forward (+)
66515 .. 66883
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002504.1_g000017.1.cds

Sequence Viewer

Length: 369 bp
atgttgaaagagttagatgcagtcacctctgctgtttttgaatccttgttttcctttatagctagttcaaatttgaaatcaaagtcaagcacttggtccttagtttcaaagcaggtgcagcccagaaaagtagcatgtgaatgtgaagaagtcagaaaaacgaatgagcttgagaaggtggatgctgcattgcacttgctcatgagtcacaagactaaagcatctgataacacaatgcaagttgattatgtgcaaaaaaatttaaaggaattcgagatcaacattcaagatattgaagaacgacttgagtgcctctttaggcgcttaatcaaagccagagtttcccttctcaacatattcaacgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

122

Amino Acids

14.05

Weight (kDa)

6.74

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 103
AcsI RAATTY 3 cut(s) 70, 259, 269
AgsI TTSAA 8 cut(s) 7, 41, 69, 76, 108, 287, 296, 361
AluBI AGCT 2 cut(s) 62, 169
AluI AGCT 2 cut(s) 62, 169
ApeKI GCWGC 2 cut(s) 118, 185
ApoI RAATTY 3 cut(s) 70, 259, 269
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 130, 172
BcgI CGANNNNNNTGC 2 cut(s) 291, 325
BfaI CTAG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 325
BfuAI ACCTGC 1 cut(s) 103
BisI GCNGC 2 cut(s) 119, 186
BlsI GCNGC 2 cut(s) 120, 187
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmsI GCATC 3 cut(s) 7, 172, 230
BpuEI CTTGAG 2 cut(s) 191, 326
Bse3DI GCAATG 1 cut(s) 188
BseGI GGATG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 130, 172
BsgI GTGCAG 1 cut(s) 137
Bsp143I GATC 1 cut(s) 276
BspHI TCATGA 1 cut(s) 201
BspMI ACCTGC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 188
BssMI GATC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 1 cut(s) 279
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 130, 172
BtsCI GGATG 1 cut(s) 187
BveI ACCTGC 1 cut(s) 103
CciI TCATGA 1 cut(s) 201
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 96
CviAII CATG 2 cut(s) 135, 202
CviJI RGCY 4 cut(s) 62, 121, 169, 335
CviKI_1 RGCY 4 cut(s) 62, 121, 169, 335
DdeI CTNAG 1 cut(s) 100
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
DraI TTTAAA 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 269
FaeI CATG 2 cut(s) 138, 205
FaiI YATR 5 cut(s) 59, 136, 203, 249, 356
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 2 cut(s) 134, 201
Fnu4HI GCNGC 2 cut(s) 119, 186
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 2 cut(s) 119, 186
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 323
GluI GCNGC 2 cut(s) 119, 186
HaeII RGCGCY 1 cut(s) 325
HhaI GCGC 1 cut(s) 324
Hin1II CATG 2 cut(s) 138, 205
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 2 cut(s) 41, 205
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 155, 226
Hpy188III TCNNGA 3 cut(s) 202, 274, 287
HpyAV CCTTC 2 cut(s) 169, 356
HpyCH4V TGCA 6 cut(s) 20, 118, 188, 193, 238, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HpyF3I CTNAG 1 cut(s) 100
Hsp92II CATG 2 cut(s) 138, 205
HspAI GCGC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 276
LpnPI CCDG 3 cut(s) 98, 136, 349
Lsp1109I GCAGC 2 cut(s) 130, 172
LweI GCATC 3 cut(s) 7, 172, 230
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 22, 206
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 2 cut(s) 158, 308
MluCI AATT 3 cut(s) 70, 259, 269
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 2 cut(s) 37, 323
MseI TTAA 2 cut(s) 263, 326
MslI CAYNNNNRTG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 118
NdeII GATC 1 cut(s) 276
NlaIII CATG 2 cut(s) 138, 205
NmuCI GTSAC 2 cut(s) 22, 206
NspI RCATGY 1 cut(s) 138
PagI TCATGA 1 cut(s) 201
PaqCI CACCTGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 120, 187
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 139
SaqAI TTAA 2 cut(s) 263, 326
SatI GCNGC 2 cut(s) 119, 186
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 1 cut(s) 214
SetI ASST 5 cut(s) 29, 64, 117, 171, 180
SfaNI GCATC 3 cut(s) 7, 172, 230
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 139
SmlI CTYRAG 2 cut(s) 170, 305
SmoI CTYRAG 2 cut(s) 170, 305
Sse9I AATT 3 cut(s) 70, 259, 269
SspMI CTAG 1 cut(s) 63
TaqI TCGA 1 cut(s) 273
TasI AATT 3 cut(s) 70, 259, 269
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 263, 326
Tru9I TTAA 2 cut(s) 263, 326
TseFI GTSAC 2 cut(s) 22, 206
TseI GCWGC 2 cut(s) 118, 185
Tsp45I GTSAC 2 cut(s) 22, 206
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 3 cut(s) 70, 259, 269
XceI RCATGY 1 cut(s) 138
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.